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Gene TCF4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
640 representative clones for gene TCF4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB451911 testis .a 1 to 494 1 to 494   tiling clone,   494/494
(100 %)
3 diff
(99.4 %id)
DB047766 testis .a 72 to 629 2 to 559   tiling clone, capped   558/558
(100 %)
2 diff
(99.7 %id)
BC031056 testis .a 74 to 2550 1 to 2477   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 2477/2477
(100 %)
6 diff
(99.8 %id)
BI461828 testis .a 74 to 589 6 to 522   available from MGC,   517/712
(72 %)
12 diff
(98.4 %id)
DA516886 brain .a 424 to 911 2 to 490   capped   489/489
(100 %)
1 diff
(99.8 %id)
DC358747 lung .a 424 to 980 1 to 558       558/558
(100 %)
6 diff
(99.0 %id)
CD557562 testis .a 507 to 1265 139 to 901       763/901
(84 %)
17 diff
(98.2 %id)
DA753032   .a 508 to 1055 8 to 555   capped   548/554
(98 %)
6 diff
(99.0 %id)
DA923516 small intestine .a 554 to 1120 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BP206165 coronary artery .a 582 to 1016 147 to 581       435/581
(74 %)
2 diff
(99.7 %id)
CN404351 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 582 to 791 181 to 390       210/390
(53 %)
0 diff
(100 %id)
DC358223 lung .a 582 to 965 182 to 565       384/565
(67 %)
1 diff
(99.9 %id)
BI544467 brain, hippocampus .a 582 to 1305 128 to 848       721/848
(85 %)
6 diff
(99.3 %id)
TI_44000589   .a 582 to 1305 249 to 969       721/969
(74 %)
6 diff
(99.4 %id)
TI_1948092827   .a 582 to 935 270 to 628       359/1288
(27 %)
7 diff
(99.5 %id)
DC422855 uterus .a 582 to 1003 134 to 555       422/555
(76 %)
0 diff
(100 %id)
BM468421 leiomyosarcoma, uterus .a 749 to 1583 30 to 867       838/1058
(79 %)
15 diff
(98.6 %id)
BP229419 brain .a 806 to 1247 143 to 586       444/587
(75 %)
6 diff
(99.0 %id)
BQ933491 sciatic nerve .a 852 to 1668 1 to 827       827/905
(91 %)
20 diff
(97.8 %id)
DA001612   .a 958 to 1527 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
TI_1948092677   .a 986 to 1531 676 to 128       549/1286
(42 %)
23 diff
(98.3 %id)
CD698014 normal nasopharynx .a 989 to 1480 12 to 503       492/503
(97 %)
6 diff
(98.9 %id)
EL954810 eyeball .a 992 to 1505 1 to 514       514/517
(99 %)
5 diff
(99.1 %id)
CB858047 anterior tongue, pooled .a 1027 to 1464 1 to 438       438/438
(100 %)
0 diff
(100 %id)
FN159044 breast carcinoma .a 1085 to 1162 78 to 1     Submitted on the opposite strand 78/79
(98 %)
0 diff
(100 %id)
BX370662   .a 1092 to 1870 65 to 847       785/894
(87 %)
20 diff
(97.8 %id)
BF529687 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1112 to 1913 1 to 793       791/929
(85 %)
19 diff
(98.0 %id)
FN076676 breast carcinoma .a 1141 to 1225 89 to 1     Submitted on the opposite strand 89/89
(100 %)
4 diff
(95.6 %id)
BF997928 placenta_normal .a 1368 to 1985 6 to 623       618/623
(99 %)
11 diff
(98.3 %id)
BF999528 placenta_normal .a 1373 to 1991 18 to 629       612/684
(89 %)
17 diff
(97.6 %id)
BF922977 nervous_tumor .a 1402 to 1771 378 to 12     Submitted on the opposite strand 367/406
(90 %)
0 diff
(100 %id)
BF919064 nervous_tumor .a 1432 to 1659 205 to 432       228/432
(52 %)
10 diff
(97.7 %id)
AV752875 Pituitary .a 1436 to 2073 1 to 637       637/748
(85 %)
11 diff
(98.6 %id)
BP373782 umbilical cord .a 1446 to 2028 1 to 583       583/583
(100 %)
5 diff
(99.2 %id)
BM011452 brain, neuroblastoma, cell line .a 1490 to 2274 1 to 781   tiling clone,   781/781
(100 %)
5 diff
(99.4 %id)
BM011387 brain, neuroblastoma, cell line .a 1490 to 2270 1 to 776       776/777
(99 %)
7 diff
(99.1 %id)
TI_59380548   .a 1491 to 2270 58 to 832       775/776
(99 %)
6 diff
(99.3 %id)
TI_59380617   .a 1491 to 2274 62 to 841       780/780
(100 %)
4 diff
(99.5 %id)
BE795051 lung, small cell carcinoma .a 1495 to 2312 1 to 833       833/893
(93 %)
27 diff
(97.0 %id)
R95477   .a 1503 to 1644 1 to 144       144/144
(100 %)
4 diff
(97.3 %id)
FN141826 breast carcinoma .a 1583 to 1678 96 to 1     Submitted on the opposite strand 96/96
(100 %)
0 diff
(100 %id)
CN404349 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1677 to 2068 1 to 392       392/392
(100 %)
2 diff
(99.5 %id)
BF850583 lung_normal .a 1739 to 1887 25 to 171       147/171
(85 %)
9 diff
(94.8 %id)
BF850655 lung_normal .a 1742 to 1887 1 to 146       146/146
(100 %)
6 diff
(95.9 %id)
CN404347 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1795 to 2501 1 to 707   tiling clone,   707/707
(100 %)
2 diff
(99.8 %id)
T06068   .a 1860 to 2085 300 to 74       227/300
(75 %)
1 diff
(99.7 %id)
FN065598 breast carcinoma .a 1945 to 2025 82 to 1     Submitted on the opposite strand 82/82
(100 %)
2 diff
(97.6 %id)
FN068083 breast carcinoma .a 2140 to 2220 81 to 1     Submitted on the opposite strand 81/91
(89 %)
2 diff
(97.9 %id)
FN074279 breast carcinoma .a 2185 to 2254 1 to 72       72/72
(100 %)
6 diff
(91.7 %id)
BQ332140 lung_tumor .a 2226 to 2442 229 to 13       217/256
(84 %)
5 diff
(98.1 %id)
BM727530 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1 to 216 1 to 216       216/216
(100 %)
0 diff
(100 %id)
BM717768 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1 to 218 1 to 218   tiling clone,   218/218
(100 %)
0 diff
(100 %id)
TI_151756053   .b 1 to 753 783 to 30   tiling clone,   754/999
(75 %)
0 diff
(100 %id)
TI_151727436   .b 5 to 753 777 to 29   tiling clone,   749/1009
(74 %)
0 diff
(100 %id)
TI_151812393   .b 29 to 739 101 to 814       714/1002
(71 %)
6 diff
(99.5 %id)
DC351411 brain .b 712 to 1261 1 to 548   tiling clone,   548/548
(100 %)
1 diff
(99.9 %id)
DC375268 brain .b 712 to 1237 1 to 526       526/526
(100 %)
3 diff
(99.5 %id)
DA775021 brain .b 748 to 1319 2 to 572   tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
DA509282 brain .b 754 to 1326 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
AK315074 brain .b 755 to 3315 1 to 2560 S360P tiling clone,   2560/2560
(100 %)
2 diff
(100.0 %id)
DA491017 brain .b 756 to 1312 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA554809   .b 756 to 1298 2 to 542   capped   541/541
(100 %)
2 diff
(99.7 %id)
DA772098 brain .b 756 to 1318 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA782214 brain .b 782 to 1356 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA504762 brain .b 783 to 1349 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA531179 brain .b 783 to 1388 2 to 603   capped   602/602
(100 %)
4 diff
(99.4 %id)
CN427507 embryonic stem cells, cell lines H1, H7, andH9 .b 802 to 1388 1 to 587       587/587
(100 %)
3 diff
(99.5 %id)
DA503169 brain .b 813 to 1365 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA514192 brain .b 815 to 1352 2 to 539   capped   538/538
(100 %)
4 diff
(99.3 %id)
BX094342 pooled .b 1014 to 1630 624 to 8     Submitted on the opposite strand 617/631
(97 %)
0 diff
(100 %id)
AA936434 pooled .b 1037 to 1488 1 to 452     Submitted on the opposite strand 452/519
(87 %)
5 diff
(99.1 %id)
DA782620 brain .b 1038 to 1488 2 to 453   capped   452/580
(77 %)
1 diff
(99.9 %id)
AA904834 pooled .b 1039 to 1426 1 to 389     Submitted on the opposite strand 389/580
(67 %)
2 diff
(99.7 %id)
BP265842 thyroid .b 1186 to 1765 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
DC426407 brain .b 2958 to 3501 544 to 1   tiling clone,   544/544
(100 %)
0 diff
(100 %id)
NM_001083962.1   .c 1 to 8331 2 to 8332 exact RefSeq,   8332/8332
(100 %)
0 diff
(100 %id)
DA883656   .c 1 to 464 2 to 466   tiling clone, capped   465/465
(100 %)
1 diff
(99.8 %id)
CN275879 embryonic stem cells, DMSO-treated H9 cellline .c 263 to 496 1 to 234       234/234
(100 %)
0 diff
(100 %id)
DA471309   .c 405 to 961 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA737124   .c 407 to 1161 2 to 758   tiling clone, capped   757/849
(89 %)
6 diff
(99.3 %id)
DA261909 caudate nucleus .c 430 to 676 2 to 248   capped   247/247
(100 %)
0 diff
(100 %id)
CN404350 embryonic stem cells, DMSO-treated H9 cellline .c 445 to 752 1 to 308       308/308
(100 %)
3 diff
(99.1 %id)
CK905538 insulinoma, Pancreas .c 471 to 1060 1 to 590       590/590
(100 %)
5 diff
(99.2 %id)
DA659926   .c 480 to 1054 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA770832 brain .c 480 to 1053 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DN992978 brain, whole brain .c 483 to 1204 8 to 729       722/729
(99 %)
7 diff
(99.1 %id)
BQ706300 Spleen .c 495 to 1340 1 to 847       847/847
(100 %)
5 diff
(99.5 %id)
BC125084 PCR rescued clones .c 586 to 2778 1 to 2193 exact tiling clone,   2193/2194
(99 %)
2 diff
(100.0 %id)
F11504 brain, total brain .c 1180 to 1468 1 to 290       290/290
(100 %)
1 diff
(99.7 %id)
AU118678 whole embryo, mainly head .c 1260 to 2009 2 to 751   capped Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 750/750
(100 %)
4 diff
(99.5 %id)
T10205   .c 1326 to 1756 16 to 448       433/449
(96 %)
11 diff
(97.6 %id)
BQ882546 dorsal root ganglia .c 1882 to 2731 1 to 858       858/910
(94 %)
15 diff
(98.4 %id)
TI_154132522   .c 2165 to 2813 753 to 103   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 651/913
(71 %)
5 diff
(99.5 %id)
BX098728   .c 2215 to 2725 1 to 511   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 511/511
(100 %)
1 diff
(99.9 %id)
AA999727 Kidney .c 2259 to 2813 555 to 1       555/557
(99 %)
4 diff
(99.3 %id)
AI582793 anaplastic oligodendroglioma, brain .c 2259 to 2815 555 to 1       555/555
(100 %)
8 diff
(98.6 %id)
DB517437 testis .c 2262 to 2725 1 to 464     Submitted on the opposite strand 464/464
(100 %)
2 diff
(99.6 %id)
DB330398   .c 2271 to 2798 528 to 1       528/528
(100 %)
0 diff
(100 %id)
DB539050 hippocampus .c 2277 to 2973 1 to 696     Submitted on the opposite strand 696/696
(100 %)
6 diff
(99.2 %id)
CR736351   .c 2281 to 2757 1 to 478       478/478
(100 %)
2 diff
(99.6 %id)
DB369693   .c 2295 to 2815 523 to 2       522/528
(98 %)
3 diff
(99.5 %id)
AU145182 whole embryo, mainly head .c 2299 to 2813 528 to 15   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 514/551
(93 %)
11 diff
(98.1 %id)
DB474389 hippocampus .c 2300 to 2801 1 to 502       502/502
(100 %)
4 diff
(99.3 %id)
AI203649 lung .c 2312 to 2805 520 to 28   AAA Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base) 493/493
(100 %)
2 diff
(99.6 %id)
AI554951 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2312 to 2813 502 to 1       502/502
(100 %)
1 diff
(99.9 %id)
AA435654   .c 2335 to 2813 478 to 1       478/478
(100 %)
3 diff
(99.4 %id)
BX096145 whole brain .c 2336 to 2813 492 to 15   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 478/478
(100 %)
1 diff
(99.8 %id)
AI343577 2 pooled tumors (clear cell type), Kidney .c 2341 to 2801 461 to 1       461/461
(100 %)
1 diff
(99.8 %id)
AA701452 liver and spleen .c 2347 to 2813 467 to 1       467/467
(100 %)
4 diff
(99.2 %id)
AA296545 umbilical vein .c 2385 to 2798 415 to 1       415/415
(100 %)
4 diff
(99.1 %id)
AW511180 pooled .c 2432 to 2816 385 to 1       385/385
(100 %)
0 diff
(100 %id)
F09165 brain, total brain .c 2461 to 2807 347 to 1       347/347
(100 %)
1 diff
(99.8 %id)
AA342327 Spleen .c 2463 to 2798 333 to 1       333/333
(100 %)
2 diff
(99.4 %id)
AL700280 human skeletal muscle .c 2483 to 2998 1 to 516       516/516
(100 %)
1 diff
(99.9 %id)
AY517518   .c 2537 to 2977 1 to 441       441/443
(99 %)
1 diff
(99.8 %id)
BX490455   .c 2544 to 3158 1 to 615   tiling clone,   615/615
(100 %)
1 diff
(99.9 %id)
DB534445 hippocampus .c 2547 to 2973 1 to 426     Submitted on the opposite strand 426/426
(100 %)
3 diff
(99.3 %id)
T10204   .c 2592 to 2810 219 to 1       219/219
(100 %)
2 diff
(99.1 %id)
AA227679 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2609 to 2955 1 to 345   fully sequenced,   345/345
(100 %)
2 diff
(99.5 %id)
AI828883 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 2629 to 3299 672 to 1       672/750
(89 %)
15 diff
(98.0 %id)
AA227564 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2631 to 2973 343 to 1   fully sequenced,   343/343
(100 %)
2 diff
(99.5 %id)
AI088569 uterus .c 2656 to 3004 349 to 1       349/349
(100 %)
1 diff
(99.8 %id)
BX460859 brain, fetal brain .c 2694 to 3010 317 to 1     Submitted on the opposite strand 317/317
(100 %)
0 diff
(100 %id)
BE328854 carcinoid, lung .c 2739 to 2972 234 to 1       234/234
(100 %)
0 diff
(100 %id)
AI824692 Prostate .c 2831 to 2973 143 to 1       143/143
(100 %)
0 diff
(100 %id)
BM728398 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2848 to 3427 1 to 580       580/580
(100 %)
0 diff
(100 %id)
AI680737 carcinoid, lung .c 2958 to 3537 1 to 580   tiling clone, Submitted on the opposite strand 580/580
(100 %)
0 diff
(100 %id)
AA292599 germinal center B cell .c 2976 to 3416 1 to 442       442/442
(100 %)
4 diff
(99.1 %id)
CA389062 eye, RPE/choroid .c 3124 to 3547 1 to 424       424/424
(100 %)
0 diff
(100 %id)
TI_151734251   .c 3285 to 3855 657 to 87   AAA Possibly primed on the genome, locally A rich (20/23 A in genome downstream of last aligned base) 571/912
(62 %)
0 diff
(100 %id)
AK095066 hippocampus .c 3387 to 6482 1 to 3097   tiling clone, available from FLJ,   3097/3097
(100 %)
2 diff
(100.0 %id)
TI_154160009   .c 3396 to 3859 98 to 561       464/472
(98 %)
4 diff
(99.2 %id)
CB217528 mandible, pooled .c 3401 to 3863 22 to 485   AAA Submitted on the opposite strand 464/485
(95 %)
6 diff
(98.8 %id)
CB217969 mandible, pooled .c 3401 to 3995 23 to 619     Submitted on the opposite strand 597/619
(96 %)
6 diff
(99.1 %id)
CB217990 mandible, pooled .c 3401 to 4002 23 to 626     Submitted on the opposite strand 604/626
(96 %)
11 diff
(98.3 %id)
CB217839 mandible, pooled .c 3401 to 3997 23 to 621     Submitted on the opposite strand 599/621
(96 %)
8 diff
(98.8 %id)
CB218040 mandible, pooled .c 3401 to 4009 23 to 633     Submitted on the opposite strand 611/633
(96 %)
6 diff
(99.1 %id)
CB218217 mandible, pooled .c 3401 to 3994 23 to 618     Submitted on the opposite strand 596/618
(96 %)
6 diff
(99.1 %id)
CB218221 mandible, pooled .c 3401 to 3998 23 to 622     Submitted on the opposite strand 600/622
(96 %)
8 diff
(98.8 %id)
CB218223 mandible, pooled .c 3401 to 3998 23 to 622     Submitted on the opposite strand 600/622
(96 %)
8 diff
(98.8 %id)
CB218402 mandible, pooled .c 3401 to 3996 23 to 620     Submitted on the opposite strand 598/620
(96 %)
7 diff
(98.9 %id)
CB218081 mandible, pooled .c 3401 to 3998 23 to 622     Submitted on the opposite strand 600/622
(96 %)
8 diff
(98.8 %id)
CB217948 mandible, pooled .c 3401 to 3998 23 to 622     Submitted on the opposite strand 600/622
(96 %)
8 diff
(98.8 %id)
CB218507 mandible, pooled .c 3401 to 4008 23 to 632     Submitted on the opposite strand 610/632
(96 %)
6 diff
(99.1 %id)
CB218840 mandible, pooled .c 3401 to 4031 23 to 655     Submitted on the opposite strand 633/655
(96 %)
6 diff
(99.1 %id)
CB218850 mandible, pooled .c 3401 to 4005 23 to 629     Submitted on the opposite strand 607/629
(96 %)
6 diff
(99.1 %id)
CB218690 mandible, pooled .c 3401 to 4020 23 to 644     Submitted on the opposite strand 622/644
(96 %)
6 diff
(99.1 %id)
CB218694 mandible, pooled .c 3401 to 4013 23 to 637     Submitted on the opposite strand 615/637
(96 %)
6 diff
(99.1 %id)
CB218696 mandible, pooled .c 3401 to 4008 23 to 632     Submitted on the opposite strand 610/632
(96 %)
6 diff
(99.1 %id)
CB218710 mandible, pooled .c 3401 to 4013 23 to 637     Submitted on the opposite strand 615/637
(96 %)
6 diff
(99.1 %id)
CB218543 mandible, pooled .c 3401 to 4005 23 to 629     Submitted on the opposite strand 607/629
(96 %)
6 diff
(99.1 %id)
CB218729 mandible, pooled .c 3401 to 4027 23 to 651     Submitted on the opposite strand 629/651
(96 %)
6 diff
(99.1 %id)
CB218738 mandible, pooled .c 3401 to 4018 23 to 642     Submitted on the opposite strand 620/642
(96 %)
6 diff
(99.1 %id)
CB219063 mandible, pooled .c 3401 to 4025 23 to 649     Submitted on the opposite strand 627/649
(96 %)
6 diff
(99.1 %id)
CB218898 mandible, pooled .c 3401 to 4025 23 to 649     Submitted on the opposite strand 627/649
(96 %)
6 diff
(99.1 %id)
CB218757 mandible, pooled .c 3401 to 4024 23 to 648     Submitted on the opposite strand 626/648
(96 %)
6 diff
(99.1 %id)
CB218601 mandible, pooled .c 3401 to 4018 23 to 642     Submitted on the opposite strand 620/642
(96 %)
6 diff
(99.1 %id)
CB218772 mandible, pooled .c 3401 to 4018 23 to 642     Submitted on the opposite strand 620/642
(96 %)
6 diff
(99.1 %id)
CB218610 mandible, pooled .c 3401 to 4015 23 to 639     Submitted on the opposite strand 617/639
(96 %)
6 diff
(99.1 %id)
CB218944 mandible, pooled .c 3401 to 4008 23 to 632     Submitted on the opposite strand 610/632
(96 %)
6 diff
(99.1 %id)
CB218621 mandible, pooled .c 3401 to 4020 23 to 644     Submitted on the opposite strand 622/644
(96 %)
6 diff
(99.1 %id)
CB218808 mandible, pooled .c 3401 to 4003 23 to 627     Submitted on the opposite strand 605/627
(96 %)
6 diff
(99.1 %id)
CB218639 mandible, pooled .c 3401 to 4003 23 to 627     Submitted on the opposite strand 605/627
(96 %)
6 diff
(99.1 %id)
CB219137 mandible, pooled .c 3401 to 4022 23 to 646     Submitted on the opposite strand 624/649
(96 %)
3 diff
(99.6 %id)
CB219139 mandible, pooled .c 3401 to 4017 23 to 641     Submitted on the opposite strand 619/641
(96 %)
6 diff
(99.1 %id)
CB218973 mandible, pooled .c 3401 to 4003 23 to 627     Submitted on the opposite strand 605/627
(96 %)
6 diff
(99.1 %id)
CB218821 mandible, pooled .c 3401 to 4025 23 to 649     Submitted on the opposite strand 627/649
(96 %)
6 diff
(99.1 %id)
CB218657 mandible, pooled .c 3401 to 4025 23 to 649     Submitted on the opposite strand 627/649
(96 %)
6 diff
(99.1 %id)
CB218826 mandible, pooled .c 3401 to 4017 23 to 641     Submitted on the opposite strand 619/641
(96 %)
6 diff
(99.1 %id)
CB218985 mandible, pooled .c 3401 to 4015 23 to 639     Submitted on the opposite strand 617/639
(96 %)
6 diff
(99.1 %id)
CB218987 mandible, pooled .c 3401 to 4017 23 to 641     Submitted on the opposite strand 619/641
(96 %)
6 diff
(99.1 %id)
CB219160 mandible, pooled .c 3401 to 4017 23 to 641     Submitted on the opposite strand 619/641
(96 %)
6 diff
(99.1 %id)
CB218989 mandible, pooled .c 3401 to 4018 23 to 642     Submitted on the opposite strand 620/642
(96 %)
6 diff
(99.1 %id)
CB409694 maxilla, pooled .c 3401 to 4010 23 to 634     Submitted on the opposite strand 612/634
(96 %)
6 diff
(99.1 %id)
CB409710 maxilla, pooled .c 3401 to 4003 23 to 627     Submitted on the opposite strand 605/627
(96 %)
6 diff
(99.1 %id)
AA376844 small intestine .c 3414 to 3718 1 to 305       305/305
(100 %)
0 diff
(100 %id)
AI003998   .c 3422 to 3859 438 to 1       438/438
(100 %)
0 diff
(100 %id)
TI_149291560   .c 3508 to 4377 941 to 77   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 865/929
(93 %)
14 diff
(98.5 %id)
BX115897 multiple sclerosis lesions .c 3608 to 4343 736 to 1     Submitted on the opposite strand 736/736
(100 %)
0 diff
(100 %id)
DB162632 thymus .c 3668 to 4168 2 to 502   capped   501/501
(100 %)
0 diff
(100 %id)
BM974171 lung .c 3675 to 4377 717 to 16   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 702/702
(100 %)
1 diff
(99.9 %id)
BF433429 carcinoid, lung .c 3815 to 4380 566 to 1       566/566
(100 %)
0 diff
(100 %id)
DA486963 brain .c 3888 to 4469 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
AI089211 uterus .c 3897 to 4386 490 to 1       490/490
(100 %)
0 diff
(100 %id)
AK021980 whole embryo, mainly body .c 3899 to 6479 1 to 2581   tiling clone, available from FLJ,   2581/2581
(100 %)
3 diff
(99.9 %id)
DB543210 hippocampus .c 3906 to 4377 1 to 473     Submitted on the opposite strand 473/473
(100 %)
1 diff
(99.8 %id)
AI291882 carcinoid, lung .c 3906 to 4376 471 to 1       471/471
(100 %)
0 diff
(100 %id)
AI359999 anaplastic oligodendroglioma, brain .c 3936 to 4378 443 to 1       443/443
(100 %)
0 diff
(100 %id)
AI140826 pooled .c 3963 to 4377 430 to 16   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 415/415
(100 %)
0 diff
(100 %id)
AA284174 germinal center B cell .c 3974 to 4377 404 to 1       404/404
(100 %)
0 diff
(100 %id)
BE466072 pooled germ cell tumors .c 4021 to 4525 505 to 1       505/505
(100 %)
0 diff
(100 %id)
AA974683 pooled .c 4027 to 4378 352 to 1       352/352
(100 %)
0 diff
(100 %id)
AW590521 pooled germ cell tumors .c 4035 to 4525 502 to 12   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 491/491
(100 %)
0 diff
(100 %id)
DA483178 brain .c 4070 to 4887 2 to 825   capped   824/835
(98 %)
17 diff
(98.0 %id)
AI492030 B-cell, chronic lymphotic leukemia .c 4088 to 4376 289 to 1       289/289
(100 %)
0 diff
(100 %id)
D61472   .c 4114 to 4377 1 to 264       264/264
(100 %)
0 diff
(100 %id)
FN052406 breast carcinoma .c 4130 to 4218 96 to 2     Submitted on the opposite strand 95/96
(98 %)
0 diff
(100 %id)
DA881688   .c 4176 to 4730 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
AA961401 pooled germ cell tumors .c 4331 to 4783 453 to 1       453/453
(100 %)
0 diff
(100 %id)
CN360113 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 4358 to 4948 1 to 591       591/591
(100 %)
0 diff
(100 %id)
FN131261 breast carcinoma .c 4422 to 4493 72 to 1     Submitted on the opposite strand 72/72
(100 %)
1 diff
(98.7 %id)
CB217970 mandible, pooled .c 4489 to 5106 619 to 1     Submitted on the opposite strand 619/619
(100 %)
1 diff
(99.9 %id)
CB218841 mandible, pooled .c 4489 to 5106 619 to 1     Submitted on the opposite strand 619/619
(100 %)
1 diff
(99.9 %id)
CB217991 mandible, pooled .c 4490 to 5106 618 to 1     Submitted on the opposite strand 618/618
(100 %)
1 diff
(99.9 %id)
CB218222 mandible, pooled .c 4490 to 5106 618 to 1     Submitted on the opposite strand 618/618
(100 %)
1 diff
(99.9 %id)
CB218082 mandible, pooled .c 4490 to 5106 618 to 1     Submitted on the opposite strand 618/618
(100 %)
1 diff
(99.9 %id)
CB218218 mandible, pooled .c 4491 to 5106 617 to 1     Submitted on the opposite strand 617/617
(100 %)
1 diff
(99.9 %id)
CB217840 mandible, pooled .c 4492 to 5106 616 to 1     Submitted on the opposite strand 616/616
(100 %)
1 diff
(99.9 %id)
CB218711 mandible, pooled .c 4492 to 5106 616 to 1     Submitted on the opposite strand 616/616
(100 %)
1 diff
(99.9 %id)
CB218041 mandible, pooled .c 4493 to 5106 615 to 1     Submitted on the opposite strand 615/615
(100 %)
1 diff
(99.9 %id)
CB217949 mandible, pooled .c 4493 to 5106 615 to 1     Submitted on the opposite strand 615/615
(100 %)
1 diff
(99.9 %id)
CB218224 mandible, pooled .c 4494 to 5106 614 to 1     Submitted on the opposite strand 614/614
(100 %)
1 diff
(99.9 %id)
CB218697 mandible, pooled .c 4496 to 5106 612 to 1     Submitted on the opposite strand 612/612
(100 %)
1 diff
(99.9 %id)
CB218403 mandible, pooled .c 4497 to 5106 611 to 1     Submitted on the opposite strand 611/611
(100 %)
1 diff
(99.9 %id)
CB218508 mandible, pooled .c 4499 to 5106 609 to 1     Submitted on the opposite strand 609/609
(100 %)
1 diff
(99.9 %id)
CB218809 mandible, pooled .c 4499 to 5106 609 to 1     Submitted on the opposite strand 609/609
(100 %)
1 diff
(99.9 %id)
CB218640 mandible, pooled .c 4499 to 5106 609 to 1     Submitted on the opposite strand 609/609
(100 %)
1 diff
(99.9 %id)
CB409711 maxilla, pooled .c 4500 to 5106 608 to 1     Submitted on the opposite strand 608/608
(100 %)
1 diff
(99.9 %id)
CB218544 mandible, pooled .c 4501 to 5106 607 to 1     Submitted on the opposite strand 607/607
(100 %)
1 diff
(99.9 %id)
CB219138 mandible, pooled .c 4501 to 5106 607 to 1     Submitted on the opposite strand 607/607
(100 %)
1 diff
(99.9 %id)
CB219161 mandible, pooled .c 4501 to 5106 607 to 1     Submitted on the opposite strand 607/607
(100 %)
1 diff
(99.9 %id)
CB218974 mandible, pooled .c 4502 to 5106 606 to 1     Submitted on the opposite strand 606/606
(100 %)
1 diff
(99.9 %id)
CB218658 mandible, pooled .c 4502 to 5106 606 to 1     Submitted on the opposite strand 606/606
(100 %)
1 diff
(99.9 %id)
CB409695 maxilla, pooled .c 4502 to 5106 606 to 1     Submitted on the opposite strand 606/606
(100 %)
1 diff
(99.9 %id)
CB218691 mandible, pooled .c 4503 to 5106 605 to 1     Submitted on the opposite strand 605/605
(100 %)
1 diff
(99.9 %id)
CB218851 mandible, pooled .c 4505 to 5106 603 to 1     Submitted on the opposite strand 603/603
(100 %)
1 diff
(99.9 %id)
CB218758 mandible, pooled .c 4506 to 5106 602 to 1     Submitted on the opposite strand 602/602
(100 %)
1 diff
(99.9 %id)
CB219140 mandible, pooled .c 4506 to 5106 602 to 1     Submitted on the opposite strand 602/602
(100 %)
1 diff
(99.9 %id)
CB218827 mandible, pooled .c 4507 to 5106 601 to 1     Submitted on the opposite strand 601/601
(100 %)
1 diff
(99.9 %id)
CB218988 mandible, pooled .c 4507 to 5106 601 to 1     Submitted on the opposite strand 601/601
(100 %)
1 diff
(99.9 %id)
CB218945 mandible, pooled .c 4508 to 5106 600 to 1     Submitted on the opposite strand 600/600
(100 %)
1 diff
(99.9 %id)
DA493706 brain .c 4510 to 5078 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
CB218695 mandible, pooled .c 4510 to 5106 598 to 1     Submitted on the opposite strand 598/598
(100 %)
1 diff
(99.9 %id)
AU118026 whole embryo, mainly head .c 4511 to 5313 2 to 804   capped   803/804
(99 %)
11 diff
(98.7 %id)
CB217950 mandible, pooled .c 4511 to 4580 70 to 1     Submitted on the opposite strand 70/70
(100 %)
0 diff
(100 %id)
CB218611 mandible, pooled .c 4511 to 5106 597 to 1     Submitted on the opposite strand 597/597
(100 %)
1 diff
(99.9 %id)
CB218602 mandible, pooled .c 4512 to 5106 596 to 1     Submitted on the opposite strand 596/596
(100 %)
1 diff
(99.9 %id)
CB218899 mandible, pooled .c 4515 to 5106 593 to 1     Submitted on the opposite strand 593/593
(100 %)
1 diff
(99.9 %id)
DA289266 hippocampus .c 4516 to 5063 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
CB218773 mandible, pooled .c 4516 to 5106 592 to 1     Submitted on the opposite strand 592/592
(100 %)
1 diff
(99.9 %id)
CB218986 mandible, pooled .c 4517 to 5116 653 to 53     Submitted on the opposite strand 601/653
(92 %)
0 diff
(100 %id)
CB218990 mandible, pooled .c 4518 to 5106 590 to 1     Submitted on the opposite strand 590/590
(100 %)
1 diff
(99.9 %id)
CB219064 mandible, pooled .c 4520 to 5106 588 to 1     Submitted on the opposite strand 588/588
(100 %)
1 diff
(99.9 %id)
CB218730 mandible, pooled .c 4522 to 5106 586 to 1     Submitted on the opposite strand 586/586
(100 %)
1 diff
(99.9 %id)
CB218822 mandible, pooled .c 4522 to 5106 586 to 1     Submitted on the opposite strand 586/586
(100 %)
1 diff
(99.9 %id)
AU117007 whole embryo, mainly head .c 4595 to 5301 2 to 707   capped   706/715
(98 %)
4 diff
(99.5 %id)
BM873670   .c 4636 to 5096 461 to 1     Submitted on the opposite strand 461/461
(100 %)
0 diff
(100 %id)
BM874625   .c 4636 to 5096 461 to 1     Submitted on the opposite strand 461/461
(100 %)
0 diff
(100 %id)
CB217156 mandible, pooled .c 4654 to 5106 453 to 1     Submitted on the opposite strand 453/453
(100 %)
0 diff
(100 %id)
CB857882 anterior tongue, pooled .c 4658 to 5106 449 to 1     Submitted on the opposite strand 449/449
(100 %)
0 diff
(100 %id)
AW382283 head_neck .c 4693 to 5054 1 to 362       362/362
(100 %)
0 diff
(100 %id)
TI_154103885   .c 4725 to 5592 899 to 33       867/1012
(85 %)
0 diff
(100 %id)
BF057715 pooled germ cell tumors .c 4729 to 5039 311 to 1       311/311
(100 %)
0 diff
(100 %id)
AU253044 neuroblastoma .c 4739 to 5416 16 to 690       675/700
(96 %)
6 diff
(99.2 %id)
AL133817 amygdala .c 4796 to 5347 1 to 552       552/552
(100 %)
0 diff
(100 %id)
AI638194 pooled germ cell tumors .c 4800 to 5308 509 to 1       509/509
(100 %)
0 diff
(100 %id)
DA883131   .c 4808 to 5377 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA886342   .c 4808 to 5380 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
AW342080 carcinoid, lung .c 4842 to 5308 467 to 1       467/467
(100 %)
0 diff
(100 %id)
AA227532 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 4887 to 5283 1 to 397   fully sequenced,   397/397
(100 %)
0 diff
(100 %id)
BF221957 Prostate .c 4896 to 5308 413 to 1       413/413
(100 %)
0 diff
(100 %id)
AA287187 germinal center B cell .c 4915 to 5282 1 to 368   fully sequenced,   368/368
(100 %)
0 diff
(100 %id)
AI074011 B-cell, chronic lymphotic leukemia .c 4979 to 5571 593 to 1       593/593
(100 %)
0 diff
(100 %id)
AI174523   .c 5008 to 5403 396 to 1       396/396
(100 %)
0 diff
(100 %id)
CD672923 eye, Iris .c 5017 to 5541 1 to 525       525/525
(100 %)
0 diff
(100 %id)
AI522103 Kidney .c 5050 to 5569 520 to 1       520/520
(100 %)
0 diff
(100 %id)
FN125028 breast carcinoma .c 5078 to 5176 99 to 3     Submitted on the opposite strand 97/99
(97 %)
0 diff
(100 %id)
AA808191 germinal center B cell .c 5102 to 5569 479 to 12   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 468/468
(100 %)
0 diff
(100 %id)
AI144413 heart .c 5103 to 5569 467 to 1       467/467
(100 %)
0 diff
(100 %id)
AA810748 germinal center B cell .c 5113 to 5569 467 to 11   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 457/457
(100 %)
0 diff
(100 %id)
BM800432 leiomyosarcoma, uterus .c 5159 to 5569 1 to 411   AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 411/411
(100 %)
0 diff
(100 %id)
FN122460 breast carcinoma .c 5184 to 5290 107 to 1     Submitted on the opposite strand 107/107
(100 %)
0 diff
(100 %id)
AI352241   .c 5217 to 5572 356 to 1       356/356
(100 %)
0 diff
(100 %id)
FN169316 breast carcinoma .c 5227 to 5318 94 to 5     Submitted on the opposite strand 90/95
(94 %)
0 diff
(100 %id)
FN141742 breast carcinoma .c 5230 to 5341 106 to 1     Submitted on the opposite strand 106/106
(100 %)
6 diff
(94.4 %id)
AA287097 germinal center B cell .c 5252 to 5569 318 to 1   fully sequenced,   318/318
(100 %)
0 diff
(100 %id)
AA227886 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5253 to 5566 314 to 1   fully sequenced,   314/314
(100 %)
0 diff
(100 %id)
TI_151797813   .c 5348 to 6068 108 to 832       725/1065
(68 %)
14 diff
(98.7 %id)
BM699075 eye, fetal eyes .c 5352 to 5988 1 to 637     Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 637/637
(100 %)
0 diff
(100 %id)
FN143031 breast carcinoma .c 5364 to 5455 99 to 6     Submitted on the opposite strand 94/99
(94 %)
0 diff
(100 %id)
BQ027107 Chondrosarcoma, Left Pubic Bone .c 5598 to 6392 1 to 797     Submitted on the opposite strand 797/797
(100 %)
5 diff
(99.4 %id)
AI807336 pooled .c 5628 to 5924 1 to 297     Submitted on the opposite strand 297/297
(100 %)
0 diff
(100 %id)
FN134328 breast carcinoma .c 5649 to 5750 102 to 1     Submitted on the opposite strand 102/109
(93 %)
0 diff
(100 %id)
AJ711880 heart .c 5818 to 6243 426 to 1     Submitted on the opposite strand 426/426
(100 %)
0 diff
(100 %id)
CA312686 Human Lung Epithelial cells, lung .c 5867 to 6496 629 to 1       629/638
(98 %)
1 diff
(99.9 %id)
AU143950 whole embryo, mainly head .c 5928 to 6482 557 to 1       557/559
(99 %)
8 diff
(98.6 %id)
AU144691 whole embryo, mainly head .c 5928 to 6479 549 to 1       549/559
(98 %)
12 diff
(97.9 %id)
CB242539 Human Lung Epithelial cells, lung .c 5981 to 6673 1 to 693     Submitted on the opposite strand 693/693
(100 %)
1 diff
(99.9 %id)
BU682392 lung .c 5988 to 6597 628 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 610/610
(100 %)
0 diff
(100 %id)
BM932270 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 6002 to 6492 491 to 1     Submitted on the opposite strand 491/492
(99 %)
0 diff
(100 %id)
AI097389 brain, glioblastoma (pooled) .c 6003 to 6483 481 to 1       481/481
(100 %)
0 diff
(100 %id)
AI424100 brain, glioblastoma (pooled) .c 6003 to 6486 484 to 1       484/484
(100 %)
0 diff
(100 %id)
AI589166 brain, glioblastoma (pooled) .c 6009 to 6479 471 to 1       471/471
(100 %)
0 diff
(100 %id)
BM683891 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 6014 to 6482 1 to 469   AAA Submitted on the opposite strand 469/469
(100 %)
0 diff
(100 %id)
AI362674 brain, glioblastoma (pooled) .c 6036 to 6482 447 to 1       447/447
(100 %)
0 diff
(100 %id)
CR612521 fetal brain .c 6095 to 7839 1 to 1745   tiling clone,   1745/1745
(100 %)
0 diff
(100 %id)
AA865756 germinal center B cell .c 6101 to 6606 506 to 1       506/506
(100 %)
0 diff
(100 %id)
BU070156 insulinoma, Pancreas .c 6105 to 6479 8 to 382   fully sequenced, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 375/382
(98 %)
8 diff
(98.0 %id)
BF002018 colon, colon tumor, RER+ .c 6117 to 6481 365 to 1       365/365
(100 %)
0 diff
(100 %id)
FN052398 breast carcinoma .c 6124 to 6218 95 to 1     Submitted on the opposite strand 95/95
(100 %)
1 diff
(99.0 %id)
AI431709 Kidney .c 6138 to 6479 342 to 1       342/342
(100 %)
0 diff
(100 %id)
BF434474 Kidney .c 6138 to 6479 342 to 1       342/342
(100 %)
0 diff
(100 %id)
BU069915 insulinoma, Pancreas .c 6144 to 6464 321 to 1   fully sequenced, Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 321/321
(100 %)
0 diff
(100 %id)
CD678599 eye, Trabecular meshwork .c 6148 to 6688 1 to 541       541/541
(100 %)
0 diff
(100 %id)
AI090983 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 6272 to 6598 327 to 1       327/327
(100 %)
0 diff
(100 %id)
AI333674 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 6275 to 6597 323 to 1       323/323
(100 %)
0 diff
(100 %id)
BM669373 eye, fetal eyes .c 6311 to 6939 647 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 629/629
(100 %)
0 diff
(100 %id)
BM665959 eye, fetal eyes .c 6343 to 6939 615 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 597/597
(100 %)
0 diff
(100 %id)
BF063826 colon, colon tumor, RER+ .c 6430 to 6964 535 to 1       535/535
(100 %)
0 diff
(100 %id)
AA987959 carcinoid, lung .c 6504 to 6939 436 to 1       436/436
(100 %)
0 diff
(100 %id)
AU253045 neuroblastoma .c 6521 to 7207 698 to 17       682/700
(97 %)
0 diff
(100 %id)
TI_149281995   .c 6603 to 7213 739 to 128       612/819
(74 %)
0 diff
(100 %id)
F07828 brain, total brain .c 6696 to 6943 1 to 248       248/248
(100 %)
0 diff
(100 %id)
AA861728   .c 6830 to 7165 336 to 1       336/336
(100 %)
0 diff
(100 %id)
FN056223 breast carcinoma .c 6865 to 6919 55 to 1     Submitted on the opposite strand 55/55
(100 %)
0 diff
(100 %id)
FN119143 breast carcinoma .c 6865 to 6933 68 to 3     Submitted on the opposite strand 66/68
(97 %)
0 diff
(100 %id)
BM703958 eye, Retina Foveal and Macular .c 6921 to 7215 1 to 296   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 296/296
(100 %)
1 diff
(99.7 %id)
AA283460   .c 7027 to 7200 174 to 1       174/174
(100 %)
0 diff
(100 %id)
AA649018 germinal center B cell .c 7032 to 7207 192 to 17   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 176/176
(100 %)
0 diff
(100 %id)
BM664113 eye, Retina Foveal and Macular .c 7054 to 7215 181 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 163/163
(100 %)
0 diff
(100 %id)
AW612439 Kidney .c 7055 to 7430 376 to 1       376/376
(100 %)
0 diff
(100 %id)
AA827787 germinal center B cell .c 7068 to 7207 150 to 11   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 140/140
(100 %)
0 diff
(100 %id)
FN134947 breast carcinoma .c 7071 to 7173 100 to 1     Submitted on the opposite strand 100/104
(96 %)
3 diff
(97.2 %id)
CR604143 Neuroblastoma Cot 10-normalized .c 7075 to 7875 1 to 801       801/801
(100 %)
0 diff
(100 %id)
AL521622 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 7075 to 7875 1 to 801   fully sequenced,   801/801
(100 %)
2 diff
(99.8 %id)
Z45039 brain, total brain .c 7103 to 7341 1 to 239       239/239
(100 %)
0 diff
(100 %id)
AL521621 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 7120 to 7860 741 to 1   fully sequenced,   741/741
(100 %)
7 diff
(99.1 %id)
FN107987 breast carcinoma .c 7470 to 7555 84 to 1     Submitted on the opposite strand 84/88
(95 %)
2 diff
(97.8 %id)
FN156494 breast carcinoma .c 7614 to 7724 1 to 111       111/111
(100 %)
0 diff
(100 %id)
BE857360 brain, glioblastoma (pooled) .c 7809 to 8328 521 to 2   tiling clone,   520/521
(99 %)
0 diff
(100 %id)
BJ990008 hepatoblastoma .c 7820 to 8297 480 to 1       480/480
(100 %)
2 diff
(99.6 %id)
AI418633 brain, glioblastoma (pooled) .c 7892 to 8327 436 to 1       436/436
(100 %)
0 diff
(100 %id)
AA953387 pooled .c 8009 to 8323 315 to 1       315/315
(100 %)
0 diff
(100 %id)
FN091323 breast carcinoma .c 8025 to 8135 1 to 111       111/111
(100 %)
0 diff
(100 %id)
F03966 brain, total brain .c 8060 to 8331 273 to 1   tiling clone,   273/273
(100 %)
3 diff
(99.0 %id)
AI784460 anaplastic oligodendroglioma, brain .c 8078 to 8323 246 to 1       246/246
(100 %)
0 diff
(100 %id)
F04082 brain, total brain .c 8094 to 8323 231 to 1       231/231
(100 %)
1 diff
(99.6 %id)
FN170807 breast carcinoma .c 8247 to 8322 78 to 7     Submitted on the opposite strand 72/83
(86 %)
0 diff
(100 %id)
AK122765   .d 1 to 2786 2 to 2787 S231G tiling clone, available from FLJ,   2787/2787
(100 %)
1 diff
(100.0 %id)
NM_003199.2   .d 1 to 8319 2 to 8320 exact RefSeq,   8320/8320
(100 %)
0 diff
(100 %id)
M74719 thymus .d 413 to 2912 1 to 2500 exact tiling clone,   2500/2500
(100 %)
5 diff
(99.8 %id)
BC125085 PCR rescued clones .d 586 to 2766 1 to 2181 exact tiling clone,   2181/2181
(100 %)
0 diff
(100 %id)
X52079   .d 759 to 2795 13 to 2049       2036/2049
(99 %)
8 diff
(99.7 %id)
AW163368 brain, frontal lobe .d 978 to 1530 111 to 662       550/662
(83 %)
17 diff
(97.5 %id)
BX447595 B cells (Ramos cell line) .d 1265 to 1813 68 to 633   fully sequenced,   545/612
(89 %)
33 diff
(94.7 %id)
BX447594 B cells (Ramos cell line) .d 1783 to 2657 892 to 5   fully sequenced,   888/892
(99 %)
24 diff
(97.4 %id)
BX420631 brain, fetal brain .d 1899 to 2892 1 to 981   AAA   981/1033
(94 %)
19 diff
(98.2 %id)
DB508692 testis .d 2020 to 2712 1 to 692     Submitted on the opposite strand 692/692
(100 %)
5 diff
(99.3 %id)
TI_154105142   .d 2098 to 2801 787 to 84   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 704/706
(99 %)
1 diff
(99.9 %id)
CA446423 Chondrosarcoma, Left Pubic Bone .d 2117 to 2801 697 to 13   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 685/685
(100 %)
1 diff
(99.9 %id)
BE675842 B-cell, chronic lymphotic leukemia .d 2124 to 2801 678 to 1       678/678
(100 %)
6 diff
(99.2 %id)
BM506741 insulinoma, Pancreas .d 2160 to 2816 658 to 1       658/658
(100 %)
10 diff
(98.5 %id)
TI_154132675   .d 2170 to 2801 732 to 98   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 635/859
(73 %)
10 diff
(98.9 %id)
AA581743 Kidney, kidney tumor .d 2183 to 2801 611 to 1       611/611
(100 %)
14 diff
(97.8 %id)
AA669136 lung .d 2245 to 2802 558 to 1       558/558
(100 %)
0 diff
(100 %id)
AW157312 brain, frontal lobe .d 2245 to 2809 565 to 1       565/565
(100 %)
1 diff
(99.9 %id)
BG058782 blood, lymphocyte .d 2247 to 2794 554 to 7       548/554
(98 %)
1 diff
(99.9 %id)
DC351312 brain .e 1 to 532 1 to 532   tiling clone,   532/532
(100 %)
0 diff
(100 %id)
AK299169   .e 3 to 2747 1 to 2745 exact tiling clone,   2745/2745
(100 %)
1 diff
(100.0 %id)
DC355422   .e 7 to 532 1 to 527       527/527
(100 %)
1 diff
(99.9 %id)
DC351484 brain .e 10 to 580 1 to 571       571/571
(100 %)
1 diff
(99.9 %id)
DC371933   .e 11 to 461 1 to 453       453/453
(100 %)
2 diff
(99.6 %id)
DC350309 brain .e 12 to 521 1 to 513       513/513
(100 %)
1 diff
(99.9 %id)
DC350489 brain .e 12 to 567 1 to 555       555/555
(100 %)
3 diff
(99.5 %id)
DC351821 brain .e 12 to 558 1 to 549       549/549
(100 %)
2 diff
(99.7 %id)
DC375854 brain .e 12 to 496 1 to 483       483/483
(100 %)
3 diff
(99.4 %id)
DC376321 brain .e 12 to 554 1 to 542       542/542
(100 %)
1 diff
(99.9 %id)
DC341169 thalamus .e 39 to 476 1 to 438       438/438
(100 %)
0 diff
(100 %id)
BX492368   .e 39 to 518 10 to 490       481/490
(98 %)
6 diff
(98.8 %id)
DC384652   .e 39 to 583 1 to 545       545/545
(100 %)
0 diff
(100 %id)
DC387212   .e 40 to 612 1 to 573       573/573
(100 %)
4 diff
(99.4 %id)
DC350494 brain .e 71 to 496 1 to 426       426/426
(100 %)
0 diff
(100 %id)
DC376396 brain .e 71 to 532 1 to 463       463/463
(100 %)
3 diff
(99.4 %id)
DC376613 brain .e 76 to 531 1 to 456       456/458
(99 %)
2 diff
(99.6 %id)
FN143653 breast carcinoma .e 108 to 211 102 to 1     Submitted on the opposite strand 102/102
(100 %)
1 diff
(99.1 %id)
DC320108 brain .e 457 to 1022 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
AK301144 Spleen .f 1 to 2572 1 to 2572 exact tiling clone,   2572/2572
(100 %)
0 diff
(100 %id)
DC390184 Spleen .f 1 to 391 1 to 391       391/391
(100 %)
0 diff
(100 %id)
DC351816 brain .f 26 to 581 1 to 558       558/558
(100 %)
3 diff
(99.5 %id)
BM755137 stomach .f 136 to 430 1 to 293       293/432
(67 %)
1 diff
(99.8 %id)
DC350214 brain .f 154 to 724 1 to 571       571/571
(100 %)
0 diff
(100 %id)
DA882840   .g 1 to 541 8 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
AK096862   .g 1 to 2392 5 to 2396 exact tiling clone, available from FLJ,   2396/2396
(100 %)
0 diff
(100 %id)
DA888260   .g 1 to 527 5 to 533   capped   532/532
(100 %)
2 diff
(99.7 %id)
DA885035   .g 1 to 535 27 to 561   capped   537/560
(95 %)
7 diff
(98.8 %id)
DA588625 lung .g 1 to 561 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA881502   .g 1 to 545 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA885502   .g 1 to 541 2 to 542   capped   541/549
(98 %)
0 diff
(100 %id)
AA296544 umbilical vein .g 22 to 348 1 to 333       333/333
(100 %)
6 diff
(98.2 %id)
DA841805 placenta .g 81 to 627 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DB208920 trachea .g 83 to 569 2 to 488   capped   487/487
(100 %)
1 diff
(99.8 %id)
BQ707458 Spleen .g 136 to 935 1 to 810       810/971
(83 %)
25 diff
(97.5 %id)
DB330469   .g 1862 to 2392 532 to 1       532/532
(100 %)
1 diff
(99.9 %id)
DB106801 thymus .h 1 to 568 2 to 569   tiling clone, capped   568/568
(100 %)
0 diff
(100 %id)
BJ989625 hepatoblastoma .h 537 to 1118 1 to 583   tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
BJ989626 hepatoblastoma .h 1780 to 2319 540 to 1   tiling clone,   540/540
(100 %)
0 diff
(100 %id)
AK095041 hippocampus .i 1 to 2264 1 to 2264 exact tiling clone, available from FLJ,   2264/2264
(100 %)
0 diff
(100 %id)
DA515257 brain .i 302 to 851 2 to 553   capped   552/552
(100 %)
4 diff
(99.3 %id)
AU279553   .j 1 to 530 1 to 530   tiling clone,   530/530
(100 %)
0 diff
(100 %id)
CR624281 B cells (Ramos cell line) .j 337 to 1799 1 to 1463   tiling clone,   1463/1463
(100 %)
0 diff
(100 %id)
CN404346 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .j 659 to 1354 13 to 709       697/709
(98 %)
1 diff
(99.9 %id)
DC353822 brain .k 1 to 456 1 to 456   tiling clone,   456/458
(99 %)
1 diff
(99.8 %id)
DC358611 lung .k 23 to 619 1 to 598       598/598
(100 %)
3 diff
(99.5 %id)
AK316165 brain .k 35 to 1872 1 to 1838 exact tiling clone,   1838/1838
(100 %)
1 diff
(100.0 %id)
DC351531 brain .k 35 to 572 1 to 538       538/538
(100 %)
0 diff
(100 %id)
DC349942 brain .k 44 to 625 1 to 582       582/583
(99 %)
1 diff
(99.9 %id)
DC350024 brain .k 44 to 592 1 to 549       549/549
(100 %)
0 diff
(100 %id)
AK300636   .l 1 to 1929 1 to 1929 exact tiling clone,   1929/1930
(99 %)
2 diff
(99.9 %id)
DC385252   .l 1 to 557 1 to 557       557/557
(100 %)
1 diff
(99.9 %id)
AK300612   .m 1 to 2184 1 to 2184 exact tiling clone,   2184/2184
(100 %)
1 diff
(100.0 %id)
DC384781   .m 1 to 559 1 to 559       559/559
(100 %)
0 diff
(100 %id)
CD691430 normal nasopharynx .m 225 to 664 17 to 456       440/458
(96 %)
12 diff
(97.4 %id)
DC393988 esophageal, tumor tissue .m 225 to 794 1 to 570       570/570
(100 %)
0 diff
(100 %id)
DC394526 esophageal, tumor tissue .m 225 to 797 1 to 573       573/573
(100 %)
0 diff
(100 %id)
AA331814 Embryo, 8 weeks .m 256 to 540 1 to 285       285/285
(100 %)
0 diff
(100 %id)
AW965280   .m 257 to 384 1 to 129       129/248
(52 %)
5 diff
(98.0 %id)
AV760529 bone marrow .n 1 to 589 586 to 1     Submitted on the opposite strand 586/674
(86 %)
10 diff
(98.6 %id)
AV762661 bone marrow .n 5 to 589 585 to 1   tiling clone, Submitted on the opposite strand 585/649
(90 %)
4 diff
(99.4 %id)
AV758964 bone marrow .n 6 to 589 582 to 1   AAA Submitted on the opposite strand 582/651
(89 %)
6 diff
(99.1 %id)
AV762134 bone marrow .n 8 to 589 580 to 1     Submitted on the opposite strand 580/667
(86 %)
9 diff
(98.7 %id)
AV761907 bone marrow .n 8 to 589 578 to 1   tiling clone, Submitted on the opposite strand 578/752
(76 %)
8 diff
(99.0 %id)
AI458536 carcinoid, lung .n 14 to 303 1 to 290   tiling clone, Submitted on the opposite strand 290/290
(100 %)
2 diff
(99.4 %id)
AV762624 bone marrow .n 16 to 589 566 to 1     Submitted on the opposite strand 566/622
(90 %)
19 diff
(97.0 %id)
AV759368 bone marrow .n 41 to 603 569 to 12     Submitted on the opposite strand 558/716
(77 %)
0 diff
(100 %id)
DA517804 brain .n 68 to 616 2 to 547   tiling clone, capped   546/546
(100 %)
2 diff
(99.7 %id)
DA383236 thalamus .n 78 to 631 2 to 555   capped   554/554
(100 %)
3 diff
(99.5 %id)
DC413792 trachea .n 597 to 1332 1 to 738       738/738
(100 %)
6 diff
(99.2 %id)
AU118581 whole embryo, mainly head .n 598 to 1457 2 to 860   capped   859/859
(100 %)
8 diff
(99.1 %id)
AU120339 whole embryo, mainly body .n 603 to 1300 2 to 699   capped   698/698
(100 %)
1 diff
(99.9 %id)
AU122270 mammary gland .n 612 to 1436 2 to 824   tiling clone, capped   821/826
(99 %)
3 diff
(99.7 %id)
AU120273 whole embryo, mainly body .n 630 to 1483 2 to 860   capped   857/859
(99 %)
17 diff
(98.1 %id)
AK300038   .n 633 to 2581 1 to 1949 exact tiling clone,   1949/1949
(100 %)
0 diff
(100 %id)
AW403041 lymph .n 642 to 1088 7 to 453     Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 447/453
(98 %)
7 diff
(98.5 %id)
BP310928 brain .n 709 to 1295 1 to 587       587/587
(100 %)
0 diff
(100 %id)
DC421358 uterus .n 736 to 1325 1 to 590       590/590
(100 %)
0 diff
(100 %id)
BP197511 adrenal gland .n 744 to 1376 1 to 633       633/636
(99 %)
28 diff
(95.6 %id)
BP197527 adrenal gland .n 744 to 1324 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP197539 adrenal gland .n 744 to 1324 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA941385 Spleen .n 745 to 1347 2 to 603   capped   602/602
(100 %)
2 diff
(99.7 %id)
M74718 thymus .n 752 to 2587 5 to 1840   tiling clone,   1836/1840
(99 %)
1 diff
(100.0 %id)
DA819510   .n 756 to 1306 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB316979 brain .n 1860 to 2406 547 to 1       547/547
(100 %)
0 diff
(100 %id)
AW575047 lymph .n 1867 to 2421 566 to 12   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 555/562
(98 %)
2 diff
(99.7 %id)
AU147892 mammary gland .n 1869 to 2421 554 to 1       554/571
(97 %)
9 diff
(98.5 %id)
AU145106 whole embryo, mainly head .n 1872 to 2421 550 to 1       550/550
(100 %)
7 diff
(98.8 %id)
AU146430 whole embryo, mainly body .n 1880 to 2421 540 to 1       540/543
(99 %)
18 diff
(96.7 %id)
DB358940 whole embryo, mainly body .n 1958 to 2421 465 to 1       465/570
(81 %)
3 diff
(99.5 %id)
DC426901 trachea .n 2019 to 2421 407 to 1       407/436
(93 %)
8 diff
(98.2 %id)
AW402684 lymph .o 1 to 534 7 to 540   tiling clone, Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 534/540
(98 %)
6 diff
(98.9 %id)
AW575235 lymph .o 1193 to 1768 587 to 12   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 576/576
(100 %)
1 diff
(99.9 %id)
AL518903 brain, neuroblastoma, neuroblastoma cells .p 1 to 958 1 to 957   tiling clone, fully sequenced,   957/957
(100 %)
1 diff
(99.9 %id)
DA475416   .p 94 to 644 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
AU119763 whole embryo, mainly head .p 173 to 980 2 to 806   capped   805/805
(100 %)
10 diff
(98.8 %id)
DA472752   .p 177 to 743 2 to 568   tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
AL518902 brain, neuroblastoma, neuroblastoma cells .p 928 to 1818 891 to 1   tiling clone, fully sequenced,   891/891
(100 %)
11 diff
(98.8 %id)
AU146023 whole embryo, mainly head .p 1439 to 2006 567 to 1   tiling clone,   567/568
(99 %)
15 diff
(97.4 %id)
CR614823 neuroblastoma .q 1 to 1815 1 to 1815 exact tiling clone,   1815/1815
(100 %)
0 diff
(100 %id)
BQ881046 dorsal root ganglia .q 1231 to 1666 1 to 439   AAA   439/1065
(41 %)
13 diff
(98.8 %id)
DB040143 testis .r 1 to 554 2 to 555   tiling clone, capped   554/554
(100 %)
1 diff
(99.9 %id)
CR933675 testis .r 525 to 6533 223 to 6230   tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 6013/6230
(96 %)
16 diff
(99.8 %id)
AL118675 amygdala .r 3353 to 4013 1 to 661       661/662
(99 %)
1 diff
(99.9 %id)
AL692010   .r 3382 to 3972 1 to 593       593/593
(100 %)
6 diff
(99.0 %id)
BX508270   .r 3818 to 4526 1 to 710   tiling clone,   710/710
(100 %)
1 diff
(99.9 %id)
BF958671 nervous_normal .r 5075 to 5578 1 to 505       505/505
(100 %)
15 diff
(97.1 %id)
CV393075 nervous_normal .r 5118 to 5662 545 to 1     Submitted on the opposite strand 545/545
(100 %)
9 diff
(98.4 %id)
BF956385 nervous_normal .r 5121 to 5651 533 to 4   tiling clone,   530/533
(99 %)
0 diff
(100 %id)
FN141741 breast carcinoma .r 5375 to 5481 108 to 1     Submitted on the opposite strand 108/109
(99 %)
2 diff
(98.2 %id)
FN083064 breast carcinoma .r 5413 to 5494 1 to 84       84/84
(100 %)
5 diff
(94.1 %id)
FN055729 breast carcinoma .r 5850 to 5948 1 to 100       100/100
(100 %)
1 diff
(99.0 %id)
AA232759 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .r 6154 to 6485 334 to 2   tiling clone, Submitted on the opposite strand 333/334
(99 %)
0 diff
(100 %id)
FN054307 breast carcinoma .r 6188 to 6289 1 to 102       102/102
(100 %)
0 diff
(100 %id)
BP382451 adipose tissue .s 1 to 636 1 to 636   tiling clone,   636/636
(100 %)
3 diff
(99.6 %id)
AU121113 whole embryo, mainly body .s 65 to 772 2 to 711   tiling clone, capped   710/710
(100 %)
2 diff
(99.8 %id)
BP199717 brain .s 67 to 648 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
AU120551 whole embryo, mainly body .s 69 to 806 2 to 745   capped   744/744
(100 %)
10 diff
(98.7 %id)
AU140019 placenta .s 71 to 686 2 to 616   capped   615/615
(100 %)
1 diff
(99.9 %id)
DC405161 thymus .s 153 to 711 1 to 559       559/559
(100 %)
0 diff
(100 %id)
DC375246 brain .s 164 to 738 1 to 575       575/575
(100 %)
1 diff
(99.9 %id)
BP347041 brain .s 182 to 759 1 to 579       579/582
(99 %)
16 diff
(97.3 %id)
AB209741 aorta endothelial cell .s 184 to 5537 1 to 5352 exact tiling clone,   5352/5352
(100 %)
5 diff
(100.0 %id)
M74720 thymus .s 200 to 320 1 to 120       120/120
(100 %)
1 diff
(99.2 %id)
DA804694 brain .s 1425 to 1970 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA809569 brain .s 2146 to 2679 2 to 535   capped   534/534
(100 %)
2 diff
(99.7 %id)
BF592591 breast, lobullar carcinoma in situ .s 2597 to 2851 35 to 289     Submitted on the opposite strand 255/337
(75 %)
2 diff
(99.5 %id)
AL138307 brain .s 2631 to 3171 1 to 541       541/541
(100 %)
0 diff
(100 %id)
CK819877 Islets of Langerhans, Pancreas .s 2747 to 3342 1 to 596   tiling clone,   596/596
(100 %)
0 diff
(100 %id)
BM142073 Islets of Langerhans, Pancreas .s 2763 to 3243 1 to 481       481/481
(100 %)
1 diff
(99.8 %id)
BF349444 head_neck .s 2948 to 3204 1 to 257       257/257
(100 %)
5 diff
(98.1 %id)
AA481958 ovarian tumor, ovary .s 3566 to 4041 1 to 472       472/475
(99 %)
13 diff
(97.3 %id)
AK026674 Human lung .s 3592 to 5522 1 to 1930   available from FLJ, AAA Possibly primed on the genome, locally A rich (20/23 A in genome downstream of last aligned base) 1930/1930
(100 %)
4 diff
(99.8 %id)
BX477694   .s 3702 to 4340 1 to 640   tiling clone,   640/640
(100 %)
2 diff
(99.7 %id)
CN347869 embryonic stem cells, DMSO-treated H9 cellline .s 3924 to 4574 1 to 651       651/651
(100 %)
4 diff
(99.4 %id)
R10666 liver and spleen .s 3925 to 4298 1 to 387     Submitted on the opposite strand 387/388
(99 %)
20 diff
(94.9 %id)
AI821559 ovarian tumor, ovary .s 4028 to 4587 560 to 1       560/560
(100 %)
1 diff
(99.9 %id)
BF435682 pooled .s 4064 to 4587 524 to 1       524/524
(100 %)
1 diff
(99.9 %id)
AI741396 pooled .s 4081 to 4590 514 to 5       510/514
(99 %)
0 diff
(100 %id)
BF435352 pooled .s 4101 to 4587 487 to 1       487/487
(100 %)
1 diff
(99.8 %id)
AA837089 germinal center B cell .s 4143 to 4603 1 to 461       461/461
(100 %)
0 diff
(100 %id)
AA290666 ovarian tumor, ovary .s 4293 to 4587 295 to 1       295/295
(100 %)
0 diff
(100 %id)
DB380663 placenta .s 5000 to 5529 531 to 1       531/539
(98 %)
27 diff
(95.0 %id)
DB327330 brain .s 5004 to 5537 534 to 1   tiling clone,   534/534
(100 %)
0 diff
(100 %id)
DB359291 whole embryo, mainly body .s 5018 to 5537 517 to 1       517/528
(97 %)
17 diff
(96.8 %id)
AU147004 whole embryo, mainly body .s 5033 to 5537 502 to 1       502/520
(96 %)
8 diff
(98.5 %id)
BM805150 ovary (pool of 3) .t 1 to 867 31 to 899   tiling clone,   869/1075
(80 %)
39 diff
(96.4 %id)
BU615862 Bone, Subchondral Bone .t 794 to 1418 624 to 1   tiling clone,   624/624
(100 %)
9 diff
(98.6 %id)
DC349911 brain .u 1 to 566 9 to 574   tiling clone,   566/566
(100 %)
1 diff
(99.9 %id)
DC412210 kidney, tumor tissue .u 119 to 665 35 to 581   tiling clone,   547/581
(94 %)
6 diff
(99.0 %id)
BX401697   .u 202 to 842 18 to 659       643/659
(97 %)
9 diff
(98.7 %id)
W69096 heart .u 566 to 1006 1 to 442   tiling clone, fully sequenced,   442/442
(100 %)
1 diff
(99.8 %id)
AW295702   .u 955 to 1250 1 to 296   tiling clone, Submitted on the opposite strand 296/306
(96 %)
4 diff
(98.7 %id)
W69216 heart .u 975 to 1419 447 to 1   tiling clone, fully sequenced,   447/447
(100 %)
2 diff
(99.6 %id)
R85388 liver and spleen .u 1069 to 1418 354 to 1       354/354
(100 %)
6 diff
(98.4 %id)
AA677237 liver and spleen .u 1199 to 1398 200 to 1       200/200
(100 %)
0 diff
(100 %id)
AV763059 bone marrow .va 1 to 515 505 to 1   tiling clone, Submitted on the opposite strand 505/506
(99 %)
6 diff
(98.9 %id)
FN058116 breast carcinoma .va 38 to 89 1 to 51   tiling clone,   51/52
(98 %)
2 diff
(96.2 %id)
AV763919 bone marrow .va 96 to 515 410 to 1     Submitted on the opposite strand 410/411
(99 %)
16 diff
(96.2 %id)
AV758939 bone marrow .va 136 to 515 371 to 1   tiling clone, Submitted on the opposite strand 371/372
(99 %)
11 diff
(97.1 %id)
CV361515 bladder_tumor .va 247 to 526 281 to 3   tiling clone, Submitted on the opposite strand 279/300
(93 %)
0 diff
(100 %id)
FN117894 breast carcinoma .va 522 to 600 1 to 79       79/79
(100 %)
6 diff
(92.5 %id)
BE798324 lung, small cell carcinoma .va 522 to 1329 13 to 824   tiling clone,   810/943
(85 %)
17 diff
(98.2 %id)
BP265073 lung .va 524 to 1207 1 to 686       686/875
(78 %)
11 diff
(98.8 %id)
AV761952 bone marrow .va 528 to 983 1 to 446       446/446
(100 %)
8 diff
(98.3 %id)
BP195229 brain .va 529 to 1112 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
CD704332 normal nasopharynx .va 535 to 991 35 to 489       455/489
(93 %)
8 diff
(98.4 %id)
BP198825 brain .va 537 to 1035 1 to 498       498/582
(85 %)
2 diff
(99.7 %id)
DC295534 synovial membrane tissue from rheumatioidarthritis .va 537 to 1091 1 to 555       555/555
(100 %)
0 diff
(100 %id)
DC295608 synovial membrane tissue from rheumatioidarthritis .va 537 to 1098 1 to 562       562/562
(100 %)
0 diff
(100 %id)
DC392293 stomach .va 543 to 1093 1 to 551       551/551
(100 %)
0 diff
(100 %id)
CD684856 normal nasopharynx .va 544 to 989 15 to 460       446/460
(96 %)
5 diff
(99.0 %id)
CD694669 normal nasopharynx .va 549 to 868 33 to 352       320/352
(90 %)
7 diff
(98.1 %id)
CD691846 normal nasopharynx .va 550 to 991 23 to 468       446/468
(95 %)
11 diff
(97.7 %id)
CD694170 normal nasopharynx .va 550 to 1078 11 to 539       529/539
(98 %)
6 diff
(98.9 %id)
CD694310 normal nasopharynx .va 550 to 1075 23 to 548       526/548
(95 %)
7 diff
(98.8 %id)
CD707559 normal nasopharynx .va 550 to 1100 20 to 569       550/569
(96 %)
6 diff
(99.0 %id)
BP221774 colon .va 550 to 1119 1 to 571       571/571
(100 %)
4 diff
(99.3 %id)
AV764280 bone marrow .va 550 to 1209 1 to 659       659/681
(96 %)
36 diff
(94.8 %id)
DC364859   .va 550 to 1081 1 to 533       533/533
(100 %)
2 diff
(99.7 %id)
DC390021 Spleen .va 550 to 1139 1 to 590       590/590
(100 %)
0 diff
(100 %id)
CD356274 Blood vessels - aorta, basilar and artery .va 552 to 1218 1 to 674       674/762
(88 %)
21 diff
(97.3 %id)
DC358324 lung .va 553 to 1135 1 to 583       583/592
(98 %)
0 diff
(100 %id)
BE795544 lung, small cell carcinoma .va 553 to 1329 1 to 772       775/1014
(76 %)
8 diff
(99.3 %id)
TI_57219840   .va 554 to 1385 37 to 866   tiling clone,   830/866
(95 %)
10 diff
(98.9 %id)
TI_57234817   .va 554 to 1445 65 to 961       897/961
(93 %)
16 diff
(98.4 %id)
CF138302 lymph .va 555 to 1037 1 to 483       483/483
(100 %)
6 diff
(98.8 %id)
BI753610 brain .va 555 to 1385 1 to 829   tiling clone,   829/829
(100 %)
4 diff
(99.6 %id)
BI909583 leukocyte .va 555 to 1445 1 to 896   tiling clone,   896/896
(100 %)
10 diff
(98.9 %id)
DC360475   .va 555 to 1097 1 to 543       543/543
(100 %)
0 diff
(100 %id)
DC380594 placenta .va 556 to 1103 1 to 548       548/548
(100 %)
0 diff
(100 %id)
DC378693   .va 559 to 1114 1 to 556       556/556
(100 %)
0 diff
(100 %id)
CD698397 normal nasopharynx .va 562 to 1173 26 to 637       612/637
(96 %)
5 diff
(99.3 %id)
TI_154168215   .va 562 to 1057 80 to 575       496/496
(100 %)
1 diff
(99.8 %id)
CD693069 normal nasopharynx .va 563 to 1064 15 to 516       502/516
(97 %)
6 diff
(98.9 %id)
BM477342 lymph, lymphoma, cell line .va 563 to 1488 1 to 930   tiling clone,   930/1031
(90 %)
17 diff
(98.4 %id)
BF796414 lymph, lymphoma, cell line .va 568 to 1328 1 to 760       760/935
(81 %)
19 diff
(98.0 %id)
TI_154139127   .va 568 to 1196 80 to 708       629/629
(100 %)
1 diff
(99.9 %id)
TI_154139553   .va 568 to 1191 79 to 701       623/624
(99 %)
15 diff
(97.6 %id)
CD698884 normal nasopharynx .va 576 to 1103 26 to 554       529/554
(95 %)
7 diff
(98.8 %id)
DC412430 kidney, tumor tissue .va 591 to 1157 1 to 567       567/567
(100 %)
0 diff
(100 %id)
BP381363 adipose tissue .va 594 to 1208 1 to 615       615/615
(100 %)
1 diff
(99.9 %id)
DC389116 Spleen .va 608 to 1172 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
BP233136 muscle .va 610 to 1194 1 to 585       585/585
(100 %)
0 diff
(100 %id)
AL110357 brain .va 614 to 1175 9 to 570       562/562
(100 %)
1 diff
(99.9 %id)
DC419118 stomach, tumor tissue .va 614 to 1068 9 to 463       455/461
(98 %)
1 diff
(99.8 %id)
FN172031 breast carcinoma .va 1453 to 1552 1 to 100   tiling clone,   100/100
(100 %)
0 diff
(100 %id)
DC375084 brain .vb 1 to 563 7 to 569   tiling clone,   563/569
(98 %)
6 diff
(99.0 %id)
BP230319 brain .vb 212 to 792 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DC304656 cerebellum .vb 241 to 811 1 to 571       571/571
(100 %)
0 diff
(100 %id)
DC318892 brain .vb 277 to 827 1 to 551   tiling clone,   551/551
(100 %)
1 diff
(99.9 %id)
BP230971 brain .vb 280 to 862 1 to 582   tiling clone,   582/582
(100 %)
2 diff
(99.7 %id)
BQ574248 Chondrosarcoma Grade II, Left Pelvis .vb 788 to 1441 672 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 654/654
(100 %)
2 diff
(99.7 %id)
DA847258 placenta .vc 1 to 557 2 to 557   capped   556/556
(100 %)
3 diff
(99.5 %id)
DA889176   .vc 1 to 552 2 to 553   tiling clone, capped   552/552
(100 %)
0 diff
(100 %id)
DA575640   .vc 5 to 531 2 to 529   capped   528/528
(100 %)
1 diff
(99.9 %id)
DA090209 cerebellum .vc 7 to 576 2 to 570   capped   569/569
(100 %)
3 diff
(99.5 %id)
DC407379 thymus .vc 52 to 615 1 to 564       564/564
(100 %)
0 diff
(100 %id)
DC384333   .vc 124 to 678 1 to 558       558/565
(98 %)
4 diff
(99.3 %id)
DC349986 brain .vc 360 to 685 1 to 326       326/326
(100 %)
0 diff
(100 %id)
DC303112 cerebellum .vc 473 to 1032 1 to 560       560/560
(100 %)
0 diff
(100 %id)
DC298029   .vc 487 to 1066 1 to 580       580/580
(100 %)
0 diff
(100 %id)
DC326217 caudate nucleus .vc 487 to 1010 1 to 524       524/524
(100 %)
0 diff
(100 %id)
BP350339 brain .vc 487 to 1070 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BP373777 umbilical cord .vc 487 to 1066 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
CD693507 normal nasopharynx .vc 495 to 999 9 to 514       506/514
(98 %)
9 diff
(98.3 %id)
CD707487 normal nasopharynx .vc 499 to 704 16 to 220       205/220
(93 %)
6 diff
(97.3 %id)
DC389466 Spleen .vc 503 to 1096 1 to 594   tiling clone,   594/594
(100 %)
2 diff
(99.7 %id)
DC392647 stomach .vc 504 to 1069 1 to 568       568/568
(100 %)
2 diff
(99.7 %id)
DC319180 brain .vc 505 to 1094 1 to 591       591/591
(100 %)
3 diff
(99.5 %id)
DT218588 brain .vc 505 to 690 1 to 186       186/186
(100 %)
0 diff
(100 %id)
DC316213 amygdala .vc 507 to 1081 1 to 576       576/576
(100 %)
2 diff
(99.7 %id)
DC360513   .vc 507 to 1021 1 to 515       515/515
(100 %)
0 diff
(100 %id)
DC385486 rectum .vc 511 to 1073 1 to 563       563/563
(100 %)
0 diff
(100 %id)
DC297571   .vc 512 to 1037 1 to 527       527/527
(100 %)
1 diff
(99.9 %id)
BQ435271 leiomyosarcoma, uterus .vc 606 to 1440 1 to 846 Q207T A208G S209L S210I S211V ... tiling clone,   846/846
(100 %)
16 diff
(98.2 %id)
BP206418 coronary artery .vd 1 to 581 2 to 582   tiling clone,   582/582
(100 %)
7 diff
(98.8 %id)
BG337255 leiomyosarcoma cell line, uterus .vd 40 to 791 1 to 752   tiling clone,   752/752
(100 %)
3 diff
(99.7 %id)
BP235745 coronary artery .ve 1 to 582 1 to 582   tiling clone,   582/582
(100 %)
0 diff
(100 %id)
BP211580 cerebrum .ve 17 to 599 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
TI_652739982   .ve 62 to 845 12 to 792 N117Y P178R S203T S213R F215I ... tiling clone, fully sequenced, Submitted on the opposite strand 781/792
(98 %)
16 diff
(98.0 %id)
TI_652739981   .ve 458 to 772 376 to 62   tiling clone, fully sequenced, Submitted on the opposite strand 315/376
(83 %)
0 diff
(100 %id)
DA328359 hippocampus .vf 1 to 527 2 to 529   tiling clone, capped   528/528
(100 %)
1 diff
(99.9 %id)
DT220252 brain .vf 20 to 244 1 to 225       225/225
(100 %)
0 diff
(100 %id)
BP193933 brain .vf 21 to 602 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DB467439 hippocampus .vf 28 to 504 1 to 477       477/477
(100 %)
4 diff
(99.2 %id)
DB727900 hippocampus .vf 28 to 734 1 to 707 G170X L172X N174H P179S R192P ... tiling clone,   707/707
(100 %)
12 diff
(98.4 %id)
DA523464 brain .vf 32 to 592 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA501792 brain .vf 65 to 596 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA146589 amygdala .vf 67 to 613 8 to 554   capped   547/547
(100 %)
3 diff
(99.5 %id)
BP229389 brain .vf 69 to 651 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP229771 brain .vf 69 to 651 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP344714 synovial membrane .vf 69 to 649 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BP348535 brain .vf 69 to 493 1 to 425       425/436
(97 %)
1 diff
(99.8 %id)
DA156887 amygdala .vf 70 to 634 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA309517 hippocampus .vf 70 to 520 2 to 453   capped   452/453
(99 %)
4 diff
(99.2 %id)
DA681103 ovary .vf 70 to 630 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
BP230803 brain .vf 74 to 655 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA966418 stomach .vf 93 to 654 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
BP230395 brain .vf 98 to 678 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
DA487229 brain .vf 103 to 685 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DA529721 brain .vf 103 to 718 2 to 617   tiling clone, capped   616/616
(100 %)
0 diff
(100 %id)
BF309122 muscle, rhabdomyosarcoma .vg 1 to 719 1 to 716 L82W G83A N84T S85L S86L ... tiling clone,   718/935
(76 %)
14 diff
(98.6 %id)
BG773334 testis .vh 1 to 637 1 to 637 F66L N106K P177A T179S F182Y tiling clone,   637/637
(100 %)
10 diff
(98.5 %id)
DC397753 testis .vh 6 to 587 1 to 584   tiling clone,   584/584
(100 %)
2 diff
(99.7 %id)
DC398249 testis .vh 6 to 562 1 to 558   tiling clone,   558/558
(100 %)
1 diff
(99.9 %id)
CA393351 eye, RPE/choroid .vi 1 to 536 1 to 536   tiling clone,   536/536
(100 %)
4 diff
(99.3 %id)
AU135098 placenta .vi 133 to 621 2 to 490   capped   489/493
(99 %)
6 diff
(98.8 %id)
DC351965 brain .vi 187 to 755 1 to 570       570/571
(99 %)
1 diff
(99.9 %id)
DC375316 brain .vi 214 to 798 1 to 585       585/585
(100 %)
0 diff
(100 %id)
BP234628 coronary artery .vi 311 to 888 1 to 579 R155S S156* tiling clone,   579/585
(98 %)
2 diff
(99.7 %id)
BP293388 lung .vj 1 to 581 1 to 581   tiling clone,   581/581
(100 %)
0 diff
(100 %id)
DC350538 brain .vj 12 to 583 1 to 571       571/571
(100 %)
3 diff
(99.5 %id)
DC375754 brain .vj 12 to 594 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
DC376319 brain .vj 12 to 548 1 to 537       537/537
(100 %)
1 diff
(99.9 %id)
DC358537 lung .vj 36 to 576 1 to 541       541/541
(100 %)
0 diff
(100 %id)
CN404348 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .vj 39 to 668 1 to 630 exact tiling clone,   630/630
(100 %)
0 diff
(100 %id)
DC354812   .vj 99 to 650 1 to 552       552/552
(100 %)
0 diff
(100 %id)
DC398422 testis .vk 1 to 568 1 to 568   tiling clone,   568/568
(100 %)
0 diff
(100 %id)
AA626251   .vk 409 to 873 464 to 2   tiling clone,   466/464
(100 %)
4 diff
(99.2 %id)
BQ893877 dorsal root ganglia .vk 820 to 1551 1 to 736   tiling clone,   736/898
(81 %)
9 diff
(99.0 %id)
DC337265 substantia nigra .vl 1 to 550 1 to 550 exact tiling clone,   550/550
(100 %)
0 diff
(100 %id)
DC326149 caudate nucleus .vm 1 to 561 1 to 561 S156R tiling clone,   561/561
(100 %)
1 diff
(99.9 %id)
DB443719 testis .vn 1 to 617 1 to 617 A2V A35P S144X P155X tiling clone,   617/698
(88 %)
5 diff
(99.3 %id)
DA531876 brain .vo 1 to 600 2 to 601 G72R tiling clone, capped   600/600
(100 %)
1 diff
(99.9 %id)
BP214032 cerebrum .vp 1 to 580 1 to 580 exact tiling clone,   580/580
(100 %)
0 diff
(100 %id)
AA394023.
matches multiple genes
  .vq 1 to 463 1 to 458 A88P V89S I90S L91S S92V ... tiling clone, also hits gene ABTB1 457/458
(99 %)
11 diff
(97.6 %id)
BP230382 brain .vr 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
0 diff
(100 %id)
DC350393 brain .vr 5 to 583 1 to 579 exact tiling clone,   579/579
(100 %)
0 diff
(100 %id)
BP310467 brain .vs 1 to 581 5 to 587   tiling clone,   587/587
(100 %)
4 diff
(99.4 %id)
DC350124 brain .vs 3 to 565 10 to 573   tiling clone,   564/564
(100 %)
2 diff
(99.7 %id)
CB155670 brain .vs 5 to 690 1 to 686 exact tiling clone,   686/686
(100 %)
1 diff
(99.9 %id)
DC351240 brain .vs 5 to 562 1 to 558       558/558
(100 %)
3 diff
(99.5 %id)
DC349638 brain .vs 53 to 576 1 to 524       524/524
(100 %)
1 diff
(99.9 %id)
DC350353 brain .vs 55 to 622 1 to 568       568/568
(100 %)
0 diff
(100 %id)
BP310219 brain .vs 63 to 641 1 to 582       582/582
(100 %)
6 diff
(99.0 %id)
DC350066 brain .vs 82 to 648 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
DC418078 trachea .vt 1 to 606 1 to 606 exact tiling clone,   606/606
(100 %)
1 diff
(99.9 %id)
DC353570 brain .vu 1 to 597 1 to 597   tiling clone,   597/597
(100 %)
1 diff
(99.9 %id)
DC330233 hippocampus .vu 52 to 635 1 to 584 exact tiling clone,   584/584
(100 %)
0 diff
(100 %id)
DC358599 lung .vv 1 to 588 1 to 588 exact tiling clone,   588/588
(100 %)
0 diff
(100 %id)
DC385190   .vv 19 to 576 1 to 558 exact     558/558
(100 %)
0 diff
(100 %id)
DC386342   .vv 99 to 649 8 to 559 T114X L115P G116W A117S P118S ... tiling clone,   552/556
(99 %)
2 diff
(99.7 %id)
BP348534 brain .vw 1 to 583 1 to 583 exact tiling clone,   583/583
(100 %)
0 diff
(100 %id)
BP348565 brain .vw 1 to 583 1 to 583 exact     583/583
(100 %)
2 diff
(99.7 %id)
BP349496 brain .vw 1 to 582 1 to 582 I89V     582/582
(100 %)
1 diff
(99.9 %id)
DB055535 testis .vx 1 to 584 2 to 587 exact tiling clone, capped   586/586
(100 %)
3 diff
(99.5 %id)
BG546663 lung .vy-u 1 to 711 1 to 717 L5W L10W G16W C18M K19Q ... tiling clone,   717/721
(99 %)
42 diff
(94.2 %id)
BQ027988 mixed .vy-u 436 to 1070 654 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 636/636
(100 %)
3 diff
(99.6 %id)
AI673020 thymus, pooled .vy-u 659 to 1070 414 to 1   tiling clone,   414/415
(99 %)
4 diff
(99.1 %id)
FN104194 breast carcinoma .vy-u 796 to 898 108 to 10     Submitted on the opposite strand 99/108
(91 %)
0 diff
(100 %id)
BM787123 stomach .vz 1 to 597 1 to 597 exact tiling clone,   597/597
(100 %)
0 diff
(100 %id)
DB354708 whole embryo, mainly head .wa-u 1 to 551 550 to 1 exact tiling clone,   550/550
(100 %)
5 diff
(99.1 %id)
FN143957 breast carcinoma .wa-u 43 to 145 1 to 103   tiling clone,   103/103
(100 %)
0 diff
(100 %id)
BI054537 placenta_normal .wb-u 1 to 341 1 to 342 S2P E3D T5R I6S I7L ... tiling clone,   342/342
(100 %)
16 diff
(95.4 %id)
BG993333 head_neck Gene TCF4, variant not shown              
Z44127 brain, total brain Gene TCF4, variant not shown              
CD236756 Pituitary Gene TCF4, variant not shown              
FN059243 breast carcinoma Gene TCF4, variant not shown         Submitted on the opposite strand    
DB319341 lung Gene TCF4, variant not shown              
DA584258 lung Gene TCF4, variant not shown       capped      
BG572262 placenta Gene TCF4, variant not shown              
BM833807 stomach Gene TCF4, variant not shown              
98 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve, .vf, .vg, .vh, .vi, .vj, .vk, .vl, .vm, .vn, .vo, .vp, .vq, .vr, .vs, .vt, .vu, .vv, .vw, .vx, .vy-u, .vz, .wa-u, .wb-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI