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Gene TCF19TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
295 supporting clones for gene TCF19 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA736280   .a 1 to 610 2 to 611   tiling clone, capped   610/610
(100 %)
3 diff
(99.6 %id)
AU153385   .a 2359 to 2916 564 to 1   tiling clone,   564/565
(99 %)
12 diff
(97.9 %id)
DA485961 brain .b 1 to 538 2 to 539   tiling clone, capped   538/538
(100 %)
4 diff
(99.3 %id)
NM_007109.2   .b 2 to 3307 1 to 3306 exact RefSeq,   3306/3306
(100 %)
0 diff
(100 %id)
AW408164 lymph .b 11 to 519 1 to 509       509/509
(100 %)
7 diff
(98.7 %id)
DA115077 cerebellum .b 15 to 577 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DB073861 testis .b 15 to 549 2 to 536   capped   535/535
(100 %)
2 diff
(99.7 %id)
DB073867 testis .b 15 to 555 2 to 542   capped   541/541
(100 %)
2 diff
(99.7 %id)
DA905259   .b 16 to 576 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DB144950 thymus .b 16 to 553 2 to 540   capped   539/539
(100 %)
3 diff
(99.5 %id)
TI_154147560   .b 18 to 766 80 to 824       745/816
(91 %)
32 diff
(96.1 %id)
CA392148 eye, RPE/choroid .b 19 to 380 1 to 362       362/362
(100 %)
1 diff
(99.8 %id)
DA190012 amygdala .b 22 to 607 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
DA854258 placenta .b 22 to 616 2 to 596   capped   595/595
(100 %)
2 diff
(99.7 %id)
CN334464 embryonic stem cells, cell lines H1, H7, andH9 .b 28 to 742 1 to 715       715/715
(100 %)
2 diff
(99.8 %id)
TI_57232920   .b 28 to 653 25 to 648       624/648
(96 %)
8 diff
(98.8 %id)
BM172368 melanotic melanoma, high MDR (cell line), skin .b 29 to 232 8 to 211       204/211
(96 %)
11 diff
(94.8 %id)
BG761044 melanotic melanoma, high MDR (cell line), skin .b 30 to 729 1 to 703       703/703
(100 %)
10 diff
(98.6 %id)
BG761953 melanotic melanoma, high MDR (cell line), skin .b 30 to 738 1 to 719       719/719
(100 %)
27 diff
(96.3 %id)
BC044632 Skin, melanotic melanoma, high MDR. .b 31 to 2870 1 to 2840 M211V tiling clone, available from MGC, AAA   2840/2840
(100 %)
6 diff
(99.8 %id)
BI906548 leukocyte .b 33 to 653 1 to 619       619/619
(100 %)
3 diff
(99.6 %id)
BQ927604 carcinoma, cell line, Prostate .b 35 to 895 1 to 864       864/939
(92 %)
18 diff
(98.1 %id)
AL544292 placenta, Placenta Cot 25-normalized .b 45 to 983 1 to 988       857/1006
(85 %)
47 diff
(95.4 %id)
BX385397   .b 52 to 1007 1 to 939       939/940
(99 %)
48 diff
(94.9 %id)
DB260358 uterus .b 65 to 626 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
BX362730   .b 70 to 1007 1 to 940       940/940
(100 %)
18 diff
(98.1 %id)
BI257277 cervical carcinoma cell line, cervix .b 73 to 607 1 to 544       544/1155
(47 %)
20 diff
(98.3 %id)
BQ425088 eye, retinoblastoma .b 73 to 923 1 to 860       860/860
(100 %)
28 diff
(96.8 %id)
AL559953 B cells (Ramos cell line), B cells from Burkitt lymphoma .b 74 to 1112 1 to 1024       1024/1028
(99 %)
16 diff
(98.5 %id)
DA476191   .b 74 to 636 2 to 564   capped   563/563
(100 %)
4 diff
(99.3 %id)
DA633986 Kidney .b 77 to 660 2 to 585   tiling clone, capped   584/584
(100 %)
0 diff
(100 %id)
AL545464 placenta, Placenta Cot 25-normalized .b 83 to 855 1 to 772       772/772
(100 %)
4 diff
(99.5 %id)
BG420158 Kidney, renal cell adenocarcinoma .b 84 to 768 1 to 685       685/862
(79 %)
12 diff
(98.7 %id)
BM834535 stomach .b 85 to 708 1 to 624       624/624
(100 %)
2 diff
(99.7 %id)
DA500240 brain .b 86 to 653 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA967805 stomach .b 88 to 643 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DB144573 thymus .b 89 to 621 2 to 534   capped   533/533
(100 %)
3 diff
(99.5 %id)
DA375311 thalamus .b 91 to 641 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DA050899   .b 93 to 667 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA433623 tongue, tumor tissue .b 93 to 646 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DA493510 brain .b 93 to 663 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DA680049   .b 93 to 611 2 to 520   capped   519/524
(99 %)
3 diff
(99.5 %id)
DA868992 Prostate .b 93 to 619 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
DA871266 Prostate .b 93 to 618 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
DA902976   .b 93 to 648 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DB120777 thymus .b 93 to 654 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DB139465 thymus .b 93 to 637 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
DB018810 esophageal, tumor tissue .b 94 to 590 2 to 498   capped   497/497
(100 %)
0 diff
(100 %id)
DB019264 esophageal, tumor tissue .b 94 to 668 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA384742 thalamus .b 96 to 686 2 to 592   capped   591/591
(100 %)
2 diff
(99.7 %id)
AW247791 lung, small cell carcinoma .b 99 to 690 9 to 600     Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 592/600
(98 %)
8 diff
(98.7 %id)
DA680197   .b 102 to 660 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
S53374   .b 395 to 2874 1 to 2479 Q123N S193T M211V G288A E290T ...     2479/2481
(99 %)
26 diff
(99.0 %id)
BX330985   .b 1936 to 2866 927 to 1       927/927
(100 %)
16 diff
(98.3 %id)
AW248066 lung, small cell carcinoma .b 1958 to 2275 328 to 11   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 318/318
(100 %)
2 diff
(99.4 %id)
AL581476 B cells (Ramos cell line), B cells from Burkitt lymphoma .b 2203 to 3289 1078 to 1   tiling clone,   1078/1121
(96 %)
23 diff
(98.0 %id)
AL570476 placenta, Placenta Cot 25-normalized .b 2256 to 2786 563 to 30       534/877
(60 %)
0 diff
(100 %id)
AL571175 placenta, Placenta Cot 25-normalized .b 2455 to 3277 825 to 1       825/825
(100 %)
17 diff
(98.0 %id)
CA392147 eye, RPE/choroid .b 2797 to 3306 527 to 17   tiling clone, AAA   511/511
(100 %)
4 diff
(99.3 %id)
DB232318 trachea .c 1 to 592 2 to 593   tiling clone, capped   592/592
(100 %)
3 diff
(99.5 %id)
DA116232 cerebellum .c 186 to 783 2 to 599   capped   598/598
(100 %)
1 diff
(99.9 %id)
NM_001077511.1   .c 187 to 3246 1 to 3060 exact RefSeq,   3060/3060
(100 %)
0 diff
(100 %id)
DA938194 Spleen .c 188 to 724 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DB153548 thymus .c 200 to 724 36 to 560   capped   525/559
(93 %)
8 diff
(98.6 %id)
DA644285   .c 201 to 778 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
AL701351 human skeletal muscle .c 207 to 645 1 to 439       439/439
(100 %)
1 diff
(99.8 %id)
BE737859 brain, glioblastoma .c 228 to 848 1 to 607       607/652
(93 %)
16 diff
(97.6 %id)
DA817052   .c 233 to 772 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
BE279605 choriocarcinoma, placenta .c 239 to 940 1 to 702       702/715
(98 %)
19 diff
(97.4 %id)
DN997971 breast cancer, Mammary gland (cancer tissue) .c 243 to 849 8 to 614       607/614
(98 %)
7 diff
(98.9 %id)
AL522303 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 255 to 987 1 to 732       732/732
(100 %)
5 diff
(99.4 %id)
DA005664   .c 256 to 835 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
AA356257   .c 258 to 617 1 to 367       367/367
(100 %)
10 diff
(97.3 %id)
AW403626 lymph .c 258 to 792 8 to 543       536/543
(98 %)
9 diff
(98.4 %id)
BI767605 pooled lung and spleen .c 258 to 1118 1 to 857       857/859
(99 %)
13 diff
(98.5 %id)
TI_57183834   .c 258 to 1118 35 to 891       857/893
(95 %)
19 diff
(97.9 %id)
TI_154140322   .c 258 to 980 80 to 803       724/724
(100 %)
25 diff
(96.6 %id)
DA519812 brain .c 262 to 815 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DA493448 brain .c 264 to 808 2 to 546   capped   545/545
(100 %)
3 diff
(99.5 %id)
DA022822   .c 271 to 842 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BF206955 brain, neuroblastoma .c 272 to 922 1 to 661       661/907
(72 %)
46 diff
(95.0 %id)
AK315258 bladder .c 273 to 1792 1 to 1520 M211V     1520/1520
(100 %)
6 diff
(99.7 %id)
DA014896 adrenal gland .c 274 to 840 2 to 568   capped   567/573
(98 %)
4 diff
(99.4 %id)
DA043873 bladder .c 274 to 772 2 to 500   capped   499/499
(100 %)
2 diff
(99.6 %id)
BG469797 adenocarcinoma cell line, colon .c 276 to 785 1 to 519       519/901
(57 %)
18 diff
(98.1 %id)
BM838886 Ascites, stomach .c 277 to 737 1 to 461       461/461
(100 %)
1 diff
(99.8 %id)
DA023659   .c 278 to 845 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA026318   .c 278 to 845 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA051260   .c 278 to 846 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA051981   .c 278 to 853 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA473265   .c 278 to 822 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
DA549052   .c 278 to 838 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA647848   .c 278 to 828 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA648577   .c 278 to 825 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA652255   .c 278 to 836 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA655111   .c 278 to 845 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA818571   .c 278 to 849 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA880515   .c 278 to 1021 2 to 746   tiling clone, capped   745/755
(98 %)
2 diff
(99.8 %id)
DA905393   .c 278 to 827 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DA925507 small intestine .c 278 to 855 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB198614 trachea .c 278 to 816 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
DB242702 stomach, tumor tissue .c 278 to 816 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB245256 uterus, tumor tissue .c 278 to 824 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DB265782 uterus .c 278 to 853 2 to 578   capped   577/577
(100 %)
3 diff
(99.5 %id)
DA472312   .c 279 to 816 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA476977   .c 279 to 849 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA596152   .c 279 to 816 2 to 539   capped   538/538
(100 %)
3 diff
(99.5 %id)
DA665903   .c 279 to 820 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
CN420214 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 280 to 815 1 to 536       536/536
(100 %)
3 diff
(99.5 %id)
DA457225 tongue, tumor tissue .c 280 to 839 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA875509 Prostate .c 280 to 845 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
BC033086 Brain, neuroblastoma .c 290 to 3245 1 to 2957 M211V P241L tiling clone, available from MGC, AAA   2957/2957
(100 %)
13 diff
(99.6 %id)
BE263267 brain, neuroblastoma .c 309 to 801 1 to 493       493/493
(100 %)
4 diff
(99.2 %id)
TI_159707481   .c 364 to 1268 958 to 58       901/1130
(79 %)
16 diff
(98.6 %id)
BF878487 lung_tumor .c 388 to 838 1 to 455       455/455
(100 %)
16 diff
(96.5 %id)
BE792603 lung, small cell carcinoma .c 410 to 1211 1 to 793       793/810
(97 %)
18 diff
(97.8 %id)
DA596951   .c 443 to 980 2 to 540   capped   537/539
(99 %)
3 diff
(99.5 %id)
DA051477   .c 515 to 1069 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BM152990 leukopheresis .c 519 to 1054 1 to 536       536/536
(100 %)
3 diff
(99.5 %id)
BC002493 Colon, adenocarcinoma .c 531 to 2809 1 to 2279 M211V P241L available from MGC, AAA   2279/2279
(100 %)
7 diff
(99.7 %id)
BE293212 adenocarcinoma cell line, colon .c 550 to 1181 1 to 630       630/686
(91 %)
15 diff
(97.9 %id)
DN996475 breast cancer, Mammary gland (cancer tissue) .c 565 to 1274 8 to 717       710/717
(99 %)
11 diff
(98.5 %id)
BI261692 lymph, lymphoma, cell line .c 602 to 1251 1 to 651       651/704
(92 %)
13 diff
(98.2 %id)
BQ057198 lymph, lymphoma, cell line .c 604 to 1374 1 to 778       778/959
(81 %)
19 diff
(98.1 %id)
BQ642081 lymph, lymphoma, cell line .c 604 to 1143 1 to 540       540/901
(59 %)
3 diff
(99.7 %id)
BQ424185 eye, retinoblastoma .c 622 to 1319 1 to 705       705/955
(73 %)
24 diff
(97.5 %id)
DA752609   .c 631 to 1158 2 to 530   capped   529/529
(100 %)
2 diff
(99.7 %id)
BM832678 stomach .c 664 to 1123 1 to 460       460/460
(100 %)
1 diff
(99.8 %id)
BM834738 stomach .c 664 to 1049 1 to 386       386/386
(100 %)
1 diff
(99.8 %id)
TI_1948122137   .c 710 to 1507 131 to 929   fully sequenced, AAA   799/929
(86 %)
13 diff
(98.7 %id)
TI_1948122490   .c 710 to 1633 130 to 1050       921/1388
(66 %)
38 diff
(97.3 %id)
BT007247   .c 711 to 1747 1 to 1037       1037/1038
(99 %)
4 diff
(99.7 %id)
CV028297 mixed .c 711 to 1281 1 to 571       571/571
(100 %)
0 diff
(100 %id)
BQ326774 colon_normal .c 718 to 938 224 to 2       223/224
(99 %)
0 diff
(100 %id)
BM044206 carcinoma, cell line, Prostate .c 792 to 1619 1 to 832       832/832
(100 %)
19 diff
(97.8 %id)
BU152599 carcinoma, cell line, Prostate .c 794 to 1511 1 to 728       728/877
(83 %)
3 diff
(99.7 %id)
BU542933 carcinoma, cell line, Prostate .c 794 to 1578 1 to 793       793/823
(96 %)
14 diff
(98.3 %id)
TI_1948122311   .c 812 to 1747 1074 to 126       949/1203
(78 %)
30 diff
(97.6 %id)
DA644344   .c 828 to 1392 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BM557880 duodenal adenocarcinoma, cell line, small intestine .c 835 to 1511 1 to 677       677/1023
(66 %)
12 diff
(98.9 %id)
TI_1948122660   .c 864 to 1747 1019 to 126       894/1224
(73 %)
30 diff
(97.6 %id)
BM917428 blood, natural killer cells, cell line .c 916 to 1578 1 to 669       669/1152
(58 %)
13 diff
(98.9 %id)
BP432224   .c 920 to 1309 1 to 393       393/393
(100 %)
7 diff
(98.3 %id)
BP365938 lung .c 952 to 1532 1 to 581   tiling clone,   581/581
(100 %)
0 diff
(100 %id)
BP352094   .c 961 to 1540 1 to 582       582/582
(100 %)
8 diff
(98.7 %id)
W07729 lung .c 1005 to 1529 1 to 522       522/522
(100 %)
19 diff
(96.4 %id)
BE620988 epithelioid carcinoma, Pancreas .c 1226 to 1978 1 to 756       756/797
(94 %)
37 diff
(95.4 %id)
TI_1948122138   .c 1477 to 1747 405 to 127   fully sequenced,   279/405
(68 %)
0 diff
(100 %id)
BG470689 eye, retinoblastoma .c 1495 to 2341 1 to 847       847/848
(99 %)
16 diff
(98.2 %id)
CD703591 normal nasopharynx .c 1501 to 1952 27 to 476   tiling clone,   450/476
(94 %)
6 diff
(98.8 %id)
W85962 liver and spleen .c 1506 to 1894 1 to 390       390/390
(100 %)
12 diff
(97.0 %id)
R05977 liver and spleen .c 1508 to 1602 1 to 94       94/94
(100 %)
4 diff
(95.8 %id)
R11329 liver and spleen .c 1508 to 1602 1 to 94       94/94
(100 %)
2 diff
(97.9 %id)
AW609236 stomach .c 1517 to 2097 12 to 590       579/619
(93 %)
35 diff
(94.4 %id)
EC462020 Prostate .c 1553 to 1646 1 to 94       94/94
(100 %)
2 diff
(97.9 %id)
BF970699 adrenal cortex carcinoma, cell line, adrenal gland .c 1578 to 2363 1 to 774       774/920
(84 %)
21 diff
(97.8 %id)
CR735498 hepatocellular carcinoma, cell line, Liver .c 1653 to 2154 38 to 539       502/539
(93 %)
6 diff
(98.9 %id)
BM927918 hepatocellular carcinoma, cell line, Liver .c 1654 to 2645 1 to 988   tiling clone,   988/989
(99 %)
20 diff
(98.0 %id)
BP431719   .c 1665 to 2068 1 to 404       404/404
(100 %)
2 diff
(99.6 %id)
BE940635 uterus_tumor .c 1780 to 2282 503 to 2       502/503
(99 %)
0 diff
(100 %id)
BP432136   .c 1789 to 2158 1 to 370       370/370
(100 %)
0 diff
(100 %id)
BE940624 uterus_tumor .c 1792 to 2290 529 to 27       503/529
(95 %)
0 diff
(100 %id)
BE940634 uterus_tumor .c 1792 to 2184 411 to 20       392/411
(95 %)
0 diff
(100 %id)
BE940637 uterus_tumor .c 1792 to 2267 475 to 1       475/475
(100 %)
3 diff
(99.4 %id)
N80679 lung .c 1807 to 2227 423 to 1       423/428
(98 %)
9 diff
(97.9 %id)
T79390 liver and spleen .c 1909 to 2284 1 to 379       379/380
(99 %)
7 diff
(98.2 %id)
BE621799 epithelioid carcinoma, Pancreas .c 1931 to 2795 905 to 29       877/1060
(82 %)
0 diff
(100 %id)
BE738463 brain, glioblastoma .c 1947 to 2743 823 to 28       796/975
(81 %)
28 diff
(97.2 %id)
BM929477 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1971 to 2477 1 to 505   fully sequenced,   505/505
(100 %)
0 diff
(100 %id)
TI_159681432   .c 1989 to 2813 914 to 102       813/1096
(74 %)
0 diff
(100 %id)
AW799040 uterus .c 1994 to 2292 310 to 17       294/324
(90 %)
0 diff
(100 %id)
BG249623 hypernephroma, cell line, Kidney .c 2013 to 2768 28 to 793       766/889
(86 %)
49 diff
(94.5 %id)
TI_159696913   .c 2014 to 2809 871 to 85   AAA   787/985
(79 %)
21 diff
(97.9 %id)
BM792980 Ascites, stomach .c 2019 to 2569 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
H57383 liver and spleen .c 2038 to 2441 1 to 417   fully sequenced,   417/417
(100 %)
15 diff
(96.5 %id)
AA235182 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2043 to 2420 1 to 376   fully sequenced,   376/376
(100 %)
3 diff
(99.3 %id)
BF801255 colon_ins .c 2052 to 2218 175 to 9     Submitted on the opposite strand 167/175
(95 %)
0 diff
(100 %id)
BE965450 epithelioid carcinoma, Pancreas .c 2064 to 2810 790 to 22   AAA   769/806
(95 %)
68 diff
(91.6 %id)
CA432420 cell lines, Chondrosarcoma .c 2076 to 2797 734 to 19   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 716/716
(100 %)
6 diff
(99.2 %id)
BG252134 adenocarcinoma, cell line, Liver .c 2141 to 2810 1 to 667   AAA   667/667
(100 %)
5 diff
(99.3 %id)
BG959308 colon .c 2183 to 2441 264 to 8       257/266
(96 %)
0 diff
(100 %id)
AA055180 heart .c 2217 to 2447 1 to 244   fully sequenced,   244/244
(100 %)
1 diff
(99.6 %id)
BF091609 testis_normal .c 2272 to 2690 453 to 36       418/453
(92 %)
0 diff
(100 %id)
BM150699 leukopheresis .c 2281 to 2795 533 to 19   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 515/517
(99 %)
0 diff
(100 %id)
AA648998 germinal center B cell .c 2323 to 2666 344 to 1       344/344
(100 %)
0 diff
(100 %id)
AI922206 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 2326 to 2683 358 to 1       358/358
(100 %)
0 diff
(100 %id)
BP432914   .c 2340 to 2653 1 to 315       315/315
(100 %)
3 diff
(99.1 %id)
AI434810 Kidney .c 2343 to 2809 467 to 1       467/467
(100 %)
0 diff
(100 %id)
AI356843 brain, glioblastoma (pooled) .c 2346 to 2817 472 to 1       472/472
(100 %)
0 diff
(100 %id)
AI969932 Prostate .c 2349 to 2797 449 to 1       449/449
(100 %)
0 diff
(100 %id)
CB050918 Prostate .c 2357 to 2809 10 to 462   fully sequenced, AAA   453/462
(98 %)
6 diff
(98.8 %id)
BP432911   .c 2375 to 2682 1 to 310       310/310
(100 %)
4 diff
(98.8 %id)
W85878 liver and spleen .c 2376 to 2753 382 to 1       382/382
(100 %)
5 diff
(98.7 %id)
AI346101 adenocarcinoma, colon .c 2377 to 2815 471 to 33       439/471
(93 %)
0 diff
(100 %id)
AA569976 breast .c 2384 to 2794 414 to 1       414/414
(100 %)
3 diff
(99.3 %id)
AA235074 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2390 to 2809 420 to 1   fully sequenced,   420/420
(100 %)
0 diff
(100 %id)
AI799152 pooled .c 2396 to 2804 416 to 8       409/416
(98 %)
0 diff
(100 %id)
CB050917 Prostate .c 2396 to 2799 404 to 1   fully sequenced,   404/404
(100 %)
0 diff
(100 %id)
AI423899 brain, glioblastoma (pooled) .c 2402 to 2809 408 to 1       408/408
(100 %)
0 diff
(100 %id)
H57336 liver and spleen .c 2411 to 2816 409 to 1   fully sequenced,   409/409
(100 %)
11 diff
(97.4 %id)
AA055892 heart .c 2417 to 2809 411 to 18   fully sequenced, AAA   394/394
(100 %)
0 diff
(100 %id)
BE243187 leukopheresis .c 2418 to 2807 391 to 3       389/391
(99 %)
0 diff
(100 %id)
BF110978 carcinoid, lung .c 2419 to 2809 403 to 12   AAA   392/392
(100 %)
2 diff
(99.5 %id)
AA973173 pooled germ cell tumors .c 2424 to 2809 401 to 16   AAA   386/386
(100 %)
1 diff
(99.8 %id)
AI309549 adenocarcinoma, colon .c 2434 to 2840 414 to 8   tiling clone,   407/414
(98 %)
0 diff
(100 %id)
AI093655 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2436 to 2810 375 to 1       375/375
(100 %)
2 diff
(99.5 %id)
AI628444 Kidney .c 2446 to 2809 402 to 39   AAA   364/364
(100 %)
25 diff
(93.2 %id)
T79820 liver and spleen .c 2447 to 2811 369 to 1       369/443
(83 %)
5 diff
(98.9 %id)
BU742803 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2447 to 2809 380 to 19   fully sequenced, AAA   362/362
(100 %)
0 diff
(100 %id)
T83884 liver and spleen .c 2454 to 2775 326 to 1       326/330
(98 %)
4 diff
(98.8 %id)
AL522302 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 2457 to 3233 778 to 1       778/778
(100 %)
20 diff
(97.5 %id)
AW015662   .c 2459 to 2809 368 to 18   AAA   351/361
(97 %)
0 diff
(100 %id)
AI927521 Kidney .c 2462 to 2805 351 to 8       344/351
(98 %)
0 diff
(100 %id)
AJ713298 bone marrow .c 2482 to 2809 1 to 328   AAA   328/328
(100 %)
1 diff
(99.7 %id)
AA629956 lung, lung carcinoma .c 2490 to 2805 316 to 1       316/316
(100 %)
0 diff
(100 %id)
BF591326 colon, colon tumor, RER+ .c 2492 to 2808 317 to 1       317/317
(100 %)
0 diff
(100 %id)
CD695829 normal nasopharynx .c 2498 to 2989 22 to 513       492/513
(95 %)
6 diff
(98.9 %id)
AI422644 Prostate .c 2509 to 2768 302 to 43       260/266
(97 %)
0 diff
(100 %id)
AI765565 2 pooled tumors (clear cell type), Kidney .c 2515 to 3012 1 to 499     Submitted on the opposite strand 499/499
(100 %)
6 diff
(98.8 %id)
AI989809 pooled germ cell tumors .c 2517 to 3039 1 to 524     Submitted on the opposite strand 524/524
(100 %)
5 diff
(99.1 %id)
AI597711 Prostate .c 2518 to 2809 292 to 1       292/292
(100 %)
0 diff
(100 %id)
AI952961 pooled germ cell tumors .c 2518 to 2965 1 to 449     Submitted on the opposite strand 449/449
(100 %)
6 diff
(98.7 %id)
BE243484 leukopheresis .c 2524 to 2795 274 to 3       272/274
(99 %)
0 diff
(100 %id)
AA094406   .c 2527 to 2770 1 to 243       243/243
(100 %)
7 diff
(97.2 %id)
CA430158 Cell Line, Chondrosarcoma .c 2529 to 3245 734 to 19   tiling clone, AAA   716/716
(100 %)
3 diff
(99.6 %id)
AA769911 pooled .c 2531 to 2808 278 to 1       278/278
(100 %)
0 diff
(100 %id)
BE673170 Prostate .c 2548 to 2809 262 to 1       262/262
(100 %)
0 diff
(100 %id)
BI262231 lymph, lymphoma, cell line .c 2554 to 3193 644 to 1       644/644
(100 %)
6 diff
(99.1 %id)
BU633607 cell lines, Chondrosarcoma .c 2576 to 3245 689 to 19   AAA   671/671
(100 %)
4 diff
(99.5 %id)
BE242029 leukopheresis .c 2624 to 2807 187 to 3       185/187
(98 %)
0 diff
(100 %id)
AI268911 adenocarcinoma, colon .c 2631 to 2839 230 to 22   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 209/209
(100 %)
6 diff
(97.2 %id)
BG950632 colon .c 2661 to 2809 162 to 16       147/162
(90 %)
0 diff
(100 %id)
BE243480 leukopheresis .c 2682 to 2795 116 to 3       114/116
(98 %)
0 diff
(100 %id)
EC471634 Prostate .c 2713 to 2807 98 to 4       95/98
(96 %)
0 diff
(100 %id)
AW951012   .c 2721 to 3206 1 to 486       486/491
(98 %)
18 diff
(96.4 %id)
AA355383   .c 2732 to 3026 1 to 297       297/297
(100 %)
2 diff
(99.4 %id)
AW799651 uterus .c 2740 to 3117 14 to 392       379/394
(96 %)
9 diff
(97.8 %id)
BP393136 pancreatic islet .c 2748 to 3245 1 to 500     Submitted on the opposite strand 500/500
(100 %)
5 diff
(99.0 %id)
BF002359 colon, colon tumor, RER+ .c 2781 to 3244 465 to 1       465/465
(100 %)
8 diff
(98.3 %id)
AW015168   .c 2789 to 3245 475 to 18   AAA   458/458
(100 %)
6 diff
(98.7 %id)
BG680151 skin, squamous cell carcinoma .c 2826 to 3245 1 to 421   AAA   421/421
(100 %)
5 diff
(98.9 %id)
AI278066 placenta .c 2830 to 3245 427 to 12   AAA   416/420
(99 %)
0 diff
(100 %id)
AI291728 placenta .c 2842 to 3245 432 to 28   AAA   405/405
(100 %)
14 diff
(96.6 %id)
AI085789 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 2847 to 3245 399 to 1       399/399
(100 %)
7 diff
(98.3 %id)
CF124559 CNCAP(3)T-225 cell line, Prostate .c 2869 to 3246 45 to 422       378/423
(89 %)
1 diff
(99.8 %id)
TI_154184893   .c 2869 to 3246 114 to 491   AAA   378/928
(40 %)
1 diff
(99.9 %id)
AI023646 liver and spleen .c 2973 to 3382 410 to 1   tiling clone,   410/410
(100 %)
3 diff
(99.3 %id)
CN266905.
matches multiple genes
embryonic stem cells, cell lines H1, H7, andH9 .c 3373 to 3772 1 to 400   tiling clone, also hits gene POU5F1P3 400/400
(100 %)
16 diff
(96.0 %id)
DN604371.
matches multiple genes
  .c 3422 to 3487 1 to 66   tiling clone, also hits gene POU5F1B 66/74
(89 %)
5 diff
(93.3 %id)
CB146469 Liver .c 3525 to 3891 1 to 367   tiling clone,   367/367
(100 %)
7 diff
(98.1 %id)
DB112777 thymus .d 1 to 577 2 to 578   tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
BG192353   .d 531 to 1173 1 to 644   tiling clone,   644/794
(81 %)
8 diff
(99.0 %id)
BG203640   .d 531 to 1335 1 to 808   tiling clone,   805/808
(99 %)
13 diff
(98.4 %id)
BG218902   .d 531 to 1367 1 to 824   tiling clone,   824/865
(95 %)
30 diff
(96.6 %id)
AL531414 brain, fetal liver, Liver, neuroblastoma cells .e -10 to 1013 1 to 1012   tiling clone,   1012/1079
(93 %)
17 diff
(98.5 %id)
DB158779 thymus .e 1 to 592 2 to 594   capped   593/593
(100 %)
3 diff
(99.5 %id)
DB155431 thymus .e 4 to 493 2 to 492   capped   491/491
(100 %)
2 diff
(99.6 %id)
BQ933682 epidermoid carcinoma, cell line, lung .e 19 to 866 1 to 859       859/925
(92 %)
28 diff
(97.0 %id)
DA637164 Liver .e 25 to 567 2 to 544   capped   543/543
(100 %)
4 diff
(99.3 %id)
DA555585   .e 26 to 493 2 to 469   capped   468/468
(100 %)
2 diff
(99.6 %id)
DA033327   .e 27 to 607 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA649794   .e 31 to 560 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DA744126   .e 31 to 509 2 to 480   capped   479/479
(100 %)
4 diff
(99.2 %id)
DA924169 small intestine .e 31 to 605 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DB137612 thymus .e 31 to 577 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA539523 Kidney .e 40 to 636 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
CN334465 embryonic stem cells, cell lines H1, H7, andH9 .e 43 to 535 1 to 492       492/492
(100 %)
2 diff
(99.6 %id)
BG329118 eye, retinoblastoma .e 180 to 854 1 to 670       670/670
(100 %)
13 diff
(98.1 %id)
BG394572 eye, retinoblastoma .e 180 to 593 1 to 414       414/416
(99 %)
3 diff
(99.3 %id)
BI115646 lung, small cell carcinoma .e 647 to 1423 1 to 767 L73W E74K D75T H76T S77A ... tiling clone,   767/786
(97 %)
40 diff
(95.0 %id)
BG252844 adenocarcinoma, cell line, Liver .e 1159 to 1897 1 to 737   tiling clone,   737/934
(78 %)
18 diff
(98.1 %id)
AL564063 brain, fetal liver, Liver, neuroblastoma cells .e 1947 to 2778 826 to 1   tiling clone,   826/850
(97 %)
45 diff
(94.8 %id)
BG177522 lymph, lymphoma, cell line .f-u -8 to 729 1 to 733       733/1002
(73 %)
20 diff
(98.1 %id)
DB136764 thymus .f-u 1 to 508 2 to 510   tiling clone, capped   509/509
(100 %)
3 diff
(99.5 %id)
AK056834 Prostate .f-u 32 to 2871 1 to 2841 exact tiling clone, available from FLJ,   2841/2841
(100 %)
11 diff
(99.7 %id)
DA185589 amygdala .f-u 33 to 574 2 to 543   capped   542/542
(100 %)
3 diff
(99.5 %id)
DA865616 Prostate .f-u 33 to 573 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DA112636 cerebellum .f-u 35 to 618 2 to 589   tiling clone, capped   588/588
(100 %)
7 diff
(98.9 %id)
DA028685   .f-u 179 to 746 2 to 571   capped   570/570
(100 %)
5 diff
(99.2 %id)
DA227502 brain .f-u 219 to 773 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA227559 brain .f-u 219 to 773 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA080621 cerebellum .f-u 221 to 794 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
DB241164 trachea .f-u 223 to 813 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DB072991 testis .f-u 234 to 781 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DB286932 uterus .f-u 234 to 785 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
DA901460   .f-u 237 to 746 2 to 511   capped   510/510
(100 %)
1 diff
(99.9 %id)
DB152794 thymus .f-u 268 to 773 2 to 507   capped   506/506
(100 %)
1 diff
(99.9 %id)
H68405 liver and spleen .f-u 919 to 1328 1 to 415   tiling clone,   415/421
(98 %)
16 diff
(96.2 %id)
H68406 liver and spleen .f-u 1737 to 2061 335 to 1       335/338
(99 %)
14 diff
(95.9 %id)
DB329585 Prostate .f-u 2365 to 2871 508 to 1   tiling clone,   508/508
(100 %)
5 diff
(99.1 %id)
DA489593 brain .g 1 to 481 2 to 482 exact tiling clone, capped   481/481
(100 %)
2 diff
(99.6 %id)
DB159090 thymus .g 1 to 558 2 to 559 exact capped   558/558
(100 %)
2 diff
(99.7 %id)
DA743655   .g 15 to 540 2 to 529 exact capped   528/528
(100 %)
5 diff
(99.1 %id)
DA930848 small intestine .g 20 to 602 2 to 584 exact capped   583/586
(99 %)
2 diff
(99.7 %id)
BE778124 eye, retinoblastoma .g 41 to 687 1 to 648 exact tiling clone, AAA   648/1052
(61 %)
30 diff
(97.2 %id)
DA557628   .g 45 to 581 14 to 550 exact capped   537/537
(100 %)
2 diff
(99.7 %id)
DA480150   .g 64 to 602 2 to 540 exact capped   539/539
(100 %)
2 diff
(99.7 %id)
DA767882 brain .g 64 to 441 2 to 379 Q2H capped   378/378
(100 %)
6 diff
(98.5 %id)
DA743416   .g 69 to 367 2 to 301 L28P L29T G30R D31R C32L ... capped   300/300
(100 %)
3 diff
(99.0 %id)
DA473567   .g 75 to 623 2 to 550 exact capped   549/549
(100 %)
0 diff
(100 %id)
DA444566 tongue, tumor tissue .g 86 to 644 2 to 560 exact capped   559/559
(100 %)
2 diff
(99.7 %id)
DA661719   .g 87 to 644 2 to 559 exact tiling clone, capped   558/558
(100 %)
0 diff
(100 %id)
DA455294 tongue, tumor tissue .g 90 to 658 2 to 570 exact capped   569/569
(100 %)
4 diff
(99.3 %id)
DA651395   .g 91 to 634 2 to 545 exact capped   544/544
(100 %)
1 diff
(99.9 %id)
DA653478   .g 91 to 615 2 to 526 exact capped   525/525
(100 %)
1 diff
(99.9 %id)
DA742208   .g 91 to 645 2 to 556 exact capped   555/555
(100 %)
4 diff
(99.3 %id)
DA998054   .g 91 to 602 2 to 513 exact capped   512/512
(100 %)
2 diff
(99.7 %id)
DB159611 thymus .g 91 to 669 2 to 580 exact tiling clone, capped   579/579
(100 %)
2 diff
(99.7 %id)
DA996437   .h 1 to 528 5 to 533 exact tiling clone, capped   532/532
(100 %)
2 diff
(99.7 %id)
AW298050   .i-u 1 to 477 494 to 18 P12L M29V tiling clone, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 477/477
(100 %)
3 diff
(99.4 %id)
BG194808   Gene TCF19, variant not shown         This clone was ignored    
BX647174 human small intestine Gene TCF19, variant not shown       available from DKFZ, AAA Suspected internal deletion, suspected internal deletion, this clone was ignored    
DA479146   Gene TCF19, variant not shown       capped Suspected internal deletion, this clone was ignored    
BG122416 adenocarcinoma, cell line, Liver Gene TCF19, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BI117589 lung, small cell carcinoma Gene TCF19, variant not shown         Suspected internal deletion, this clone was ignored    
AU252526 neuroblastoma Gene TCF19, variant not shown         Suspected internal deletion, this clone was ignored    
DB104662 thymus Gene TCF19, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI