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Gene TCEA1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
297 supporting clones for gene TCEA1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_154146214   .a 1 to 531 103 to 635   tiling clone,   533/838
(63 %)
11 diff
(98.7 %id)
TI_154147269   .a 1 to 587 81 to 666   tiling clone,   586/633
(92 %)
17 diff
(97.4 %id)
AI990299 pooled germ cell tumors .a 460 to 1248 787 to 1   tiling clone,   787/787
(100 %)
27 diff
(96.6 %id)
NM_006756.2   .b 1 to 2783 2 to 2784 exact RefSeq,   2784/2784
(100 %)
4 diff
(99.9 %id)
CN347407 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 2 to 769 1 to 769   tiling clone,   769/769
(100 %)
2 diff
(99.8 %id)
DA660881   .b 22 to 591 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA819100   .b 22 to 575 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
CN347412 embryonic stem cells, cell lines H1, H7, andH9 .b 31 to 742 12 to 723       712/723
(98 %)
6 diff
(99.2 %id)
CX754922 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 33 to 787 1 to 745       745/842
(88 %)
11 diff
(98.7 %id)
BM477937 lymph, lymphoma, cell line .b 37 to 789 1 to 764       764/1003
(76 %)
18 diff
(98.3 %id)
CN347408 embryonic stem cells, cell lines H1, H7, andH9 .b 42 to 567 1 to 526       526/526
(100 %)
0 diff
(100 %id)
DA596567   .b 78 to 591 2 to 515   capped   514/514
(100 %)
0 diff
(100 %id)
CN347415 embryonic stem cells, DMSO-treated H9 cellline .b 93 to 588 1 to 496   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 496/502
(98 %)
1 diff
(99.9 %id)
DA024068   .b 133 to 689 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB198151 trachea .b 133 to 723 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
BM455435 lymph, lymphoma, cell line .b 135 to 1128 1 to 1000   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1000/1015
(98 %)
17 diff
(98.4 %id)
DA578294   .b 136 to 678 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DB495466 hypothalamus .b 138 to 649 1 to 510       510/510
(100 %)
3 diff
(99.5 %id)
DA752732   .b 138 to 647 2 to 511   capped   510/510
(100 %)
0 diff
(100 %id)
DA162089 amygdala .b 139 to 647 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
AU117185 whole embryo, mainly head .b 139 to 979 2 to 841   capped   840/840
(100 %)
15 diff
(98.3 %id)
DA903615   .b 139 to 694 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB202188 trachea .b 139 to 710 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
TI_57215929   .b 140 to 823 30 to 711       682/711
(95 %)
9 diff
(98.8 %id)
AL549114 placenta, Placenta Cot 25-normalized .b 142 to 1123 1 to 982       982/982
(100 %)
9 diff
(99.1 %id)
DB503229 hypothalamus .b 143 to 624 1 to 482       482/482
(100 %)
0 diff
(100 %id)
CB988850 Human Placenta, placenta .b 143 to 888 28 to 778       751/813
(92 %)
16 diff
(98.1 %id)
CF994002 Human Placenta, placenta .b 143 to 930 28 to 828       801/842
(95 %)
26 diff
(97.0 %id)
DA032689   .b 144 to 728 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
TI_154147363   .b 146 to 552 82 to 492       411/422
(97 %)
22 diff
(94.8 %id)
M81601   .b 149 to 2776 1 to 2627 V127L     2627/2634
(99 %)
8 diff
(99.7 %id)
AL702886 human skeletal muscle .b 160 to 912 1 to 753       753/753
(100 %)
1 diff
(99.9 %id)
DB500204 hypothalamus .b 161 to 642 1 to 482       482/483
(99 %)
3 diff
(99.4 %id)
BX427766 fetal liver, Liver .b 163 to 997 1 to 836       836/839
(99 %)
6 diff
(99.3 %id)
BQ948962 leiomyosarcoma, uterus .b 163 to 996 6 to 848       843/1097
(76 %)
37 diff
(96.7 %id)
AL701922 human skeletal muscle .b 164 to 561 1 to 398       398/398
(100 %)
0 diff
(100 %id)
DB492068 hypothalamus .b 167 to 585 1 to 419       419/420
(99 %)
1 diff
(99.8 %id)
AL550329 placenta, Placenta Cot 25-normalized .b 172 to 1139 1 to 966       966/966
(100 %)
10 diff
(99.0 %id)
BU156723 leiomyosarcoma, uterus .b 178 to 1064 1 to 893       893/895
(99 %)
9 diff
(99.0 %id)
BQ894118 dorsal root ganglia .b 179 to 955 1 to 784   AAA   782/884
(88 %)
19 diff
(97.9 %id)
DA028085   .b 180 to 745 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA273704 corpus callosum .b 180 to 743 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA022594   .b 184 to 755 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA130600 alzheimer cortex .b 184 to 747 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA471843   .b 184 to 745 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA770731 brain .b 184 to 764 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB175640 kidney, tumor tissue .b 184 to 730 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA391227 thalamus .b 186 to 760 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA523065 brain .b 186 to 753 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB014680 esophageal, tumor tissue .b 186 to 773 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
AK026617   .b 189 to 1944 1 to 1756 K143R available from FLJ, AAA   1756/1756
(100 %)
3 diff
(99.9 %id)
BQ225711.
matches multiple genes
large cell carcinoma, lung .b 189 to 989 1 to 807     also hits gene TCEA1P2 807/927
(87 %)
25 diff
(97.4 %id)
DA392753 thalamus .b 190 to 778 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
CD644119.
matches multiple genes
Embryonic Stem cells .b 193 to 1000 4 to 803     also hits gene TCEA1P2 800/803
(99 %)
22 diff
(97.3 %id)
CV571194 cornea, eye .b 195 to 802 1 to 608       608/608
(100 %)
0 diff
(100 %id)
BQ642072 lymph, lymphoma, cell line .b 196 to 995 1 to 807       807/923
(87 %)
18 diff
(98.1 %id)
BQ898965 lymph, lymphoma, cell line .b 196 to 1004 1 to 816       816/868
(94 %)
13 diff
(98.6 %id)
BC072460 Uterus, leiomyosarcoma .b 197 to 2769 1 to 2574 exact tiling clone, available from MGC, AAA   2574/2574
(100 %)
3 diff
(99.9 %id)
BI254662.
matches multiple genes
cervical carcinoma cell line, cervix .b 197 to 980 1 to 786     also hits gene TCEA1P2 786/790
(99 %)
25 diff
(96.9 %id)
BQ959233 leiomyosarcoma, uterus .b 198 to 1099 1 to 904       904/905
(99 %)
3 diff
(99.7 %id)
CD515156 White Matter .b 198 to 1038 1 to 846       844/906
(93 %)
7 diff
(99.3 %id)
BX416235.
matches multiple genes
neuroblastoma .b 202 to 1090 1 to 882     also hits gene TCEA1P2 882/930
(94 %)
13 diff
(98.7 %id)
X62585 Kidney .b 219 to 2776 1 to 2557 exact tiling clone,   2557/2563
(99 %)
2 diff
(100.0 %id)
BE886806 leiomyosarcoma, uterus .b 224 to 887 1 to 664       664/669
(99 %)
7 diff
(99.0 %id)
CR998448 T-Lymphocytes .b 226 to 1149 1 to 924       924/924
(100 %)
0 diff
(100 %id)
BM803914 leiomyosarcoma, uterus .b 228 to 1149 1 to 927       927/1071
(86 %)
23 diff
(97.9 %id)
TI_154148730.
matches multiple genes
  .b 229 to 737 80 to 588     also hits gene TCEA1P2 509/509
(100 %)
2 diff
(99.7 %id)
AW407206 lymph .b 233 to 615 7 to 389       383/389
(98 %)
0 diff
(100 %id)
TI_154145084   .b 233 to 685 79 to 531   AAA   453/624
(72 %)
6 diff
(99.1 %id)
BG724399.
matches multiple genes
testis .b 261 to 1003 1 to 743   tiling clone, also hits gene TCEA1P2 743/743
(100 %)
5 diff
(99.4 %id)
DA492714 brain .b 267 to 842 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB453931.
matches multiple genes
testis .b 303 to 796 1 to 494     also hits gene TCEA1P2 494/494
(100 %)
2 diff
(99.6 %id)
AK290454 brain .b 305 to 1367 1 to 1063 exact     1063/1063
(100 %)
0 diff
(100 %id)
BG258151 embryonal carcinoma, cell line, testis .b 311 to 1004 1 to 694       694/934
(74 %)
11 diff
(98.9 %id)
BT019995   .b 323 to 1226 1 to 904       904/906
(99 %)
0 diff
(100 %id)
CR542221   .b 323 to 1225 1 to 903       903/903
(100 %)
1 diff
(99.9 %id)
CN337917 embryonic stem cells, DMSO-treated H9 cellline .b 328 to 983 1 to 655       655/655
(100 %)
1 diff
(99.9 %id)
CN337909 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 413 to 1058 1 to 646       646/646
(100 %)
0 diff
(100 %id)
AA306306   .b 427 to 802 1 to 376       376/376
(100 %)
0 diff
(100 %id)
DN919095   .b 437 to 754 1 to 318       318/318
(100 %)
0 diff
(100 %id)
CR999597 T-Lymphocytes .b 443 to 1371 1 to 926       926/930
(99 %)
5 diff
(99.5 %id)
AL550490 placenta, Placenta Cot 25-normalized .b 1753 to 2747 994 to 1       994/994
(100 %)
10 diff
(99.0 %id)
BX427765 fetal liver, Liver .b 1763 to 2754 990 to 1       990/990
(100 %)
16 diff
(98.4 %id)
AL549095 placenta, Placenta Cot 25-normalized .b 1905 to 2761 855 to 1       855/921
(92 %)
20 diff
(97.9 %id)
AU144081 whole embryo, mainly head .b 2258 to 2776 523 to 6       518/578
(89 %)
0 diff
(100 %id)
NM_201437.1   .c 1 to 2720 2 to 2721 exact RefSeq,   2721/2721
(100 %)
4 diff
(99.9 %id)
DA021678   .c 1 to 585 2 to 586   tiling clone, capped   585/585
(100 %)
0 diff
(100 %id)
DA574455   .c 1 to 551 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
AU125645   .c 56 to 781 2 to 727   capped   726/726
(100 %)
1 diff
(99.9 %id)
CN347409 embryonic stem cells, DMSO-treated H9 cellline .c 58 to 284 1 to 227       227/227
(100 %)
0 diff
(100 %id)
DB197854 trachea .c 82 to 670 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
ES308103 beard hair, skin .c 122 to 258 1 to 138       138/138
(100 %)
4 diff
(97.2 %id)
DA663548   .c 180 to 735 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AK297957   .c 185 to 1427 1 to 1243 S22P tiling clone,   1243/1243
(100 %)
1 diff
(100.0 %id)
DC357807   .c 185 to 736 1 to 552       552/552
(100 %)
1 diff
(99.9 %id)
CT000073 T-Lymphocytes .c 193 to 998 1 to 806       806/806
(100 %)
0 diff
(100 %id)
X57198 Kidney .c 195 to 2713 1 to 2512 exact     2512/2517
(99 %)
18 diff
(99.3 %id)
CR993063 T-Lymphocytes .c 226 to 1127 1 to 903       903/903
(100 %)
1 diff
(99.9 %id)
DA904435.
matches multiple genes
  .c 378 to 935 3 to 562   tiling clone, capped also hits gene TCEA1P2 560/566
(98 %)
3 diff
(99.5 %id)
AW858465.
matches multiple genes
colon .c 408 to 530 5 to 127     also hits gene TCEA1P2 123/127
(96 %)
6 diff
(95.3 %id)
BE874962 large cell carcinoma, undifferentiated, lung .c 418 to 1155 1 to 732       732/1044
(70 %)
12 diff
(98.9 %id)
CX869632 embryonic stem .c 481 to 1230 10 to 759     Submitted on the opposite strand 750/759
(98 %)
0 diff
(100 %id)
DA260780 caudate nucleus .c 485 to 1050 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA372653 thalamus .c 488 to 1040 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
CN337911 embryonic stem cells, cell lines H1, H7, andH9 .c 508 to 1153 1 to 646       646/646
(100 %)
0 diff
(100 %id)
BG502536 embryonal carcinoma, testis .c 509 to 1237 1 to 731       731/731
(100 %)
7 diff
(99.1 %id)
BI857437 breast, mammary adenocarcinoma, cell line .c 568 to 1350 1 to 779       779/780
(99 %)
8 diff
(99.0 %id)
TI_57187574   .c 568 to 1350 53 to 831       779/780
(99 %)
8 diff
(99.0 %id)
TI_57187389   .c 570 to 1208 53 to 691       639/643
(99 %)
4 diff
(99.4 %id)
TI_57188093   .c 616 to 1305 56 to 744       689/689
(100 %)
2 diff
(99.8 %id)
BU159793 eye, retinoblastoma .c 619 to 1534 1 to 925       925/925
(100 %)
16 diff
(98.3 %id)
BP424469 small intestine .c 631 to 1130 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
AU127816   .c 631 to 1367 2 to 741   capped   740/741
(99 %)
13 diff
(98.3 %id)
DB047891 testis .c 633 to 1189 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
AU139477 placenta .c 636 to 1327 2 to 694   capped   693/693
(100 %)
3 diff
(99.6 %id)
CX782751 human embryonic stem cells .c 660 to 1450 1 to 791       791/791
(100 %)
1 diff
(99.9 %id)
BP326817 prostata .c 674 to 1253 1 to 580       580/580
(100 %)
0 diff
(100 %id)
DA578317   .c 681 to 1228 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BU194244.
matches multiple genes
bone marrow, from acute myelogenous leukemia .c 683 to 1429 1 to 750   tiling clone, also hits gene TCEA1P2 750/755
(99 %)
7 diff
(99.1 %id)
ES310416.
matches multiple genes
scalp interfollicular dermis, skin .c 692 to 1359 1 to 664     also hits gene TCEA1P2 664/670
(99 %)
11 diff
(98.4 %id)
ES310264 scalp interfollicular dermis, skin .c 697 to 1248 8 to 570       561/573
(97 %)
26 diff
(95.5 %id)
EB388895 eye, optic nerve .c 737 to 1520 1 to 784       784/784
(100 %)
1 diff
(99.9 %id)
BM709073 eye, optic nerve .c 763 to 1418 1 to 656       656/656
(100 %)
2 diff
(99.7 %id)
CN337910 embryonic stem cells, cell lines H1, H7, andH9 .c 764 to 1449 1 to 686       686/686
(100 %)
0 diff
(100 %id)
AU279390   .c 775 to 1322 1 to 548       548/548
(100 %)
0 diff
(100 %id)
CN337912 embryonic stem cells, cell lines H1, H7, andH9 .c 794 to 1498 1 to 705       705/705
(100 %)
1 diff
(99.9 %id)
BU522091 leiomyosarcoma, uterus .c 808 to 1552 1 to 751       751/898
(83 %)
8 diff
(99.2 %id)
T17014   .c 816 to 1059 18 to 262       245/262
(93 %)
7 diff
(97.4 %id)
DA133396 alzheimer cortex .c 819 to 1390 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BU153220 embryonal carcinoma, cell line, testis .c 821 to 1705 1 to 888       888/888
(100 %)
8 diff
(99.1 %id)
BG392404 embryonal carcinoma, cell line, testis .c 833 to 1661 1 to 824       824/1037
(79 %)
39 diff
(96.3 %id)
BM459679 leiomyosarcoma, uterus .c 845 to 1714 1 to 880       880/882
(99 %)
18 diff
(98.0 %id)
DA363036 subthalamic nucleus .c 851 to 1420 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
BF885390 testis_normal .c 878 to 979 22 to 123       102/123
(82 %)
10 diff
(91.9 %id)
BG286343 bladder, transitional cell papilloma, cell line .c 879 to 1526 1 to 649       649/756
(85 %)
2 diff
(99.8 %id)
CR987080 T-Lymphocytes .c 881 to 1711 1 to 831       831/832
(99 %)
4 diff
(99.6 %id)
BG256117 adenocarcinoma, cell line, Prostate .c 994 to 1740 1 to 747       747/1040
(71 %)
11 diff
(99.0 %id)
CN337919 embryonic stem cells, cell lines H1, H7, andH9 .c 1018 to 1362 1 to 345       345/345
(100 %)
0 diff
(100 %id)
CU443094 epidermis .c 1030 to 1519 505 to 16     Submitted on the opposite strand 490/519
(94 %)
0 diff
(100 %id)
BU507605 leiomyosarcoma, uterus .c 1045 to 1926 1 to 890       890/894
(99 %)
20 diff
(97.8 %id)
BX441406 brain, fetal brain .c 1048 to 1976 1 to 929       929/929
(100 %)
1 diff
(99.9 %id)
CA429056 Cell Line, Chondrosarcoma .c 1057 to 1824 783 to 16   AAA   768/768
(100 %)
2 diff
(99.8 %id)
BG203388   .c 1083 to 1833 1 to 745       745/745
(100 %)
17 diff
(97.8 %id)
BG500137 adenocarcinoma, Prostate .c 1132 to 1877 1 to 747       747/749
(99 %)
12 diff
(98.4 %id)
CB151846 cervix, Uterine .c 1148 to 1809 1 to 662       662/662
(100 %)
0 diff
(100 %id)
BE169114.
matches multiple genes
head_neck .c 1157 to 1516 376 to 17   tiling clone, Submitted on the opposite strand, also hits gene TCEA1P2 360/377
(95 %)
0 diff
(100 %id)
TI_154127517   .c 1173 to 2080 971 to 84   AAA   888/1001
(88 %)
25 diff
(97.6 %id)
CB987388 Pooled-Glandular .c 1183 to 1913 1 to 736       736/736
(100 %)
16 diff
(97.9 %id)
BM801601 duodenal adenocarcinoma, cell line, small intestine .c 1193 to 2085 12 to 915       904/924
(97 %)
13 diff
(98.6 %id)
BG120589 adenocarcinoma, cell line, Liver .c 1236 to 2067 1 to 833       833/921
(90 %)
53 diff
(94.3 %id)
CX782813 human embryonic stem cells .c 1271 to 2090 1 to 820   fully sequenced,   820/820
(100 %)
0 diff
(100 %id)
CB215108 normal endometrium, late proliferativephase, cycle day 13, uterus .c 1297 to 1934 1 to 638       638/638
(100 %)
0 diff
(100 %id)
BF084380.
matches multiple genes
colon .c 1306 to 1548 241 to 2   tiling clone, also hits gene TCEA1P2 240/248
(96 %)
0 diff
(100 %id)
CN337913 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 1306 to 1566 1 to 261       261/261
(100 %)
0 diff
(100 %id)
TI_154032202   .c 1319 to 2097 897 to 134   AAA   764/914
(83 %)
52 diff
(94.4 %id)
BU160793 bone marrow, from acute myelogenous leukemia .c 1332 to 2073 1 to 758       758/808
(93 %)
23 diff
(97.2 %id)
BM696319 eye, lens .c 1357 to 1910 1 to 554       554/554
(100 %)
0 diff
(100 %id)
AI093033 heart .c 1396 to 1831 1 to 436     Submitted on the opposite strand 436/436
(100 %)
0 diff
(100 %id)
CR604302 fetal brain .c 1400 to 2703 1 to 1304   tiling clone,   1304/1304
(100 %)
0 diff
(100 %id)
CA417189 Chondrosarcoma Cell line .c 1400 to 2080 696 to 19   AAA   678/678
(100 %)
3 diff
(99.6 %id)
BP423934 small intestine .c 1407 to 1969 1 to 563     Submitted on the opposite strand 563/563
(100 %)
0 diff
(100 %id)
TI_57228409   .c 1431 to 2090 51 to 710       660/660
(100 %)
1 diff
(99.9 %id)
BM013551 breast, mammary adenocarcinoma, cell line .c 1437 to 2218 13 to 794       782/794
(98 %)
6 diff
(99.3 %id)
TI_59391452   .c 1437 to 2218 107 to 888       782/794
(98 %)
6 diff
(99.3 %id)
BE539446 cervix .c 1498 to 1939 1 to 442       442/442
(100 %)
0 diff
(100 %id)
BF349926 head_neck .c 1564 to 1912 352 to 2       351/352
(99 %)
0 diff
(100 %id)
AA456186 ovarian tumor, ovary .c 1564 to 2037 1 to 474       474/474
(100 %)
0 diff
(100 %id)
BQ221033 embryonal carcinoma, cell line, testis .c 1566 to 2309 53 to 805       753/902
(83 %)
6 diff
(99.4 %id)
F05262.
matches multiple genes
brain, total brain .c 1569 to 1818 1 to 250     also hits gene TCEA1P2 250/250
(100 %)
1 diff
(99.6 %id)
CV571912 cornea, eye .c 1572 to 2146 1 to 575       575/575
(100 %)
0 diff
(100 %id)
BG529500 embryonal carcinoma, testis .c 1583 to 2387 1 to 804       804/806
(99 %)
23 diff
(97.2 %id)
AA258194 germinal center B cell .c 1587 to 2035 1 to 449       449/450
(99 %)
1 diff
(99.8 %id)
BM723877.
matches multiple genes
eye, fetal eye .c 1588 to 2274 1 to 687     also hits gene TCEA1P2 687/687
(100 %)
0 diff
(100 %id)
DT217496 brain .c 1601 to 2289 1 to 689       689/689
(100 %)
0 diff
(100 %id)
CN337915 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 1676 to 2450 1 to 776       776/776
(100 %)
6 diff
(99.3 %id)
BG496623 lung, mucoepidermoid carcinoma .c 1676 to 2495 1 to 835       835/840
(99 %)
38 diff
(95.5 %id)
BG529640 embryonal carcinoma, testis .c 1698 to 2507 1 to 814       814/814
(100 %)
29 diff
(96.5 %id)
BG285054 adenocarcinoma, cell line, Prostate .c 1716 to 2489 1 to 764       764/808
(94 %)
23 diff
(97.2 %id)
BF970552 adrenal cortex carcinoma, cell line, adrenal gland .c 1725 to 2475 1 to 745       745/948
(78 %)
15 diff
(98.5 %id)
BE172133 head_neck .c 1749 to 2024 284 to 10     Submitted on the opposite strand 275/294
(93 %)
0 diff
(100 %id)
BM760146 Ascites, stomach .c 1780 to 2268 1 to 489       489/489
(100 %)
0 diff
(100 %id)
TI_154107779   .c 1801 to 2712 956 to 69   AAA   888/967
(91 %)
28 diff
(97.2 %id)
CD677050 eye, Trabecular meshwork .c 1825 to 2466 1 to 642       642/642
(100 %)
0 diff
(100 %id)
BG434114 placenta .c 1832 to 2708 1 to 876       876/887
(98 %)
40 diff
(95.5 %id)
EH332952.
matches multiple genes
  .c 1841 to 1921 1 to 80     also hits gene TCEA1P2 80/80
(100 %)
1 diff
(98.8 %id)
TI_149291606   .c 1845 to 2712 943 to 88   AAA   856/908
(94 %)
20 diff
(97.8 %id)
TI_149296201   .c 1873 to 2712 911 to 83   AAA   829/975
(85 %)
10 diff
(99.0 %id)
TI_149297601   .c 1876 to 2712 901 to 73   AAA   829/952
(87 %)
11 diff
(98.9 %id)
TI_149300370   .c 1876 to 2714 923 to 93   AAA   831/959
(86 %)
19 diff
(98.1 %id)
AA306963 colon .c 1891 to 2295 406 to 2     Submitted on the opposite strand 405/406
(99 %)
0 diff
(100 %id)
BG614879 embryonal carcinoma, testis .c 1895 to 2708 1 to 814       814/837
(97 %)
49 diff
(94.2 %id)
AI631009 carcinoid, lung .c 1896 to 2201 1 to 306     Submitted on the opposite strand 306/306
(100 %)
0 diff
(100 %id)
BE219333 carcinoid, lung .c 1896 to 2413 1 to 518     Submitted on the opposite strand 518/518
(100 %)
0 diff
(100 %id)
BF752457 breast_normal .c 1907 to 2549 649 to 13     Submitted on the opposite strand 637/649
(98 %)
0 diff
(100 %id)
TI_149308239.
matches multiple genes
  .c 1919 to 2712 884 to 90   tiling clone, AAA also hits gene TCEA1P2 795/958
(82 %)
7 diff
(99.3 %id)
TI_149308310   .c 1919 to 2712 877 to 89   AAA   789/924
(85 %)
9 diff
(99.1 %id)
TI_154037539   .c 1926 to 2712 864 to 83   AAA   782/936
(83 %)
9 diff
(99.1 %id)
AA489308   .c 1938 to 2379 1 to 440   fully sequenced,   440/440
(100 %)
2 diff
(99.6 %id)
BE173154 head_neck .c 1946 to 2195 280 to 31     Submitted on the opposite strand 250/280
(89 %)
0 diff
(100 %id)
TI_149294975   .c 1957 to 2671 799 to 85   AAA   715/933
(76 %)
0 diff
(100 %id)
BM985200 lung .c 1957 to 2671 733 to 19   AAA   715/725
(98 %)
0 diff
(100 %id)
CX869709 embryonic stem .c 1968 to 2713 749 to 4     Submitted on the opposite strand 746/749
(99 %)
0 diff
(100 %id)
CA413930 Chondrosarcoma Grade II, Left Pelvis .c 1975 to 2712 753 to 16   AAA   738/738
(100 %)
0 diff
(100 %id)
BM982633 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 1979 to 2712 750 to 17   AAA   734/734
(100 %)
1 diff
(99.9 %id)
BM976449 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 1981 to 2714 752 to 19   AAA   734/734
(100 %)
3 diff
(99.6 %id)
BU684207 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 1988 to 2712 741 to 17   AAA   725/725
(100 %)
0 diff
(100 %id)
BQ019923 Chondrosarcoma, Left Pubic Bone .c 1990 to 2712 739 to 17   AAA   723/723
(100 %)
1 diff
(99.9 %id)
AW601528 breast .c 1991 to 2538 558 to 10       549/558
(98 %)
0 diff
(100 %id)
TI_154117643   .c 1995 to 2712 806 to 83   AAA   724/1027
(70 %)
23 diff
(97.8 %id)
BU629347 cell lines, Chondrosarcoma .c 1995 to 2712 735 to 19   AAA   717/717
(100 %)
1 diff
(99.9 %id)
BQ008706 Chondrosarcoma, Left Pelvis .c 1997 to 2712 732 to 17   AAA   716/716
(100 %)
0 diff
(100 %id)
CA412133 Chondrosarcoma Grade II, Left Pelvis .c 1998 to 2712 733 to 19   AAA   715/715
(100 %)
0 diff
(100 %id)
CK902600.
matches multiple genes
insulinoma, Pancreas .c 2008 to 2460 8 to 460     also hits gene TCEA1P2 453/460
(98 %)
6 diff
(98.7 %id)
TI_154132982   .c 2020 to 2712 799 to 106   AAA   694/895
(77 %)
24 diff
(97.4 %id)
BM460292 eye, retinoblastoma .c 2052 to 2712 1 to 661   AAA   661/661
(100 %)
0 diff
(100 %id)
AW804992 uterus .c 2057 to 2582 527 to 2       526/530
(99 %)
6 diff
(98.9 %id)
CX782732 human embryonic stem cells .c 2060 to 2712 679 to 27   fully sequenced, AAA   653/653
(100 %)
1 diff
(99.9 %id)
BF036430 adenocarcinoma, ovary .c 2061 to 2698 644 to 1     Submitted on the opposite strand 644/644
(100 %)
11 diff
(98.3 %id)
AW804693 uterus .c 2063 to 2572 520 to 10       511/520
(98 %)
0 diff
(100 %id)
BF741595 bocio_tumor .c 2069 to 2320 264 to 4     Submitted on the opposite strand 261/282
(92 %)
0 diff
(100 %id)
BQ007977 Chondrosarcoma, Left Pelvis .c 2074 to 2712 651 to 13   AAA   639/639
(100 %)
0 diff
(100 %id)
BY995068   .c 2074 to 2712 4 to 642   AAA   639/642
(99 %)
6 diff
(99.1 %id)
CA447214 Chondrosarcoma, Left Pelvis .c 2076 to 2712 653 to 17   AAA   637/637
(100 %)
0 diff
(100 %id)
BF742015 bocio_tumor .c 2082 to 2436 356 to 6     Submitted on the opposite strand 351/356
(98 %)
0 diff
(100 %id)
TI_151714490   .c 2083 to 2710 791 to 158       634/1031
(61 %)
0 diff
(100 %id)
BU732534 eye, optic nerve .c 2093 to 2712 638 to 19   AAA   620/620
(100 %)
0 diff
(100 %id)
BQ189658.
matches multiple genes
eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 2105 to 2659 1 to 555   AAA also hits gene TCEA1P2 555/555
(100 %)
10 diff
(98.2 %id)
TI_151734478   .c 2105 to 2657 632 to 80   AAA   553/974
(56 %)
0 diff
(100 %id)
AW062534.
matches multiple genes
colon .c 2125 to 2344 248 to 28     also hits gene TCEA1P2 221/248
(89 %)
0 diff
(100 %id)
AU158043 placenta .c 2154 to 2712 557 to 1       557/557
(100 %)
10 diff
(98.3 %id)
AA188205   .c 2155 to 2694 533 to 1     Submitted on the opposite strand 533/535
(99 %)
20 diff
(96.3 %id)
AU149258   .c 2159 to 2712 550 to 1       550/550
(100 %)
12 diff
(97.9 %id)
BG012140 placenta_normal .c 2160 to 2555 395 to 3       393/395
(99 %)
0 diff
(100 %id)
AU150252   .c 2161 to 2712 550 to 1       550/550
(100 %)
15 diff
(97.3 %id)
BF593762 brain, glioblastoma (pooled) .c 2165 to 2706 542 to 1       542/542
(100 %)
0 diff
(100 %id)
AW305318 brain, three pooled meningiomas .c 2172 to 2712 541 to 1       541/541
(100 %)
0 diff
(100 %id)
BQ016366 lung, Metastatic Chondrosarcoma .c 2174 to 2714 559 to 19   tiling clone, AAA   541/541
(100 %)
0 diff
(100 %id)
AA974415 pooled germ cell tumors .c 2176 to 2713 541 to 4       538/541
(99 %)
0 diff
(100 %id)
AA716501 heart .c 2186 to 2713 535 to 8       528/535
(98 %)
0 diff
(100 %id)
DB370409.
matches multiple genes
  .c 2186 to 2712 524 to 1     also hits gene TCEA1P2 524/565
(92 %)
10 diff
(98.3 %id)
BF108747.
matches multiple genes
pooled .c 2195 to 2713 524 to 6     also hits gene TCEA1P2 519/524
(99 %)
0 diff
(100 %id)
AW172950 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 2198 to 2713 516 to 1       516/516
(100 %)
0 diff
(100 %id)
AI753604 bone marrow stroma .c 2208 to 2707 500 to 1       500/500
(100 %)
0 diff
(100 %id)
AW068949 bone marrow stroma .c 2208 to 2575 368 to 1       368/368
(100 %)
0 diff
(100 %id)
BU735370 eye, lens .c 2230 to 2706 495 to 19   AAA   477/477
(100 %)
2 diff
(99.6 %id)
DB571351 hypothalamus .c 2235 to 2712 1 to 478     Submitted on the opposite strand 478/478
(100 %)
1 diff
(99.8 %id)
AW516120.
matches multiple genes
moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 2242 to 2713 476 to 5     also hits gene TCEA1P2 472/476
(99 %)
0 diff
(100 %id)
AI471532 colon, moderately-differentiated adenocarcinoma .c 2262 to 2706 445 to 1       445/445
(100 %)
0 diff
(100 %id)
DB566525 hypothalamus .c 2263 to 2712 1 to 450     Submitted on the opposite strand 450/450
(100 %)
0 diff
(100 %id)
DB574459 hypothalamus .c 2267 to 2712 1 to 446     Submitted on the opposite strand 446/446
(100 %)
0 diff
(100 %id)
DB519381 testis .c 2276 to 2710 1 to 435     Submitted on the opposite strand 435/435
(100 %)
0 diff
(100 %id)
AA258187 germinal center B cell .c 2280 to 2706 427 to 1       427/427
(100 %)
0 diff
(100 %id)
AA258186 germinal center B cell .c 2285 to 2706 422 to 1       422/422
(100 %)
0 diff
(100 %id)
AI633122 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 2287 to 2712 437 to 12   AAA   426/426
(100 %)
0 diff
(100 %id)
AW316571 brain, three pooled meningiomas .c 2287 to 2713 427 to 1       427/427
(100 %)
0 diff
(100 %id)
DB563000 hypothalamus .c 2295 to 2704 1 to 410     Submitted on the opposite strand 410/412
(99 %)
3 diff
(99.3 %id)
BF741680 bocio_tumor .c 2296 to 2539 254 to 11     Submitted on the opposite strand 244/254
(96 %)
0 diff
(100 %id)
AA862862.
matches multiple genes
pooled germ cell tumors .c 2307 to 2713 412 to 6     also hits gene TCEA1P2 407/412
(98 %)
0 diff
(100 %id)
AI246746 adenocarcinoma, colon .c 2311 to 2706 396 to 1       396/396
(100 %)
0 diff
(100 %id)
BF741690 bocio_tumor .c 2316 to 2579 268 to 6     Submitted on the opposite strand 263/268
(98 %)
0 diff
(100 %id)
AA912423 pooled .c 2332 to 2706 375 to 1       375/375
(100 %)
0 diff
(100 %id)
AA601552 breast .c 2333 to 2706 374 to 1       374/374
(100 %)
0 diff
(100 %id)
DN919094   .c 2338 to 2710 373 to 1       373/373
(100 %)
5 diff
(98.7 %id)
AA862764 pooled germ cell tumors .c 2341 to 2713 378 to 6       373/378
(98 %)
0 diff
(100 %id)
AA486287   .c 2349 to 2708 360 to 1   fully sequenced,   360/360
(100 %)
2 diff
(99.5 %id)
TI_57161973   .c 2353 to 2712 34 to 390   AAA   357/390
(91 %)
6 diff
(98.5 %id)
BG960957 colon .c 2361 to 2540 180 to 1       180/185
(97 %)
8 diff
(95.7 %id)
AI419671 brain, glioblastoma (pooled) .c 2379 to 2657 279 to 1       279/279
(100 %)
0 diff
(100 %id)
AA653973 epithelium (cell line), Prostate .c 2400 to 2705 306 to 1       306/306
(100 %)
0 diff
(100 %id)
BQ320576 colon .c 2409 to 2537 141 to 10       132/141
(93 %)
0 diff
(100 %id)
EH347305   .c 2444 to 2532 1 to 89       89/89
(100 %)
0 diff
(100 %id)
EH321463   .c 2480 to 2561 1 to 80       80/80
(100 %)
3 diff
(96.3 %id)
F01513.
matches multiple genes
brain, total brain .c 2482 to 2712 231 to 1     also hits gene TCEA1P2 231/231
(100 %)
0 diff
(100 %id)
BQ378989 uterus_tumor .c 2484 to 2690 214 to 8       207/214
(96 %)
0 diff
(100 %id)
AA757298   .c 2498 to 2706 209 to 1       209/209
(100 %)
0 diff
(100 %id)
CV575690 cornea, eye .c 2504 to 2712 1 to 209   AAA   209/209
(100 %)
0 diff
(100 %id)
DB246931   .d 1 to 533 7 to 539   tiling clone, capped   538/538
(100 %)
1 diff
(99.9 %id)
DB350717   .d 2125 to 2693 570 to 1   tiling clone,   570/570
(100 %)
3 diff
(99.5 %id)
DA390603 thalamus .e 1 to 501 10 to 510   tiling clone, capped   509/509
(100 %)
2 diff
(99.7 %id)
BX538034 human endometrium carcinoma cell line .e 40 to 3005 4 to 2968 R199G tiling clone, available from DKFZ,   2965/2967
(99 %)
5 diff
(99.9 %id)
BI599263.
matches multiple genes
brain, hypothalamus .f 1 to 692 6 to 733   tiling clone, also hits gene TCEA1P2 644/921
(69 %)
40 diff
(95.7 %id)
TI_45212113   .f 1 to 692 91 to 818       700/1006
(69 %)
46 diff
(95.5 %id)
BG106440 lymph, lymphoma, cell line .f 10 to 689 1 to 681   tiling clone,   681/842
(80 %)
5 diff
(99.5 %id)
BI818484 pooled brain, lung, testis .f 61 to 807 1 to 749   tiling clone,   749/768
(97 %)
10 diff
(98.7 %id)
AK297729   .g 1 to 1428 5 to 1432 exact tiling clone,   1432/1432
(100 %)
1 diff
(100.0 %id)
DC355064   .g 1 to 564 5 to 568 exact     568/568
(100 %)
0 diff
(100 %id)
CD050560 embryonic trophoblasts, made from WA01 stemcells .h 1 to 816 19 to 842 exact tiling clone,   824/888
(92 %)
21 diff
(97.7 %id)
DA274346 corpus callosum .i 1 to 408 165 to 572   tiling clone, capped   408/571
(71 %)
6 diff
(99.0 %id)
DA365042 subthalamic nucleus .i 6 to 558 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA499189 brain .i 44 to 577 2 to 535   tiling clone, capped   534/534
(100 %)
0 diff
(100 %id)
BF683858 leiomyosarcoma cell line, uterus .i 60 to 739 1 to 682 A19E K20S S21L L22S I23S ... tiling clone,   682/682
(100 %)
27 diff
(96.1 %id)
DB150151 thymus .j 1 to 580 3 to 583 L31P K32* tiling clone, capped   582/585
(99 %)
2 diff
(99.7 %id)
AL702853 human skeletal muscle .k 1 to 555 1 to 555   tiling clone,   555/555
(100 %)
0 diff
(100 %id)
CN295079 embryonic stem cells, DMSO-treated H9 cellline .k 15 to 229 1 to 215       215/215
(100 %)
0 diff
(100 %id)
DA666371   .k 81 to 625 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
BE826665 lung_normal .k 420 to 1032 627 to 15 T2X tiling clone,   613/628
(97 %)
0 diff
(100 %id)
BE826663 lung_normal .k 463 to 1032 591 to 23   tiling clone,   569/610
(93 %)
4 diff
(99.4 %id)
BE764178 nervous_tumor .k 571 to 991 1 to 421       421/421
(100 %)
4 diff
(99.1 %id)
BE764250 nervous_tumor .k 586 to 916 1 to 331       331/331
(100 %)
8 diff
(97.6 %id)
DA503675 brain .l 1 to 562 2 to 566 exact tiling clone, capped   565/565
(100 %)
1 diff
(99.9 %id)
DA256923 caudate nucleus .m 1 to 554 2 to 555 exact tiling clone, capped   554/554
(100 %)
0 diff
(100 %id)
CV358774 breast_normal .m 360 to 727 375 to 9   tiling clone, Submitted on the opposite strand 367/376
(97 %)
0 diff
(100 %id)
GD149087   .n-u 1 to 127 1 to 127       127/128
(99 %)
10 diff
(92.2 %id)
AW798429 uterus .n-u 13 to 249 238 to 6   tiling clone,   233/238
(97 %)
0 diff
(100 %id)
AW972893   .n-u 36 to 570 105 to 640 exact     536/640
(83 %)
6 diff
(99.1 %id)
AA524806 ovary .n-u 50 to 602 1 to 553 exact tiling clone,   553/558
(99 %)
1 diff
(99.9 %id)
AA827948 ovary .n-u 50 to 339 1 to 290 exact     290/290
(100 %)
1 diff
(99.7 %id)
BF876193 lung_tumor .o 1 to 253 286 to 29 D8G A10S T11A tiling clone, Submitted on the opposite strand 258/286
(90 %)
12 diff
(95.9 %id)
CA313764 Human Lung Epithelial cells, lung .p-u 1 to 240 258 to 19 exact tiling clone, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 240/326
(73 %)
1 diff
(99.7 %id)
BQ225711.
matches multiple genes
large cell carcinoma, lung P2.a-u 6 to 806 1 to 807     also hits gene TCEA1P2 807/927
(87 %)
26 diff
(97.2 %id)
CD644119.
matches multiple genes
Embryonic Stem cells P2.a-u 10 to 817 4 to 803     also hits gene TCEA1P2 800/803
(99 %)
23 diff
(97.2 %id)
BI254662.
matches multiple genes
cervical carcinoma cell line, cervix P2.a-u 14 to 797 1 to 786     also hits gene TCEA1P2 786/790
(99 %)
26 diff
(96.8 %id)
BX416235.
matches multiple genes
neuroblastoma P2.a-u 19 to 907 1 to 882     also hits gene TCEA1P2 882/930
(94 %)
14 diff
(98.5 %id)
TI_154148730.
matches multiple genes
  P2.a-u 46 to 554 80 to 588     also hits gene TCEA1P2 509/509
(100 %)
2 diff
(99.7 %id)
BG724399.
matches multiple genes
testis P2.a-u 78 to 820 1 to 743   tiling clone, also hits gene TCEA1P2 743/743
(100 %)
6 diff
(99.2 %id)
DB453931.
matches multiple genes
testis P2.a-u 120 to 613 1 to 494     also hits gene TCEA1P2 494/494
(100 %)
3 diff
(99.4 %id)
AW858465.
matches multiple genes
colon P2.a-u 288 to 410 5 to 127     also hits gene TCEA1P2 123/127
(96 %)
6 diff
(95.3 %id)
BI599263.
matches multiple genes
brain, hypothalamus P2.a-u 451 to 667 507 to 731   tiling clone, also hits gene TCEA1P2 628/921
(68 %)
24 diff
(97.4 %id)
BU194244.
matches multiple genes
bone marrow, from acute myelogenous leukemia P2.a-u 563 to 1309 1 to 750   tiling clone, also hits gene TCEA1P2 750/755
(99 %)
8 diff
(99.0 %id)
ES310416.
matches multiple genes
scalp interfollicular dermis, skin P2.a-u 572 to 1239 1 to 664     also hits gene TCEA1P2 664/670
(99 %)
12 diff
(98.3 %id)
BE169114.
matches multiple genes
head_neck P2.a-u 1037 to 1396 376 to 17   tiling clone, Submitted on the opposite strand, also hits gene TCEA1P2 360/377
(95 %)
0 diff
(100 %id)
BF084380.
matches multiple genes
colon P2.a-u 1186 to 1427 241 to 2   tiling clone, also hits gene TCEA1P2 240/248
(96 %)
0 diff
(100 %id)
DA737789.
matches multiple genes
  P2.a-u 1421 to 2219 2 to 800   tiling clone, capped also hits gene TCEA1P2 799/799
(100 %)
15 diff
(98.2 %id)
F05262.
matches multiple genes
brain, total brain P2.a-u 1449 to 1698 1 to 250     also hits gene TCEA1P2 250/250
(100 %)
2 diff
(99.2 %id)
EH332952.
matches multiple genes
  P2.a-u 1721 to 1801 1 to 80     also hits gene TCEA1P2 80/80
(100 %)
1 diff
(98.8 %id)
TI_149308239.
matches multiple genes
  P2.a-u 1799 to 2598 884 to 90   tiling clone, AAA also hits gene TCEA1P2 795/958
(82 %)
6 diff
(99.4 %id)
BM680043.
matches multiple genes
eye, fetal eye P2.a-u 1848 to 2538 708 to 19   tiling clone, AAA also hits gene TCEA1P2 690/691
(99 %)
5 diff
(99.3 %id)
CK902600.
matches multiple genes
insulinoma, Pancreas P2.a-u 1888 to 2341 8 to 460     also hits gene TCEA1P2 453/460
(98 %)
6 diff
(98.7 %id)
CK300786.
matches multiple genes
eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid P2.a-u 1985 to 2538 571 to 19   AAA also hits gene TCEA1P2 553/562
(98 %)
4 diff
(99.3 %id)
AW062534.
matches multiple genes
colon P2.a-u 2005 to 2225 248 to 28     also hits gene TCEA1P2 221/248
(89 %)
0 diff
(100 %id)
BF108747.
matches multiple genes
pooled P2.a-u 2076 to 2604 524 to 1     also hits gene TCEA1P2 524/524
(100 %)
4 diff
(99.3 %id)
AW516120.
matches multiple genes
moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus P2.a-u 2123 to 2603 476 to 1     also hits gene TCEA1P2 476/476
(100 %)
4 diff
(99.2 %id)
AA862862.
matches multiple genes
pooled germ cell tumors P2.a-u 2188 to 2604 412 to 1     also hits gene TCEA1P2 412/412
(100 %)
4 diff
(99.1 %id)
DA904435.
matches multiple genes
  P2.b 1 to 559 2 to 562 Q94R R160K K161E N162K V163C ... tiling clone, capped also hits gene TCEA1P2 561/566
(99 %)
5 diff
(99.2 %id)
TI_57167573   Gene TCEA1, variant not shown         This clone was ignored    
TI_159696651   Gene TCEA1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n-u, .o, .p-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI