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Gene TBX1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
33 supporting clones for gene TBX1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF373867   .a 1 to 2082 1 to 2082 exact tiling clone,   2082/2082
(100 %)
0 diff
(100 %id)
NM_080647.1   .a 1 to 2082 1 to 2082 exact RefSeq,   2082/2082
(100 %)
0 diff
(100 %id)
BM560454 astrocytoma grade IV, cell line, brain .a 943 to 1349 1 to 408       408/1376
(29 %)
15 diff
(99.0 %id)
AI016780   .a 1047 to 1494 448 to 1       448/448
(100 %)
0 diff
(100 %id)
W72087 heart .a 1073 to 1521 460 to 7       454/507
(89 %)
11 diff
(97.9 %id)
AI198532   .a 1101 to 1526 426 to 1       426/426
(100 %)
0 diff
(100 %id)
AI802713 colon, colonic mucosa from 5 ulcerative colitispatients .a 1113 to 1526 414 to 1       414/414
(100 %)
2 diff
(99.6 %id)
AW196245 pooled germ cell tumors .a 1148 to 1476 335 to 1       335/344
(97 %)
10 diff
(97.1 %id)
AW295963   .a 1291 to 1525 235 to 1       235/235
(100 %)
1 diff
(99.6 %id)
BF513123   .a 1550 to 1969 1 to 420     Submitted on the opposite strand 420/430
(97 %)
1 diff
(99.8 %id)
AW074836 pooled .a 1569 to 2084 519 to 4   tiling clone,   516/528
(97 %)
0 diff
(100 %id)
BE328069 carcinoid, lung .a 1609 to 2083 475 to 1       475/475
(100 %)
2 diff
(99.6 %id)
BF115770 carcinoid, lung .a 1621 to 2084 468 to 4       465/468
(99 %)
0 diff
(100 %id)
BE218311 carcinoid, lung .a 1647 to 2083 437 to 1       437/437
(100 %)
1 diff
(99.8 %id)
AJ346433 pectoral muscle (after mastectomy) .a 1732 to 2023 1 to 292       292/292
(100 %)
1 diff
(99.7 %id)
AA759130   .a 1743 to 2084 337 to 2       336/337
(99 %)
0 diff
(100 %id)
BM977495 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1890 to 2082 211 to 19   AAA   193/193
(100 %)
0 diff
(100 %id)
AF012130 adult skeletal muscle; testis .b 1 to 1462 1 to 1462 exact tiling clone, AAA   1462/1462
(100 %)
0 diff
(100 %id)
NM_080646.1   .b 1 to 1462 1 to 1462 exact RefSeq, AAA   1462/1462
(100 %)
0 diff
(100 %id)
AF012131 adult skeletal muscle; testis .c 1 to 1538 1 to 1538 exact tiling clone,   1538/1538
(100 %)
0 diff
(100 %id)
NM_005992.1   .c 1 to 1538 1 to 1538 exact RefSeq,   1538/1538
(100 %)
0 diff
(100 %id)
BG149355 carcinoid, lung .c 408 to 922 1 to 513     Submitted on the opposite strand 516/513
(100 %)
6 diff
(98.9 %id)
BE468028 carcinoid, lung .c 409 to 775 1 to 367     Submitted on the opposite strand 367/367
(100 %)
0 diff
(100 %id)
AA904338 carcinoid, lung .c 432 to 538 1 to 106     Submitted on the opposite strand 106/108
(98 %)
2 diff
(98.2 %id)
AI287678 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 432 to 820 1 to 389     Submitted on the opposite strand 389/389
(100 %)
2 diff
(99.5 %id)
AW606267 head_neck .c 456 to 797 17 to 357       341/357
(95 %)
8 diff
(97.8 %id)
H55663   .c 642 to 813 1 to 172       172/172
(100 %)
1 diff
(99.5 %id)
BX101417 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 676 to 850 177 to 3     Submitted on the opposite strand 175/177
(98 %)
0 diff
(100 %id)
CN295264 embryonic stem cells, DMSO-treated H9 cellline .d-u 1 to 447 1 to 447 exact tiling clone,   447/447
(100 %)
0 diff
(100 %id)
AI828936 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 1 to 376 376 to 1 exact tiling clone,   376/376
(100 %)
0 diff
(100 %id)
BF434697 fibrotheoma, ovary .f 1 to 546 1 to 546 exact tiling clone, Submitted on the opposite strand 546/546
(100 %)
0 diff
(100 %id)
BE828616 lung_tumor .f 4 to 311 361 to 53       309/383
(80 %)
0 diff
(100 %id)
BQ371074 prostate_normal .g-u 1 to 411 9 to 414 M2I R3G P4L N5H D6T ... tiling clone,   406/414
(98 %)
6 diff
(98.6 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC