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Gene TBC1D7TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
288 supporting clones for gene TBC1D7 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI862316 breast, mammary adenocarcinoma, cell line .a 1 to 695 1 to 694   tiling clone,   694/695
(99 %)
3 diff
(99.6 %id)
TI_57191875   .a 1 to 695 75 to 768       694/695
(99 %)
3 diff
(99.6 %id)
TI_57189464   .a 75 to 632 49 to 606       558/558
(100 %)
4 diff
(99.3 %id)
BI860507 breast, mammary adenocarcinoma, cell line .a 76 to 632 1 to 557   tiling clone,   557/557
(100 %)
4 diff
(99.3 %id)
BF691346 melanotic melanoma, high MDR, skin .a 138 to 853 1 to 706       706/895
(78 %)
24 diff
(97.4 %id)
BF570890 melanotic melanoma, high MDR, skin .a 140 to 868 1 to 719       719/857
(83 %)
57 diff
(93.4 %id)
BF572079 melanotic melanoma, high MDR, skin .a 140 to 669 1 to 529       529/529
(100 %)
17 diff
(96.8 %id)
BF571642 melanotic melanoma, high MDR, skin .a 140 to 819 1 to 691       691/823
(83 %)
33 diff
(96.0 %id)
BF979017 melanotic melanoma, high MDR, skin .a 140 to 755 1 to 621       621/863
(71 %)
22 diff
(97.5 %id)
BF979063 melanotic melanoma, high MDR, skin .a 140 to 756 1 to 615       615/897
(68 %)
13 diff
(98.6 %id)
TI_57190856   .a 151 to 819 49 to 716       668/675
(98 %)
2 diff
(99.8 %id)
BI857683 breast, mammary adenocarcinoma, cell line .a 152 to 819 1 to 667   tiling clone,   667/674
(98 %)
2 diff
(99.8 %id)
BU620048 Cell Line, Chondrosarcoma .a 731 to 1460 748 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (36/36 A in genome downstream of last aligned base) 730/730
(100 %)
0 diff
(100 %id)
DA511800 brain .b -9 to 542 2 to 553   tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
CN263835 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 11 to 195 1 to 185   tiling clone,   185/185
(100 %)
5 diff
(97.3 %id)
BX354770 Neuroblastoma Cot 25-normalized .b 16 to 697 1 to 683   fully sequenced,   683/683
(100 %)
1 diff
(99.9 %id)
BY995053   .b 81 to 797 18 to 734   tiling clone,   719/734
(97 %)
6 diff
(99.2 %id)
BX354769 Neuroblastoma Cot 25-normalized .b 636 to 1151 516 to 1   tiling clone, fully sequenced,   516/516
(100 %)
13 diff
(97.5 %id)
NM_001143965.2   .c 1 to 1137 1 to 1137 exact RefSeq, AAA   1137/1137
(100 %)
0 diff
(100 %id)
DB126719 thymus .c 8 to 555 2 to 549   tiling clone, capped   548/548
(100 %)
0 diff
(100 %id)
BC007054 Kidney, hypernephroma .c 12 to 1137 1 to 1126 exact tiling clone, available from MGC, AAA   1126/1126
(100 %)
2 diff
(99.9 %id)
BP317973 pericardium .c 12 to 591 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
DA125954 cerebellum .c 13 to 592 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA748824   .c 13 to 574 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
AA258658 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 107 to 215 1 to 109       109/109
(100 %)
0 diff
(100 %id)
AA252212 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 226 to 688 1 to 463       463/463
(100 %)
0 diff
(100 %id)
AA252213 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 711 to 1138 427 to 1   tiling clone,   427/427
(100 %)
1 diff
(99.8 %id)
AA258659 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1047 to 1138 92 to 1       92/92
(100 %)
0 diff
(100 %id)
NM_001143964.2   .d 1 to 1277 1 to 1277 exact RefSeq, AAA   1277/1277
(100 %)
0 diff
(100 %id)
BG740563 skin .d 9 to 859 1 to 860   tiling clone,   860/861
(99 %)
16 diff
(98.2 %id)
DT220152 brain .d 12 to 602 1 to 591       591/591
(100 %)
2 diff
(99.7 %id)
DT220582 brain .d 12 to 654 1 to 643       643/643
(100 %)
1 diff
(99.9 %id)
DA058581 cerebellum .d 13 to 559 2 to 548   tiling clone, capped   547/549
(99 %)
1 diff
(99.9 %id)
CB144998 Liver .d 15 to 438 1 to 424       424/424
(100 %)
3 diff
(99.3 %id)
BQ673160 epidermoid carcinoma, cell line, salivary gland .d 19 to 765 1 to 746       746/942
(79 %)
11 diff
(98.9 %id)
BQ669414 epidermoid carcinoma, cell line, salivary gland .d 19 to 751 1 to 740       740/996
(74 %)
28 diff
(97.2 %id)
TI_151776081   .d 19 to 630 104 to 717       614/1059
(57 %)
13 diff
(98.8 %id)
BG391312 embryonal carcinoma, cell line, testis .d 37 to 841 1 to 813       813/864
(94 %)
23 diff
(97.4 %id)
BI850881 embryonal carcinoma, cell line, testis .d 37 to 622 1 to 586       586/586
(100 %)
3 diff
(99.5 %id)
AL519553 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .d 44 to 798 1 to 755   fully sequenced,   755/755
(100 %)
2 diff
(99.8 %id)
BP212223 cerebrum .d 64 to 645 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BP277598 Kidney .d 64 to 633 1 to 570       570/570
(100 %)
0 diff
(100 %id)
DA797206 brain .d 65 to 559 2 to 496   capped   495/495
(100 %)
2 diff
(99.6 %id)
AK223445 cerebrum .d 76 to 1277 1 to 1202 V59I tiling clone, AAA   1202/1202
(100 %)
2 diff
(99.9 %id)
BE783877 eye, retinoblastoma .d 85 to 760 1 to 675       675/675
(100 %)
1 diff
(99.9 %id)
BF027435 melanotic melanoma, skin .d 155 to 813 16 to 675       660/675
(97 %)
12 diff
(98.3 %id)
AL519552 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .d 737 to 1254 517 to 1   fully sequenced,   517/517
(100 %)
4 diff
(99.3 %id)
BM548663 brain, hippocampus .e 1 to 552 10 to 567   tiling clone,   558/1060
(52 %)
13 diff
(98.8 %id)
NM_016495.4   .e 20 to 1316 1 to 1297 exact RefSeq, AAA   1297/1297
(100 %)
0 diff
(100 %id)
CX761031 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .e 55 to 728 1 to 671       671/871
(77 %)
17 diff
(98.1 %id)
DN992467 brain, whole brain .e 88 to 885 8 to 805       798/805
(99 %)
6 diff
(99.3 %id)
AF151073 umbilical cord blood .e 193 to 1316 1 to 1122 exact tiling clone, AAA   1122/1122
(100 %)
1 diff
(100.0 %id)
AA193637.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 193 to 582 1 to 388     also hits gene fynoyby 388/391
(99 %)
4 diff
(99.0 %id)
BF570825 melanotic melanoma, high MDR, skin .e 204 to 669 1 to 465       465/701
(66 %)
13 diff
(98.2 %id)
AK057228 testis .f 1 to 2312 1 to 2312 H74M A75P K76R V77* tiling clone, available from FLJ,   2312/2312
(100 %)
7 diff
(99.7 %id)
DA406086 thalamus .f 2 to 585 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DB019603 testis .f 2 to 778 2 to 775   capped   774/774
(100 %)
5 diff
(99.4 %id)
D81882 brain .f 9 to 286 1 to 273       273/273
(100 %)
8 diff
(97.1 %id)
BG573167 placenta .f 9 to 685 1 to 679       679/679
(100 %)
6 diff
(99.2 %id)
BF031170 hypernephroma, Kidney .f 20 to 728 1 to 696       696/857
(81 %)
28 diff
(96.8 %id)
TI_57179042   .f 22 to 892 27 to 899       873/919
(94 %)
18 diff
(98.1 %id)
BG700678 brain, hippocampus .f 23 to 589 1 to 566       566/566
(100 %)
8 diff
(98.6 %id)
BI769274 pooled lung and spleen .f 26 to 892 1 to 869       869/889
(97 %)
12 diff
(98.7 %id)
DB449629 testis .f 28 to 473 1 to 443       443/443
(100 %)
8 diff
(98.2 %id)
BP319580 pericardium .f 31 to 612 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BG762675 melanotic melanoma, high MDR (cell line), skin .f 41 to 864 1 to 826       826/830
(99 %)
9 diff
(99.0 %id)
BE002346 breast_normal .f 89 to 320 231 to 1     Submitted on the opposite strand 231/426
(54 %)
4 diff
(99.1 %id)
BG768673 melanotic melanoma, high MDR (cell line), skin .f 89 to 801 7 to 719       713/719
(99 %)
7 diff
(99.1 %id)
BM742347 Ascites, stomach .f 96 to 719 1 to 624       624/624
(100 %)
0 diff
(100 %id)
BM784853 Ascites, stomach .f 96 to 500 1 to 405       405/405
(100 %)
1 diff
(99.8 %id)
AB449888 brain .f 98 to 979 1 to 882 exact tiling clone,   882/882
(100 %)
0 diff
(100 %id)
CV027253 mixed .f 98 to 735 1 to 638       638/638
(100 %)
1 diff
(99.9 %id)
BX099741 liver and spleen .f 143 to 845 1 to 703       703/710
(99 %)
1 diff
(99.9 %id)
BF989651 placenta_normal .f 153 to 486 14 to 346       333/398
(83 %)
14 diff
(96.5 %id)
AA306506   .f 192 to 645 1 to 454       454/454
(100 %)
2 diff
(99.6 %id)
AW955259   .f 193 to 891 1 to 700       700/717
(97 %)
10 diff
(98.7 %id)
TI_1948211262   .f 286 to 978 808 to 112       697/1288
(54 %)
31 diff
(97.6 %id)
TI_1948210994   .f 290 to 978 814 to 124       691/1168
(59 %)
12 diff
(99.0 %id)
TI_1948211546   .f 294 to 978 815 to 122       694/1196
(58 %)
20 diff
(98.4 %id)
BQ680897 melanotic melanoma, cell line, skin .f 297 to 883 1 to 590       590/1232
(47 %)
12 diff
(99.1 %id)
FN159281 breast carcinoma .f 327 to 411 1 to 82       82/82
(100 %)
4 diff
(95.2 %id)
BP332422 renal proximal tubule .f 328 to 892 1 to 564       564/572
(98 %)
4 diff
(99.4 %id)
BU943061 mixed (pool of 40 RNAs) .f 331 to 761 1 to 435       435/841
(51 %)
11 diff
(98.7 %id)
BE894847 melanotic melanoma, skin .f 355 to 1050 1 to 705       705/805
(87 %)
41 diff
(95.0 %id)
TI_1948211818   .f 386 to 978 718 to 123       596/1230
(48 %)
17 diff
(98.7 %id)
BQ304927 breast .f 446 to 892 482 to 34       449/498
(90 %)
11 diff
(97.8 %id)
N32475 melanocyte .f 488 to 892 1 to 409       409/532
(76 %)
6 diff
(98.9 %id)
BE170078 head_neck .f 560 to 793 1 to 237       237/239
(99 %)
13 diff
(94.6 %id)
AI279529 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 688 to 1070 474 to 79       396/474
(83 %)
0 diff
(100 %id)
DB306449 caudate nucleus .f 1016 to 1539 1 to 524   tiling clone, Submitted on the opposite strand 524/524
(100 %)
1 diff
(99.9 %id)
DB335640 testis .f 1853 to 2312 460 to 1       460/460
(100 %)
15 diff
(96.8 %id)
NM_001143966.2   .g 1 to 1056 1 to 1056 exact RefSeq, AAA   1056/1056
(100 %)
0 diff
(100 %id)
DA627041 Kidney .g 9 to 535 2 to 528   tiling clone, capped   527/527
(100 %)
0 diff
(100 %id)
DA616577   .g 13 to 592 2 to 594   capped   593/593
(100 %)
9 diff
(98.5 %id)
BC050465 Eye, retinoblastoma .g 31 to 1056 1 to 1026 exact available from MGC, AAA   1026/1026
(100 %)
0 diff
(100 %id)
BQ424285 eye, retinoblastoma .g 33 to 693 1 to 663       663/933
(71 %)
12 diff
(98.8 %id)
AY826820   .g 47 to 1053 1 to 1007 exact AAA   1007/1020
(98 %)
2 diff
(99.9 %id)
EL734584 mixed .g 109 to 776 1 to 664       664/669
(99 %)
7 diff
(99.0 %id)
TI_1948210993   .g 109 to 279 133 to 303       171/200
(85 %)
6 diff
(97.0 %id)
TI_1948211259   .g 109 to 554 132 to 577       446/1418
(31 %)
17 diff
(98.9 %id)
TI_1948211260   .g 109 to 320 136 to 347       212/240
(88 %)
6 diff
(97.5 %id)
TI_1948211545   .g 109 to 386 139 to 416       278/307
(90 %)
6 diff
(98.1 %id)
TI_1948211817   .g 109 to 316 143 to 350       208/236
(88 %)
6 diff
(97.5 %id)
TI_1948211261   .g 145 to 908 897 to 123       773/1181
(65 %)
23 diff
(98.1 %id)
TI_154004709   .g 145 to 809 762 to 104       655/1070
(61 %)
17 diff
(98.5 %id)
BP431314   .g 162 to 469 1 to 308       308/308
(100 %)
5 diff
(98.4 %id)
H96821 melanocyte .g 184 to 544 1 to 375       375/403
(93 %)
16 diff
(96.1 %id)
BU194500 melanotic melanoma, cell line, skin .g 227 to 1103 1 to 879   AAA   879/879
(100 %)
19 diff
(97.9 %id)
BU196507 melanotic melanoma, cell line, skin .g 227 to 1074 1 to 861       861/898
(95 %)
27 diff
(97.0 %id)
BU157684 melanotic melanoma, cell line, skin .g 227 to 1045 1 to 834       834/948
(87 %)
22 diff
(97.7 %id)
BU838855 melanotic melanoma, cell line, skin .g 227 to 1038 1 to 825       825/929
(88 %)
29 diff
(96.9 %id)
BU163272 melanotic melanoma, cell line, skin .g 227 to 1054 1 to 829       829/947
(87 %)
13 diff
(98.7 %id)
BQ677191 melanotic melanoma, cell line, skin .g 227 to 1080 1 to 875       875/951
(92 %)
32 diff
(96.7 %id)
CN363444 embryonic stem cells, DMSO-treated H9 cellline .g 288 to 957 1 to 671       671/671
(100 %)
2 diff
(99.8 %id)
TI_149311146   .g 294 to 1056 833 to 78   AAA   756/937
(80 %)
11 diff
(98.9 %id)
BU622983 cell lines, Chondrosarcoma .g 305 to 1056 772 to 19   AAA   754/754
(100 %)
3 diff
(99.7 %id)
BE744651 adenocarcinoma cell line, ovary .g 306 to 1050 1 to 740       740/822
(90 %)
8 diff
(99.1 %id)
BU689207 lung .g 321 to 1056 751 to 19   AAA   733/733
(100 %)
7 diff
(99.1 %id)
BF979231 melanotic melanoma, high MDR, skin .g 328 to 991 1 to 650       650/850
(76 %)
14 diff
(98.4 %id)
BQ431688 melanotic melanoma, skin .g 378 to 1056 1 to 679   AAA   679/679
(100 %)
0 diff
(100 %id)
BM676067 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .g 384 to 1056 691 to 19   AAA   673/673
(100 %)
2 diff
(99.8 %id)
BU623590 cell lines, Enchondroma .g 391 to 1056 684 to 19   AAA   666/670
(99 %)
2 diff
(99.8 %id)
T47444 placenta .g 406 to 737 1 to 340   fully sequenced,   340/340
(100 %)
9 diff
(97.4 %id)
AI279547 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 424 to 1058 635 to 1       635/635
(100 %)
0 diff
(100 %id)
BM705775 eye, lens .g 430 to 723 1 to 294   fully sequenced,   294/294
(100 %)
0 diff
(100 %id)
CA309649 Alveolar Macrophage, lung .g 455 to 1056 625 to 24   AAA   602/602
(100 %)
0 diff
(100 %id)
BF111612 pooled .g 483 to 1059 579 to 3   tiling clone,   577/579
(99 %)
0 diff
(100 %id)
BU533584 mixed (pool of 40 RNAs) .g 502 to 1052 1 to 551       551/828
(66 %)
2 diff
(99.8 %id)
BQ233788 epithelioid carcinoma, Pancreas .g 527 to 1056 577 to 47   AAA Submitted on the opposite strand 531/548
(96 %)
1 diff
(99.9 %id)
AI083565 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 530 to 1055 526 to 1       526/526
(100 %)
0 diff
(100 %id)
BE727892 melanotic melanoma, skin .g 544 to 1053 1 to 511       511/752
(67 %)
5 diff
(99.4 %id)
BX401543   .g 547 to 1059 1 to 514   fully sequenced,   514/514
(100 %)
1 diff
(99.9 %id)
AI804064 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 575 to 1058 483 to 1       483/483
(100 %)
1 diff
(99.8 %id)
BE349548 malignant melanoma, metastatic to lymphnode, skin .g 577 to 1057 481 to 1       481/481
(100 %)
0 diff
(100 %id)
N23315 melanocyte .g 614 to 1057 443 to 1       443/443
(100 %)
3 diff
(99.4 %id)
AW183913 pooled .g 619 to 1059 444 to 4       441/444
(99 %)
0 diff
(100 %id)
AA973053 pooled .g 620 to 1059 439 to 2       438/439
(99 %)
0 diff
(100 %id)
DB511452 testis .g 621 to 1055 1 to 438     Submitted on the opposite strand 438/438
(100 %)
11 diff
(97.5 %id)
AI288218 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 623 to 1055 433 to 1       433/433
(100 %)
1 diff
(99.8 %id)
AI440455 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .g 623 to 1058 434 to 1       434/434
(100 %)
3 diff
(99.4 %id)
N23439 melanocyte .g 637 to 1056 420 to 1       420/420
(100 %)
4 diff
(99.1 %id)
DB514756 testis .g 640 to 1053 1 to 415     Submitted on the opposite strand 415/420
(98 %)
3 diff
(99.3 %id)
AW152434 serous papillary carcinoma, high grade, 2pooled tumors, uterus .g 643 to 1056 428 to 15   AAA   414/414
(100 %)
6 diff
(98.6 %id)
AI864289 pooled .g 647 to 1059 417 to 7       411/417
(98 %)
0 diff
(100 %id)
AI300175 2 pooled tumors (clear cell type), Kidney .g 652 to 1056 415 to 11   AAA   405/405
(100 %)
0 diff
(100 %id)
BU599707 mixed (pool of 40 RNAs) .g 653 to 1059 1 to 407       407/442
(92 %)
2 diff
(99.6 %id)
AA825339 carcinoid, lung .g 659 to 1055 395 to 1       395/395
(100 %)
2 diff
(99.5 %id)
AA765563 germinal center B cell .g 661 to 1056 406 to 12   AAA   395/395
(100 %)
3 diff
(99.3 %id)
AI083894 anaplastic oligodendroglioma, brain .g 662 to 1105 444 to 1   tiling clone,   444/444
(100 %)
0 diff
(100 %id)
BU734975 eye, lens .g 662 to 1056 413 to 19   fully sequenced, AAA   395/395
(100 %)
0 diff
(100 %id)
AI217669 pooled .g 666 to 1059 394 to 1       394/394
(100 %)
0 diff
(100 %id)
AI564974 anaplastic oligodendroglioma, brain .g 681 to 1056 376 to 1       376/376
(100 %)
1 diff
(99.8 %id)
BP397114 pancreatic islet .g 691 to 1058 1 to 368     Submitted on the opposite strand 368/368
(100 %)
0 diff
(100 %id)
AW592983 pooled .g 693 to 1057 366 to 1       366/366
(100 %)
7 diff
(98.1 %id)
AW953536   .g 697 to 1055 360 to 1     Submitted on the opposite strand 360/504
(71 %)
8 diff
(98.5 %id)
AI147554 Kidney .g 705 to 1056 377 to 26   AAA   352/352
(100 %)
12 diff
(96.6 %id)
T47445 placenta .g 707 to 1041 340 to 7   fully sequenced,   334/340
(98 %)
3 diff
(99.2 %id)
AA235303.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 710 to 1057 348 to 1     also hits gene DNAL1 348/348
(100 %)
0 diff
(100 %id)
AA311785   .g 712 to 1056 345 to 1     Submitted on the opposite strand 345/348
(99 %)
0 diff
(100 %id)
BQ184131 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .g 715 to 1056 362 to 19   AAA   344/344
(100 %)
7 diff
(98.0 %id)
AA738131 pooled germ cell tumors .g 720 to 1058 338 to 1       338/338
(100 %)
1 diff
(99.8 %id)
AI937674 anaplastic oligodendroglioma, brain .g 722 to 1013 292 to 1       292/292
(100 %)
4 diff
(98.7 %id)
TI_151809392   .g 724 to 1056 79 to 411   AAA   333/333
(100 %)
0 diff
(100 %id)
AA573442 colon .g 731 to 1057 328 to 4       325/328
(99 %)
0 diff
(100 %id)
AI560760 anaplastic oligodendroglioma, brain .g 734 to 1057 324 to 1       324/324
(100 %)
0 diff
(100 %id)
AV740759 cord Blood .g 738 to 1058 49 to 364   AAA   316/364
(86 %)
8 diff
(97.9 %id)
BQ002298 Chondrosarcoma, Left Pelvis .g 739 to 1056 338 to 19   AAA   320/320
(100 %)
2 diff
(99.4 %id)
AA993026   .g 741 to 1059 323 to 5       319/323
(98 %)
0 diff
(100 %id)
AA740441 2 pooled tumors (clear cell type), Kidney .g 743 to 1059 318 to 2       317/318
(99 %)
10 diff
(96.9 %id)
CB048756 Prostate .g 784 to 1056 10 to 282   fully sequenced, AAA   273/282
(96 %)
6 diff
(97.9 %id)
BX401542   .g 792 to 1021 230 to 1   fully sequenced,   230/230
(100 %)
0 diff
(100 %id)
AA573498 colon .g 807 to 1059 259 to 5       255/259
(98 %)
0 diff
(100 %id)
AA766413 germinal center B cell .g 823 to 1056 246 to 12   AAA   235/238
(98 %)
4 diff
(98.4 %id)
AI219090 placenta .g 827 to 1059 237 to 5       233/237
(98 %)
0 diff
(100 %id)
AA193600.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 851 to 1057 205 to 1     also hits gene MYST1 205/207
(99 %)
2 diff
(99.1 %id)
AA809694 colon .g 855 to 1059 209 to 6       204/209
(97 %)
0 diff
(100 %id)
CB048755 Prostate .g 925 to 1056 170 to 37   fully sequenced, AAA   134/134
(100 %)
2 diff
(98.6 %id)
C01339   .g 973 to 1056 1 to 84       84/84
(100 %)
0 diff
(100 %id)
T06311   .g 1081 to 1299 1 to 219   tiling clone,   219/219
(100 %)
1 diff
(99.6 %id)
DA522019 brain .h 1 to 568 2 to 569   tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
AW978595   .h 202 to 915 1 to 714   tiling clone,   714/715
(99 %)
9 diff
(98.8 %id)
CA453353 mixed (pool of 40 RNAs) .h 476 to 825 1 to 354       354/768
(46 %)
7 diff
(99.1 %id)
BU945239 mixed (pool of 40 RNAs) .h 476 to 1302 1 to 830 R209S C210A F211L A212R G213D ... tiling clone,   830/838
(99 %)
21 diff
(97.5 %id)
BF573580 melanotic melanoma, high MDR, skin .h 478 to 1116 1 to 636       636/636
(100 %)
9 diff
(98.6 %id)
AA234876.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h 480 to 860 1 to 381     also hits gene stawfleeby 381/381
(100 %)
3 diff
(99.3 %id)
AY542308   .i 1 to 826 1 to 826 exact tiling clone,   826/826
(100 %)
1 diff
(99.9 %id)
BG030474 breast, mammary adenocarcinoma, cell line .j 1 to 730 1 to 728 V50G M51D M52D Y53V R54S ... tiling clone,   728/962
(75 %)
20 diff
(98.0 %id)
DB222955 trachea .k 1 to 480 8 to 499   tiling clone, capped   498/498
(100 %)
6 diff
(98.8 %id)
BF184326 bone marrow, from chronic myelogenous leukemia .k 1 to 673 3 to 670       670/765
(87 %)
15 diff
(98.1 %id)
BI523558 brain .k 9 to 932 32 to 948 L161P L162A T163D H164S L165I ... tiling clone,   917/974
(94 %)
29 diff
(97.1 %id)
TI_44185584   .k 9 to 932 32 to 948 L161P L162A T163D H164S L165I ...     917/974
(94 %)
29 diff
(97.1 %id)
TI_57243949   .k 12 to 786 27 to 798       772/798
(96 %)
13 diff
(98.4 %id)
BI917827 brain .k 16 to 786 1 to 768   tiling clone,   768/768
(100 %)
12 diff
(98.5 %id)
CR614229 Neuroblastoma Cot 25-normalized .l 1 to 1139 1 to 1139 exact tiling clone,   1139/1139
(100 %)
0 diff
(100 %id)
CR626678 Neuroblastoma Cot 10-normalized .m 1 to 1215 1 to 1215 exact tiling clone,   1215/1215
(100 %)
0 diff
(100 %id)
T83136 liver and spleen .m 247 to 556 1 to 315       315/321
(98 %)
7 diff
(97.9 %id)
CR607687 B cells (Ramos cell line) Cot 25-normalized .m 725 to 1241 1 to 518   tiling clone,   518/518
(100 %)
1 diff
(99.9 %id)
T90472 liver and spleen .m 866 to 1238 383 to 5       377/464
(81 %)
11 diff
(97.7 %id)
BG531874 embryonal carcinoma, testis .n 1 to 697 1 to 688 F97L V98L S99V D100M A101P ... tiling clone,   688/898
(76 %)
21 diff
(97.7 %id)
TI_57241675   .o 1 to 896 36 to 923   tiling clone,   893/925
(96 %)
24 diff
(97.5 %id)
BI914228 brain .o 4 to 896 1 to 885   tiling clone,   885/887
(99 %)
19 diff
(97.9 %id)
BG534375 lung .p 1 to 748 6 to 764 M84H Y85V Q86S L87A E88G ... tiling clone,   764/766
(99 %)
18 diff
(97.7 %id)
DA169008 amygdala .q 1 to 577 2 to 578   tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
BI912590 leukocyte .q 4 to 805 1 to 803       803/803
(100 %)
9 diff
(98.9 %id)
TI_57247494   .q 4 to 805 1 to 803       803/803
(100 %)
9 diff
(98.9 %id)
DA150871 amygdala .q 19 to 588 2 to 573   capped   572/572
(100 %)
3 diff
(99.5 %id)
H11688 whole brain .q 47 to 554 1 to 513       513/513
(100 %)
14 diff
(97.3 %id)
DB203212 trachea .q 325 to 894 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BQ217729 melanotic melanoma, skin .q 577 to 1212 1 to 643   tiling clone,   643/877
(73 %)
12 diff
(98.7 %id)
CR616365 B cells (Ramos cell line) Cot 25-normalized .r 1 to 1649 1 to 1649 exact tiling clone,   1649/1649
(100 %)
0 diff
(100 %id)
BX385463   .r 1 to 828 1 to 811 exact fully sequenced,   811/811
(100 %)
1 diff
(99.9 %id)
BE383900 melanotic melanoma, skin .r 5 to 735 1 to 735       735/908
(80 %)
13 diff
(98.6 %id)
CA433746 mixed .r 435 to 850 434 to 19   AAA   416/416
(100 %)
1 diff
(99.8 %id)
BX385462   .r 798 to 1649 850 to 1   fully sequenced,   850/850
(100 %)
0 diff
(100 %id)
AA814753 germinal center B cell .s 1 to 378 74 to 453   tiling clone, Submitted on the opposite strand 380/453
(83 %)
6 diff
(98.7 %id)
BE891596 melanotic melanoma, skin .s 279 to 1068 1 to 787 N136I T137P K138S Y139T R140G ... tiling clone,   787/1041
(75 %)
27 diff
(97.5 %id)
AK296391 thalamus .t 1 to 1537 8 to 1544 exact tiling clone,   1544/1544
(100 %)
4 diff
(99.8 %id)
BG504676 embryonal carcinoma, testis .u 1 to 683 9 to 691   tiling clone,   683/702
(97 %)
14 diff
(98.1 %id)
CB992104 placenta, pre-eclamptic placenta .u 12 to 495 28 to 515       488/857
(56 %)
16 diff
(98.2 %id)
DB446328 testis .u 126 to 570 1 to 443   tiling clone,   443/443
(100 %)
7 diff
(98.5 %id)
CB157500 Liver .u 577 to 1187 616 to 6   tiling clone, Submitted on the opposite strand 611/616
(99 %)
0 diff
(100 %id)
CB164751 Liver .u 628 to 1187 565 to 6     Submitted on the opposite strand 560/565
(99 %)
0 diff
(100 %id)
AL833474 cervix .va 1 to 2591 9 to 2599 exact tiling clone, available from DKFZ, AAA   2599/2599
(100 %)
3 diff
(99.9 %id)
AK091836 lung .vb 1 to 2304 2 to 2303 R3K L10R tiling clone, available from FLJ,   2303/2303
(100 %)
14 diff
(99.4 %id)
AX747210   .vb 1 to 2304 2 to 2303 R3K L10R     2303/2303
(100 %)
14 diff
(99.4 %id)
DA586251 lung .vb 1 to 595 2 to 595   capped   594/594
(100 %)
3 diff
(99.5 %id)
Z46095 brain, total brain .vb 916 to 1236 1 to 320       320/320
(100 %)
4 diff
(98.8 %id)
BM702949 eye, Retina Foveal and Macular .vb 1054 to 1551 1 to 498   tiling clone, fully sequenced,   498/498
(100 %)
5 diff
(99.0 %id)
BM694564 eye, RPE and Choroid .vb 1150 to 1682 1 to 532   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (36/36 A in genome downstream of last aligned base) 532/532
(100 %)
5 diff
(99.1 %id)
BU729869 eye, Retina Foveal and Macular .vb 1350 to 1558 235 to 27   fully sequenced,   209/235
(88 %)
7 diff
(97.1 %id)
BU731167 eye, RPE and Choroid .vb 1399 to 1682 296 to 14   fully sequenced, AAA Possibly primed on the genome, locally A rich (36/36 A in genome downstream of last aligned base) 283/283
(100 %)
2 diff
(99.3 %id)
CV575368 cornea, eye .vb 1505 to 2125 620 to 1   tiling clone, Submitted on the opposite strand 620/620
(100 %)
4 diff
(99.4 %id)
FN126025 breast carcinoma .vb 1567 to 1635 67 to 1     Submitted on the opposite strand 67/67
(100 %)
2 diff
(97.1 %id)
AW839624 leiomios .vb 1600 to 1783 1 to 183       183/183
(100 %)
1 diff
(99.5 %id)
BQ441410 testis .vb 1669 to 2469 1 to 805   tiling clone,   805/805
(100 %)
17 diff
(97.9 %id)
DB319421 lung .vb 1773 to 2304 534 to 1       534/534
(100 %)
6 diff
(98.9 %id)
Z40912 brain, total brain .vb 1896 to 2139 244 to 1       244/244
(100 %)
2 diff
(99.2 %id)
DA170033 amygdala .vc 1 to 547 8 to 554 exact tiling clone, capped   553/553
(100 %)
1 diff
(99.9 %id)
DB079098 testis .vd 1 to 538 2 to 551 exact tiling clone, capped   550/550
(100 %)
7 diff
(98.8 %id)
AA371301 Prostate .ve 1 to 340 1 to 339 V23X T29X Q53H Y54T L55* tiling clone,   339/340
(99 %)
2 diff
(99.5 %id)
DB353031 uterus .vf 1 to 188 1 to 188   tiling clone, Submitted on the opposite strand 188/188
(100 %)
5 diff
(97.4 %id)
BF361859 nervous_normal .vf 95 to 259 174 to 11       164/174
(94 %)
0 diff
(100 %id)
CV570560 cornea, eye .vf 115 to 722 1 to 608   tiling clone,   608/608
(100 %)
3 diff
(99.6 %id)
BX641137 human uterus .vf 470 to 5760 1 to 5284 I61Y Y62V L63S C64I F65A ... tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 5284/5285
(99 %)
15 diff
(99.8 %id)
BM681790 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vf 2665 to 3201 550 to 21   tiling clone,   530/573
(92 %)
0 diff
(100 %id)
CK299141 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vf 2665 to 3201 550 to 21       530/573
(92 %)
0 diff
(100 %id)
BQ189336 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vf 2665 to 3201 15 to 544   fully sequenced,   530/544
(97 %)
9 diff
(98.4 %id)
TI_151809246   .vf 2665 to 3201 87 to 616   fully sequenced,   530/544
(97 %)
13 diff
(97.7 %id)
TI_151731615   .vf 2665 to 3201 614 to 85       530/1029
(51 %)
0 diff
(100 %id)
CK299477 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vf 2704 to 3207 511 to 15   fully sequenced,   497/511
(97 %)
8 diff
(98.5 %id)
TI_151729861   .vf 2704 to 3207 576 to 80   fully sequenced,   497/576
(86 %)
8 diff
(98.7 %id)
BM564275 blood, natural killer cells, cell line .vf 4019 to 4708 1 to 693       693/1177
(58 %)
9 diff
(99.3 %id)
BE143939 head_neck .vf 4125 to 4229 113 to 9     Submitted on the opposite strand 105/117
(89 %)
4 diff
(96.6 %id)
BE143993 head_neck .vf 4125 to 4229 113 to 9     Submitted on the opposite strand 105/117
(89 %)
4 diff
(96.6 %id)
H77400 liver and spleen .vf 4163 to 4568 1 to 420       420/422
(99 %)
18 diff
(95.8 %id)
TI_149278224   .vf 4275 to 4964 782 to 94   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 689/690
(99 %)
14 diff
(98.0 %id)
BU678317 lung .vf 4348 to 4964 636 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 618/618
(100 %)
6 diff
(99.1 %id)
H77401 liver and spleen .vf 4591 to 4967 392 to 6   tiling clone,   387/394
(98 %)
0 diff
(100 %id)
CN277670 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .vf 5264 to 5785 547 to 26   tiling clone, Submitted on the opposite strand 522/547
(95 %)
0 diff
(100 %id)
DB125314 thymus .vg-u 1 to 571 2 to 573   tiling clone, capped   572/572
(100 %)
10 diff
(98.3 %id)
DB344245 thymus .vg-u 1342 to 1799 457 to 1   tiling clone,   457/461
(99 %)
4 diff
(99.2 %id)
DA570017 whole embryo, mainly head .vg-u 1427 to 2247 2 to 823   tiling clone, to resequence, capped   822/822
(100 %)
6 diff
(99.3 %id)
AI276545 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vg-u 1427 to 1821 395 to 1   tiling clone,   395/395
(100 %)
0 diff
(100 %id)
AA829966 germinal center B cell .vg-u 1431 to 1821 399 to 9       391/399
(97 %)
0 diff
(100 %id)
GD136622   .vg-u 1440 to 1764 1 to 325   AAA Possibly primed on the genome, locally A rich (20/20 A in genome downstream of last aligned base) 325/325
(100 %)
2 diff
(99.4 %id)
BF945035 nervous_normal .vg-u 1497 to 1784 1 to 289       289/289
(100 %)
3 diff
(99.0 %id)
CU453039 epidermis .vg-u 1513 to 1904 12 to 403       392/404
(97 %)
6 diff
(98.6 %id)
BF092222 testis_normal .vg-u 1558 to 1757 12 to 210       199/210
(94 %)
6 diff
(97.2 %id)
FN053235 breast carcinoma .vg-u 1616 to 1729 1 to 114       114/114
(100 %)
1 diff
(99.2 %id)
BF224045 carcinoid, lung .vg-u 1673 to 2254 581 to 1   tiling clone,   581/581
(100 %)
2 diff
(99.7 %id)
N45059 melanocyte .vg-u 1713 to 1930 1 to 218       218/218
(100 %)
1 diff
(99.6 %id)
BE349064 malignant melanoma, metastatic to lymphnode, skin .vg-u 1729 to 2252 524 to 1       524/524
(100 %)
3 diff
(99.5 %id)
TI_154118888   .vg-u 2319 to 3011 781 to 88 exact tiling clone, AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 694/1002
(69 %)
5 diff
(99.6 %id)
TI_154000823   .vg-u 2512 to 3011 588 to 89 P33X AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 500/501
(99 %)
0 diff
(100 %id)
BM546677 brain, hippocampus .vg-u 2527 to 3011 20 to 506   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 487/506
(96 %)
6 diff
(98.9 %id)
CA432956 mixed .vg-u 2532 to 3028 497 to 1   tiling clone,   497/497
(100 %)
0 diff
(100 %id)
N29127 melanocyte .vg-u 2574 to 3009 1 to 434       434/434
(100 %)
7 diff
(98.4 %id)
AA579258   .vg-u 2650 to 3016 1 to 366       366/366
(100 %)
10 diff
(97.3 %id)
CD710261 normal nasopharynx .vg-u 2729 to 3242 9 to 525   tiling clone,   517/525
(98 %)
6 diff
(98.9 %id)
AA180240 muscle, skeletal muscle .vg-u 3059 to 3277 1 to 220   tiling clone,   220/220
(100 %)
3 diff
(98.7 %id)
AA178951.
matches multiple genes
muscle, skeletal muscle .vg-u 3124 to 3660 531 to 1     also hits gene MYOT 531/531
(100 %)
13 diff
(97.6 %id)
AF086536   .vg-u 3211 to 3684 1 to 472   tiling clone, AAA Possibly primed on the genome, locally A rich (36/36 A in genome downstream of last aligned base) 472/472
(100 %)
6 diff
(98.8 %id)
W95952 heart .vg-u 3211 to 3683 1 to 475       475/484
(98 %)
12 diff
(97.6 %id)
AI884790 anaplastic oligodendroglioma, brain .vg-u 3226 to 3687 460 to 1       460/460
(100 %)
8 diff
(98.3 %id)
W95866 heart .vg-u 3233 to 3686 457 to 1       457/460
(99 %)
11 diff
(97.7 %id)
AI140007 heart .vg-u 3237 to 3687 449 to 1       449/449
(100 %)
6 diff
(98.7 %id)
AA767690 germinal center B cell .vg-u 3261 to 3707 447 to 1   tiling clone,   447/447
(100 %)
8 diff
(98.3 %id)
DB356751 whole embryo, mainly head .vg-u 3341 to 3684 344 to 1   tiling clone, to resequence,   344/344
(100 %)
1 diff
(99.8 %id)
AI964030 pooled germ cell tumors .vg-u 3418 to 3698 281 to 1       281/281
(100 %)
4 diff
(98.6 %id)
N34621 melanocyte .vh-u 1 to 253 1 to 255   tiling clone, fully sequenced,   255/255
(100 %)
4 diff
(98.5 %id)
H91404 liver and spleen .vh-u 65 to 215 1 to 151       151/156
(96 %)
1 diff
(99.4 %id)
AI760078 Kidney .vh-u 206 to 678 478 to 6       473/478
(98 %)
0 diff
(100 %id)
AK024681   .vh-u 214 to 2541 1 to 2322 V78M tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (36/36 A in genome downstream of last aligned base) 2322/2322
(100 %)
12 diff
(99.5 %id)
N26734 melanocyte .vh-u 232 to 677 448 to 1   fully sequenced,   448/448
(100 %)
3 diff
(99.4 %id)
BP397369 pancreatic islet .vh-u 251 to 662 413 to 1       413/413
(100 %)
1 diff
(99.8 %id)
AA912619 pooled .vh-u 253 to 677 425 to 1       425/425
(100 %)
0 diff
(100 %id)
AA947677 pooled .vh-u 276 to 677 402 to 1       402/402
(100 %)
0 diff
(100 %id)
H91308 liver and spleen .vh-u 755 to 990 238 to 1   tiling clone,   238/249
(95 %)
4 diff
(98.4 %id)
BX089972 liver and spleen .vi 1 to 680 1 to 680 exact tiling clone, AAA Possibly primed on the genome, locally A rich (36/36 A in genome downstream of last aligned base) 680/680
(100 %)
3 diff
(99.6 %id)
R99425 liver and spleen .vi 2 to 381 1 to 388 S51X fully sequenced,   388/388
(100 %)
12 diff
(97.0 %id)
H67504 liver and spleen .vi 2 to 335 1 to 339   tiling clone, fully sequenced,   339/339
(100 %)
6 diff
(98.3 %id)
BF197298 Kidney .vi 266 to 587 323 to 2       322/328
(98 %)
0 diff
(100 %id)
AA810810 germinal center B cell .vi 279 to 585 340 to 35   AAA Possibly primed on the genome, locally A rich (36/36 A in genome downstream of last aligned base) 306/306
(100 %)
4 diff
(98.7 %id)
AA749380 germinal center B cell .vi 300 to 585 320 to 35   AAA Possibly primed on the genome, locally A rich (36/36 A in genome downstream of last aligned base) 286/286
(100 %)
1 diff
(99.7 %id)
H67505 liver and spleen .vi 312 to 652 345 to 1   fully sequenced,   345/345
(100 %)
13 diff
(96.3 %id)
R99333 liver and spleen .vi 351 to 652 308 to 1   fully sequenced,   308/308
(100 %)
4 diff
(98.8 %id)
BE716223 head_neck .vi 483 to 676 11 to 213       203/218
(93 %)
15 diff
(93.2 %id)
DA986007 synovial membrane tissue from rheumatioidarthritis .vj 1 to 552 2 to 553 exact tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
BE148636 head_neck .vk-u -10 to 333 1 to 343 R3K L10R S31P tiling clone,   343/345
(99 %)
10 diff
(97.2 %id)
CF528834 placenta .vl-u 1 to 277 294 to 18 exact tiling clone, AAA   277/277
(100 %)
1 diff
(99.7 %id)
DB302908 amygdala Gene TBC1D7, variant not shown         This clone was ignored    
DA180564 amygdala Gene TBC1D7, variant not shown       capped This clone was ignored    
BE047726 brain, tumor, 5 pooled (see description) Gene TBC1D7, variant not shown         This clone was ignored    
AI863480 brain, tumor, 5 pooled (see description) Gene TBC1D7, variant not shown         This clone was ignored    
DB158263 thymus Gene TBC1D7, variant not shown       capped This clone was ignored    
DB346659 thymus Gene TBC1D7, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve, .vf, .vg-u, .vh-u, .vi, .vj, .vk-u, .vl-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI