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Gene TBC1D15TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
506 supporting clones for gene TBC1D15 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_022771.4   .a 1 to 5794 1 to 5794 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 5794/5794
(100 %)
0 diff
(100 %id)
BC028352 testis .a 53 to 3262 1 to 3210   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 3210/3212
(99 %)
2 diff
(100.0 %id)
TI_1948095670   .a 69 to 981 129 to 1046       918/1225
(74 %)
30 diff
(97.6 %id)
TI_1948095982   .a 69 to 787 122 to 842       721/1236
(58 %)
15 diff
(98.8 %id)
TI_1948095828   .a 75 to 787 120 to 839       720/1354
(53 %)
17 diff
(98.8 %id)
TI_1948095671   .a 1294 to 2154 978 to 119       860/1193
(72 %)
18 diff
(98.5 %id)
TI_1948095829   .a 1415 to 2154 894 to 153       742/1326
(55 %)
22 diff
(98.4 %id)
TI_1948095983   .a 1415 to 2163 853 to 98       756/1257
(60 %)
20 diff
(98.5 %id)
NM_001146213.1   .b 1 to 5743 1 to 5743 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 5743/5743
(100 %)
0 diff
(100 %id)
DA447680 tongue, tumor tissue .b 13 to 571 2 to 560   tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
DA780111 brain .b 38 to 607 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA061157 cerebellum .b 39 to 600 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA951569 Spleen .b 39 to 608 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
DA392424 thalamus .b 45 to 629 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
DA903907   .b 46 to 598 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BG721457 testis .b 48 to 727 1 to 687       687/715
(96 %)
21 diff
(97.1 %id)
DA043692 bladder .b 49 to 609 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA391249 thalamus .b 49 to 594 39 to 584   capped   546/583
(93 %)
6 diff
(99.0 %id)
DA997802   .b 50 to 609 2 to 562   capped   561/561
(100 %)
4 diff
(99.3 %id)
DA095400 cerebellum .b 51 to 585 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DB048707 testis .b 51 to 643 2 to 596   capped   595/595
(100 %)
2 diff
(99.7 %id)
DB058372 testis .b 51 to 578 2 to 530   capped   529/529
(100 %)
1 diff
(99.9 %id)
DB108116 thymus .b 51 to 620 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
DB279038 uterus .b 51 to 601 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
BU561079 testis .b 52 to 619 1 to 569       569/736
(77 %)
10 diff
(98.7 %id)
DA018576   .b 53 to 612 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
AK022147 whole embryo, mainly body .b 53 to 2541 1 to 2489   tiling clone, available from FLJ,   2489/2489
(100 %)
3 diff
(99.9 %id)
BP200322 amygdala .b 53 to 629 1 to 577       577/582
(99 %)
2 diff
(99.7 %id)
BP229934 brain .b 53 to 629 1 to 576       576/583
(98 %)
3 diff
(99.5 %id)
DA537590 Kidney .b 53 to 597 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DB448916 testis .b 53 to 491 1 to 440       438/440
(99 %)
4 diff
(99.1 %id)
DB492407 hypothalamus .b 53 to 523 1 to 473       473/473
(100 %)
7 diff
(98.6 %id)
DA544807   .b 53 to 611 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA559739 heart .b 53 to 607 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BP274796 Kidney .b 53 to 637 1 to 585       585/585
(100 %)
2 diff
(99.7 %id)
DA776044 brain .b 53 to 635 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
BM786479 Ascites, stomach .b 53 to 629 1 to 576       576/581
(99 %)
2 diff
(99.7 %id)
BM839141 Ascites, stomach .b 53 to 484 1 to 432       432/432
(100 %)
1 diff
(99.8 %id)
BM834927 stomach .b 53 to 559 1 to 507       507/507
(100 %)
0 diff
(100 %id)
DB060383 testis .b 53 to 586 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
DA023504   .b 54 to 626 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA026529   .b 54 to 629 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
DA027392   .b 54 to 628 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA052675   .b 54 to 607 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA053104   .b 54 to 640 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA055620 cerebellum .b 54 to 598 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
DA063146 cerebellum .b 54 to 625 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA069376 cerebellum .b 54 to 635 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA110103 cerebellum .b 54 to 590 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
DA122353 cerebellum .b 54 to 610 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DA157739 amygdala .b 54 to 631 2 to 579   capped   578/585
(98 %)
2 diff
(99.7 %id)
DA157875 amygdala .b 54 to 622 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DA160010 amygdala .b 54 to 623 2 to 572   capped   571/580
(98 %)
2 diff
(99.7 %id)
DA272040 caudate nucleus .b 54 to 696 2 to 645   capped   644/644
(100 %)
3 diff
(99.6 %id)
DA292792 hippocampus .b 54 to 613 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA300447 hippocampus .b 54 to 638 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
DA366438 subthalamic nucleus .b 54 to 608 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DA366902 subthalamic nucleus .b 54 to 597 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA411025 thalamus .b 54 to 615 2 to 565   capped   564/564
(100 %)
4 diff
(99.3 %id)
DA420511 cervix .b 54 to 612 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA422226 cervix .b 54 to 605 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA441439 tongue, tumor tissue .b 54 to 633 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA444400 tongue, tumor tissue .b 54 to 642 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA449746 tongue, tumor tissue .b 54 to 625 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA458344 tongue, tumor tissue .b 54 to 619 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA475251   .b 54 to 595 2 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
DA522367 brain .b 54 to 620 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA547126   .b 54 to 619 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA553002   .b 54 to 611 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
AU121285 whole embryo, mainly body .b 54 to 866 2 to 810   capped   809/809
(100 %)
8 diff
(99.1 %id)
DA575208   .b 54 to 623 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA582885 lung .b 54 to 633 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA587876 lung .b 54 to 635 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA594974 lung .b 54 to 620 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA649339   .b 54 to 584 2 to 534   capped   533/533
(100 %)
3 diff
(99.5 %id)
DA694212   .b 54 to 629 2 to 578   capped   577/580
(99 %)
3 diff
(99.5 %id)
DA695822   .b 54 to 626 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA696966   .b 54 to 620 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA709888   .b 54 to 606 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DA712987   .b 54 to 599 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
DA729357   .b 54 to 927 2 to 858   capped   857/860
(99 %)
25 diff
(97.1 %id)
AU133108   .b 54 to 912 2 to 862   capped   861/861
(100 %)
6 diff
(99.4 %id)
DA744890   .b 54 to 628 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA748787   .b 54 to 625 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA752037   .b 54 to 624 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA754788   .b 54 to 610 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DA766882 tongue .b 54 to 624 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA771959 brain .b 54 to 632 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA774188 brain .b 54 to 633 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA814582   .b 54 to 627 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
DA818489   .b 54 to 603 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
AU138693 placenta .b 54 to 684 2 to 634   capped   633/641
(98 %)
3 diff
(99.6 %id)
DA856840 placenta .b 54 to 613 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA867581 Prostate .b 54 to 579 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
DA868418 Prostate .b 54 to 629 2 to 576   capped   575/581
(98 %)
4 diff
(99.4 %id)
DA872025 Prostate .b 54 to 584 2 to 533   capped   532/532
(100 %)
2 diff
(99.7 %id)
DA879401 Prostate .b 54 to 634 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA922106 small intestine .b 54 to 614 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA939590 Spleen .b 54 to 647 2 to 596   capped   595/595
(100 %)
2 diff
(99.7 %id)
DA943634 Spleen .b 54 to 626 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA957655 Spleen .b 54 to 617 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA991702 synovial membrane tissue from rheumatioidarthritis .b 54 to 594 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DA997159   .b 54 to 624 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DB005159 breast, tumor tissue .b 54 to 613 2 to 564   capped   563/563
(100 %)
4 diff
(99.3 %id)
DN993386 brain, whole brain .b 54 to 712 1 to 658       658/658
(100 %)
4 diff
(99.4 %id)
DB013850 esophageal, tumor tissue .b 54 to 615 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DB014663 esophageal, tumor tissue .b 54 to 631 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DB020774 testis .b 54 to 601 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DB033184 testis .b 54 to 626 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DB037413 testis .b 54 to 618 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB038657 testis .b 54 to 636 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB040469 testis .b 54 to 613 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DB042720 testis .b 54 to 622 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB044740 testis .b 54 to 590 2 to 541   capped   540/540
(100 %)
3 diff
(99.5 %id)
DB047150 testis .b 54 to 615 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DB049177 testis .b 54 to 607 2 to 556   capped   555/563
(98 %)
2 diff
(99.7 %id)
DB054902 testis .b 54 to 622 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB058375 testis .b 54 to 576 2 to 524   capped   523/523
(100 %)
0 diff
(100 %id)
DB060191 testis .b 54 to 601 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DB076986 testis .b 54 to 601 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB081295 testis .b 54 to 433 2 to 381   capped   380/380
(100 %)
0 diff
(100 %id)
DB090176 testis .b 54 to 598 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DB094274 testis .b 54 to 623 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DB108816 thymus .b 54 to 632 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DB110468 thymus .b 54 to 622 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB112852 thymus .b 54 to 629 2 to 577   capped   576/577
(99 %)
3 diff
(99.5 %id)
DB124675 thymus .b 54 to 603 2 to 552   capped   551/552
(99 %)
2 diff
(99.7 %id)
DB132047 thymus .b 54 to 605 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB136371 thymus .b 54 to 550 2 to 500   capped   499/499
(100 %)
2 diff
(99.6 %id)
DB139811 thymus .b 54 to 586 2 to 537   capped   536/536
(100 %)
3 diff
(99.5 %id)
DB157203 thymus .b 54 to 634 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
DB161832 thymus .b 54 to 550 2 to 499   capped   498/498
(100 %)
1 diff
(99.8 %id)
DB163827 thymus .b 54 to 632 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DB168804 kidney, tumor tissue .b 54 to 643 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DB174695 kidney, tumor tissue .b 54 to 533 2 to 482   capped   481/481
(100 %)
3 diff
(99.4 %id)
DB204487 trachea .b 54 to 618 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DB204789 trachea .b 54 to 548 2 to 496   capped   495/495
(100 %)
0 diff
(100 %id)
DB212112 trachea .b 54 to 577 2 to 527   capped   526/526
(100 %)
2 diff
(99.7 %id)
DB213807 trachea .b 54 to 592 2 to 541   capped   540/540
(100 %)
2 diff
(99.7 %id)
DB224281 trachea .b 54 to 607 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DB225401 trachea .b 54 to 606 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DB262718 uterus .b 54 to 606 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DB264239 uterus .b 54 to 613 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB271442 uterus .b 54 to 598 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DB273841 uterus .b 54 to 622 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DB282835 uterus .b 54 to 597 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB292344 uterus .b 54 to 633 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
AK225747 testis .b 55 to 2260 1 to 2206   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 2206/2206
(100 %)
0 diff
(100 %id)
DA629788 Kidney .b 55 to 616 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA868643 Prostate .b 55 to 596 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DB051519 testis .b 55 to 597 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DB123632 thymus .b 55 to 515 2 to 462   capped   461/461
(100 %)
0 diff
(100 %id)
DB162538 thymus .b 55 to 515 2 to 463   capped   462/462
(100 %)
1 diff
(99.8 %id)
BP371102 testis .b 55 to 636 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP369761 testis .b 56 to 635 1 to 578       580/578
(100 %)
4 diff
(99.4 %id)
DA219800 brain .b 57 to 607 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA253047 caudate nucleus .b 57 to 642 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA341565 substantia nigra .b 57 to 619 2 to 565   capped   564/566
(99 %)
2 diff
(99.7 %id)
BU659360 blood .b 57 to 698 10 to 650       641/650
(98 %)
7 diff
(99.0 %id)
DA643694   .b 57 to 530 2 to 475   capped   474/478
(99 %)
1 diff
(99.8 %id)
DA644756   .b 57 to 638 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA662678   .b 57 to 584 2 to 529   capped   528/528
(100 %)
1 diff
(99.9 %id)
DA675391   .b 57 to 641 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DA761423 tongue .b 57 to 576 2 to 522   capped   521/521
(100 %)
1 diff
(99.9 %id)
DA777456 brain .b 57 to 548 2 to 494   capped   493/493
(100 %)
2 diff
(99.6 %id)
DB060219 testis .b 57 to 591 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
BX646888 Liver .b 58 to 456 1 to 399       399/399
(100 %)
3 diff
(99.3 %id)
AU279903   .b 59 to 631 1 to 574       574/574
(100 %)
2 diff
(99.7 %id)
DA341691 substantia nigra .b 60 to 656 2 to 599   capped   598/598
(100 %)
1 diff
(99.9 %id)
DA698696   .b 60 to 585 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
DA749433   .b 60 to 629 2 to 571   capped   570/571
(99 %)
1 diff
(99.9 %id)
DB039503 testis .b 60 to 635 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DB053370 testis .b 60 to 613 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA082375 cerebellum .b 64 to 490 2 to 428   capped   427/427
(100 %)
0 diff
(100 %id)
DA131546 alzheimer cortex .b 64 to 692 2 to 631   capped   630/630
(100 %)
2 diff
(99.7 %id)
DA270763 caudate nucleus .b 64 to 616 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA467855 cord Blood .b 64 to 633 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA616060   .b 64 to 635 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA619103   .b 64 to 615 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DB058310 testis .b 64 to 573 2 to 512   capped   511/511
(100 %)
1 diff
(99.9 %id)
DB083316 testis .b 64 to 619 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DB247070   .b 64 to 623 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB250926 uterus .b 64 to 624 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
BI768572 pooled lung and spleen .b 66 to 907 1 to 837       837/838
(99 %)
24 diff
(97.2 %id)
TI_57181067   .b 66 to 907 70 to 906       837/907
(92 %)
30 diff
(96.7 %id)
DA744831   .b 69 to 640 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA206050 brain .b 70 to 656 2 to 589   capped   588/588
(100 %)
4 diff
(99.4 %id)
DA553601   .b 70 to 627 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DA546719   .b 71 to 623 2 to 556   capped   555/559
(99 %)
6 diff
(99.0 %id)
DA606603   .b 71 to 633 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA872874 Prostate .b 71 to 633 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
AK225221 colon .b 72 to 2254 1 to 2183   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 2183/2183
(100 %)
2 diff
(100.0 %id)
BP221445 colon .b 72 to 647 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
DA573767   .b 72 to 621 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA889644   .b 72 to 627 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DB142463 thymus .b 72 to 605 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
DB204614 trachea .b 72 to 638 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA591808 lung .b 73 to 648 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA699395   .b 73 to 599 2 to 529   capped   528/528
(100 %)
1 diff
(99.9 %id)
DA817157   .b 73 to 640 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DB091005 testis .b 73 to 622 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB120878 thymus .b 73 to 641 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA504424 brain .b 74 to 629 2 to 558   capped   557/566
(98 %)
2 diff
(99.7 %id)
BM460313 eye, retinoblastoma .b 74 to 1060 1 to 994       994/1071
(92 %)
24 diff
(97.8 %id)
DA305900 hippocampus .b 75 to 639 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA610280   .b 75 to 631 8 to 564   capped   557/557
(100 %)
1 diff
(99.9 %id)
AU138165 placenta .b 75 to 822 2 to 752   capped   751/756
(99 %)
11 diff
(98.6 %id)
AB449901 brain .b 76 to 2100 1 to 2025       2025/2025
(100 %)
1 diff
(100.0 %id)
CV024264 mixed .b 76 to 712 1 to 635       635/637
(99 %)
4 diff
(99.4 %id)
DB043824 testis .b 77 to 660 2 to 587   capped   586/586
(100 %)
3 diff
(99.5 %id)
DA303809 hippocampus .b 78 to 637 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
CD359719 testis .b 79 to 893 1 to 825       825/890
(92 %)
15 diff
(98.4 %id)
DA126929 cerebellum .b 82 to 662 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
BU540713 large cell carcinoma, lung .b 87 to 980 20 to 920       899/920
(97 %)
7 diff
(99.3 %id)
BQ420873 embryonal carcinoma, cell line, testis .b 99 to 930 5 to 838       834/884
(94 %)
10 diff
(98.9 %id)
DB377765 placenta .b 1728 to 2255 533 to 1       533/550
(96 %)
17 diff
(97.0 %id)
DB378622 placenta .b 1877 to 2255 382 to 1       382/524
(72 %)
7 diff
(98.7 %id)
AU147137 whole embryo, mainly body .b 1996 to 2541 545 to 1       545/545
(100 %)
10 diff
(98.2 %id)
DB370081   .b 2719 to 3207 489 to 1   tiling clone,   489/489
(100 %)
1 diff
(99.8 %id)
NM_001146214.1   .c 1 to 5835 1 to 5835 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 5835/5835
(100 %)
0 diff
(100 %id)
AK297626 brain .c 53 to 2211 1 to 2159 E289G Q489R tiling clone,   2159/2159
(100 %)
3 diff
(99.9 %id)
DC314395 amygdala .c 53 to 609 1 to 559       559/559
(100 %)
3 diff
(99.5 %id)
DC314616 amygdala .c 53 to 614 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DC350463 brain .c 53 to 620 1 to 568       568/568
(100 %)
0 diff
(100 %id)
DC353854 brain .c 53 to 525 1 to 473   tiling clone,   473/473
(100 %)
0 diff
(100 %id)
DC399156 testis .c 53 to 455 1 to 403       403/403
(100 %)
0 diff
(100 %id)
DC411529 kidney, tumor tissue .c 53 to 462 1 to 410       410/410
(100 %)
0 diff
(100 %id)
BP225211   .c 200 to 742 39 to 582       544/582
(93 %)
10 diff
(98.3 %id)
DN990889 brain, whole brain .c 200 to 824 43 to 667       625/667
(93 %)
6 diff
(99.2 %id)
BQ005757 Chondrosarcoma, Left Pubic Bone .c 212 to 824 626 to 15   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 612/626
(97 %)
0 diff
(100 %id)
AV754392 pituitary tumor .c 227 to 578 1 to 352       352/357
(98 %)
1 diff
(99.8 %id)
DB039464 testis .c 251 to 823 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
AV753751 pituitary tumor .c 257 to 581 1 to 325       325/334
(97 %)
1 diff
(99.8 %id)
BF205687 muscle, rhabdomyosarcoma .c 300 to 1026 1 to 727       727/849
(85 %)
18 diff
(97.9 %id)
BF308777 muscle, rhabdomyosarcoma .c 300 to 1026 1 to 719       721/881
(81 %)
16 diff
(98.2 %id)
BG825192 muscle, rhabdomyosarcoma .c 300 to 870 1 to 571       571/571
(100 %)
0 diff
(100 %id)
DA434202 tongue, tumor tissue .c 309 to 837 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
AA308161 colon .c 350 to 721 8 to 379       372/390
(95 %)
9 diff
(97.7 %id)
AI247354 pooled .c 350 to 824 476 to 2       475/476
(99 %)
0 diff
(100 %id)
AA617736 breast .c 402 to 816 415 to 1       415/415
(100 %)
0 diff
(100 %id)
AU136684 placenta .c 448 to 1159 2 to 716   tiling clone, capped   715/738
(96 %)
9 diff
(98.8 %id)
AA627712 colon, colon tumor RER+ .c 468 to 821 354 to 1       354/354
(100 %)
0 diff
(100 %id)
D63191   .c 510 to 917 1 to 406       406/406
(100 %)
6 diff
(98.6 %id)
BI870872 adenocarcinoma, cell line, Liver .c 537 to 1312 1 to 776       776/776
(100 %)
6 diff
(99.3 %id)
TI_57229817   .c 537 to 1312 88 to 863       776/776
(100 %)
6 diff
(99.3 %id)
BE545160 cervical carcinoma cell line, cervix .c 574 to 1251 8 to 688       681/754
(90 %)
27 diff
(96.5 %id)
CB155597 brain .c 581 to 1171 1 to 591       591/591
(100 %)
1 diff
(99.9 %id)
DA033527   .c 586 to 1146 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
BY795976 eye .c 602 to 1220 1 to 619       619/619
(100 %)
0 diff
(100 %id)
DB375455 placenta .c 2825 to 3299 480 to 2   tiling clone,   479/480
(99 %)
0 diff
(100 %id)
DB027749 testis .d 1 to 221 2 to 224   tiling clone, to resequence, capped   223/223
(100 %)
1 diff
(99.6 %id)
DB336735 testis .d 1235 to 1798 564 to 1   tiling clone, to resequence,   564/564
(100 %)
2 diff
(99.7 %id)
DA832487 placenta .e 1 to 592 2 to 594   tiling clone, capped   593/598
(99 %)
5 diff
(99.2 %id)
AU157734 placenta .e 1617 to 2116 498 to 1   tiling clone,   498/498
(100 %)
6 diff
(98.8 %id)
NR_027449.1   .f 1 to 5532 1 to 5532 exact RefSeq, tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 5532/5532
(100 %)
0 diff
(100 %id)
DW439129 Liver .f 48 to 273 18 to 243       226/243
(93 %)
6 diff
(97.6 %id)
DB279044 uterus .f 51 to 295 2 to 247   capped   246/246
(100 %)
2 diff
(99.2 %id)
BP278313   .f 53 to 633 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA149659 amygdala .f 54 to 616 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
DA168703 amygdala .f 54 to 593 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
BG772574 testis .f 54 to 787 1 to 734       734/734
(100 %)
8 diff
(99.0 %id)
DA813936   .f 54 to 360 2 to 308   capped   307/307
(100 %)
1 diff
(99.7 %id)
DA935514 Spleen .f 54 to 268 2 to 219   capped   218/218
(100 %)
3 diff
(98.7 %id)
DB123493 thymus .f 54 to 357 2 to 305   capped   304/304
(100 %)
0 diff
(100 %id)
DB257273 uterus .f 54 to 376 2 to 324   capped   323/323
(100 %)
0 diff
(100 %id)
AL833639 human endometrium carcinoma cell line .f 62 to 2044 1 to 1983 exact available from DKFZ, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 1983/1983
(100 %)
1 diff
(100.0 %id)
AK292306 testis .f 70 to 1979 1 to 1910 exact     1910/1910
(100 %)
4 diff
(99.8 %id)
DB034536 testis .f 71 to 645 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
FN149282 breast carcinoma .f 294 to 397 1 to 101       101/108
(93 %)
3 diff
(97.3 %id)
DA996575   .f 486 to 1028 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
BM149822 leukopheresis .f 548 to 984 1 to 436       436/436
(100 %)
11 diff
(97.5 %id)
BM150361 leukopheresis .f 548 to 1047 1 to 500       500/591
(84 %)
12 diff
(98.0 %id)
BM746032 stomach .f 584 to 1038 25 to 477       453/477
(94 %)
7 diff
(98.6 %id)
BM745272 stomach .f 592 to 719 1 to 130       130/143
(90 %)
3 diff
(98.0 %id)
BM765308 stomach .f 592 to 1279 1 to 688       688/688
(100 %)
1 diff
(99.9 %id)
BM765659 stomach .f 592 to 888 1 to 297       297/297
(100 %)
0 diff
(100 %id)
BM765672 stomach .f 592 to 1162 1 to 571       571/571
(100 %)
0 diff
(100 %id)
BM766088 stomach .f 592 to 1156 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
BM771701 stomach .f 592 to 1241 1 to 650       650/650
(100 %)
3 diff
(99.6 %id)
BM753773 stomach .f 593 to 1007 1 to 416       416/416
(100 %)
2 diff
(99.6 %id)
CX166892 human embryonic stem cells differentiated toan early endodermal cell type .f 602 to 1383 1 to 782       782/782
(100 %)
2 diff
(99.8 %id)
AW672696 cervix .f 603 to 841 1 to 239     Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 239/239
(100 %)
0 diff
(100 %id)
AW855832 colon .f 607 to 719 116 to 5       112/122
(91 %)
0 diff
(100 %id)
BQ318104 colon .f 607 to 719 116 to 5       112/122
(91 %)
0 diff
(100 %id)
BG387556 embryonal carcinoma, cell line, testis .f 636 to 1348 1 to 711       711/712
(99 %)
15 diff
(97.9 %id)
BE889736 leiomyosarcoma, uterus .f 729 to 1468 13 to 753       741/863
(85 %)
24 diff
(97.3 %id)
BP276636 Kidney .f 809 to 1390 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AA100012   .f 843 to 1232 1 to 391       391/394
(99 %)
4 diff
(99.0 %id)
BQ311956 breast_normal .f 872 to 1107 247 to 16       232/249
(93 %)
3 diff
(98.8 %id)
BG251331 adenocarcinoma, cell line, Liver .f 931 to 1638 1 to 715       715/1241
(57 %)
16 diff
(98.8 %id)
TI_1948095520   .f 954 to 1892 1059 to 120       940/1189
(79 %)
17 diff
(98.6 %id)
CD631582   .f 966 to 1317 25 to 376       352/381
(92 %)
14 diff
(96.4 %id)
CD631583   .f 966 to 1317 357 to 6       352/381
(92 %)
3 diff
(99.3 %id)
BE537440 cervix .f 977 to 1746 1 to 770       770/836
(92 %)
40 diff
(95.3 %id)
CB141800 Liver .f 1051 to 1482 1 to 432       432/432
(100 %)
2 diff
(99.6 %id)
BG755799 B-cells, primary B-cells from tonsils (cell line) .f 1149 to 1969 1 to 824       824/825
(99 %)
15 diff
(98.2 %id)
AL157464 amygdala .f 1159 to 2996 1 to 1837   available from DKFZ, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 1837/1837
(100 %)
1 diff
(100.0 %id)
AA582194 germ cell tumor .f 1164 to 1511 1 to 348     Submitted on the opposite strand 348/348
(100 %)
3 diff
(99.2 %id)
BP420995 small intestine .f 1180 to 1706 1 to 532     Submitted on the opposite strand 532/532
(100 %)
5 diff
(99.1 %id)
FN109894 breast carcinoma .f 1209 to 1287 77 to 1     Submitted on the opposite strand 77/77
(100 %)
2 diff
(97.5 %id)
BM727359 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f 1230 to 1698 1 to 469   fully sequenced, Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 469/469
(100 %)
0 diff
(100 %id)
BI832188 brain, medulla .f 1262 to 1906 12 to 656       645/663
(97 %)
13 diff
(98.1 %id)
TI_57175138   .f 1262 to 1906 12 to 656       645/663
(97 %)
13 diff
(98.1 %id)
BG220201   .f 1265 to 2055 4 to 795       792/796
(99 %)
11 diff
(98.7 %id)
BP306656   .f 1267 to 1843 1 to 579       579/581
(99 %)
4 diff
(99.4 %id)
BM550460 amelanotic melanoma, cell line, skin .f 1357 to 2050 1 to 694       694/701
(99 %)
12 diff
(98.3 %id)
BM914808 amelanotic melanoma, cell line, skin .f 1357 to 2051 18 to 712       695/749
(92 %)
4 diff
(99.5 %id)
BM911624 amelanotic melanoma, cell line, skin .f 1358 to 2049 1 to 691       691/1205
(57 %)
15 diff
(98.8 %id)
BM810300 amelanotic melanoma, cell line, skin .f 1358 to 2049 1 to 691   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 691/691
(100 %)
3 diff
(99.6 %id)
BM555309 amelanotic melanoma, cell line, skin .f 1363 to 1879 34 to 550       517/585
(88 %)
3 diff
(99.5 %id)
TI_149290626   .f 1374 to 2049 760 to 84   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 677/953
(71 %)
4 diff
(99.6 %id)
BM846874 myeloma .f 1375 to 1834 1 to 458       458/458
(100 %)
6 diff
(98.7 %id)
D82617   .f 1399 to 1781 1 to 390       390/397
(98 %)
16 diff
(96.0 %id)
T48497   .f 1399 to 1781 1 to 390       390/397
(98 %)
16 diff
(96.0 %id)
BM973597 lung .f 1413 to 2049 655 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 637/637
(100 %)
2 diff
(99.7 %id)
BG167374 hypernephroma, cell line, Kidney .f 1436 to 2153 1 to 704       704/925
(76 %)
25 diff
(97.3 %id)
BM263026 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .f 1462 to 2066 7 to 611       605/611
(99 %)
7 diff
(98.9 %id)
BG208161   .f 1466 to 2265 1 to 788       788/791
(99 %)
19 diff
(97.6 %id)
AA248208   .f 1467 to 1635 1 to 169       169/169
(100 %)
1 diff
(99.5 %id)
AA873278 2 pooled tumors (clear cell type), Kidney .f 1470 to 2050 580 to 1       580/580
(100 %)
6 diff
(99.0 %id)
BQ019409 Chondrosarcoma, Left Pubic Bone .f 1474 to 2044 589 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 571/571
(100 %)
0 diff
(100 %id)
CV570151 cornea, eye .f 1484 to 2049 585 to 20   AAA Submitted on the opposite strand 566/566
(100 %)
0 diff
(100 %id)
CV571236 cornea, eye .f 1486 to 1950 1 to 465       465/465
(100 %)
0 diff
(100 %id)
AW675444 cervix .f 1503 to 2044 554 to 13   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 542/545
(99 %)
1 diff
(99.9 %id)
AA228692   .f 1510 to 1873 382 to 20       363/386
(94 %)
4 diff
(99.0 %id)
AA613957 adrenal adenoma, adrenal gland .f 1515 to 2044 530 to 1       530/530
(100 %)
0 diff
(100 %id)
AI032162 germ cell tumor .f 1515 to 2047 533 to 1       533/533
(100 %)
3 diff
(99.5 %id)
AA229838   .f 1516 to 1873 32 to 388       357/413
(86 %)
7 diff
(98.4 %id)
BQ024744 placenta .f 1521 to 2049 547 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 529/537
(98 %)
0 diff
(100 %id)
BQ024766 placenta .f 1521 to 2049 547 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 529/537
(98 %)
0 diff
(100 %id)
BF106158 lung .f 1535 to 2239 1 to 705       705/808
(87 %)
43 diff
(94.7 %id)
AA055956 heart .f 1568 to 1913 7 to 361   fully sequenced,   355/361
(98 %)
12 diff
(96.7 %id)
N63591 multiple sclerosis lesions .f 1576 to 2049 487 to 12   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 476/480
(99 %)
4 diff
(99.2 %id)
BQ026160 placenta .f 1589 to 2051 478 to 16       463/478
(96 %)
0 diff
(100 %id)
AI082025 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 1591 to 2044 454 to 1       454/454
(100 %)
0 diff
(100 %id)
AI371869 pooled germ cell tumors .f 1591 to 2050 460 to 1       460/460
(100 %)
0 diff
(100 %id)
BU618659 Cell Line, Chondrosarcoma .f 1627 to 2347 738 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 720/720
(100 %)
5 diff
(99.4 %id)
BM681736 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .f 1637 to 2049 431 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 413/413
(100 %)
0 diff
(100 %id)
AA055957 heart .f 1883 to 2053 174 to 1   fully sequenced,   174/174
(100 %)
3 diff
(98.3 %id)
AK307922 thalamus .g 1 to 1223 1 to 1224   tiling clone,   1222/1224
(99 %)
1 diff
(100.0 %id)
DC343626 thalamus .g 1 to 645 1 to 645       645/645
(100 %)
0 diff
(100 %id)
DC412348 kidney, tumor tissue .g 1 to 555 1 to 555       555/555
(100 %)
0 diff
(100 %id)
BP328093 prostata .g 6 to 586 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BQ441869 embryonal carcinoma, cell line, testis .g 1160 to 1971 1 to 816   tiling clone,   816/882
(92 %)
6 diff
(99.4 %id)
BQ269525 Pancreas, Purified pancreatic islet .h 1 to 350 4 to 353   tiling clone, fully sequenced,   350/353
(99 %)
5 diff
(98.6 %id)
CV385818 colon .h 22 to 589 583 to 14     Submitted on the opposite strand 570/583
(97 %)
0 diff
(100 %id)
CV385824 colon .h 22 to 589 583 to 14     Submitted on the opposite strand 570/583
(97 %)
0 diff
(100 %id)
BM998206 lung, Metastatic Chondrosarcoma .h 236 to 814 580 to 2   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 579/584
(99 %)
0 diff
(100 %id)
BQ631919 Pancreas, Purified pancreatic islet .h 259 to 737 1 to 479       479/479
(100 %)
2 diff
(99.6 %id)
CK902175 Pancreas, Purified pancreatic islet .h 262 to 811 552 to 3   AAA Submitted on the opposite strand 550/552
(99 %)
0 diff
(100 %id)
BQ286162 Pancreas, Purified pancreatic islet .h 320 to 799 480 to 1   fully sequenced,   480/480
(100 %)
0 diff
(100 %id)
AW469355 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .h 333 to 800 468 to 1       468/468
(100 %)
0 diff
(100 %id)
AA382255 testis .h 336 to 603 1 to 268       268/269
(99 %)
1 diff
(99.7 %id)
BQ632217 Pancreas, Purified pancreatic islet .h 347 to 799 453 to 1       453/453
(100 %)
0 diff
(100 %id)
AL602604 human skeletal muscle .h 422 to 1014 1 to 595   tiling clone,   595/595
(100 %)
3 diff
(99.5 %id)
FN166100 breast carcinoma .h 808 to 882 1 to 73       73/73
(100 %)
2 diff
(97.3 %id)
AL599825   .h 850 to 1180 1 to 334       334/334
(100 %)
18 diff
(94.7 %id)
DB158171 thymus .h 863 to 1436 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DN918483   .h 951 to 1583 1 to 633   tiling clone,   633/633
(100 %)
0 diff
(100 %id)
DB346654 thymus .h 1765 to 2296 532 to 1   tiling clone,   532/532
(100 %)
0 diff
(100 %id)
BQ436856 embryonal carcinoma, cell line, testis .i 1 to 701 8 to 711 C175W P178S Q179T D180G K181* tiling clone,   837/912
(91 %)
42 diff
(95.4 %id)
BG772276 testis .j 1 to 789 1 to 788   tiling clone,   788/788
(100 %)
8 diff
(99.0 %id)
BM955834 tonsil .k 1 to 522 1 to 523 K6X Q7R I9L M10X N17I ... tiling clone,   523/524
(99 %)
11 diff
(98.0 %id)
DN918484   .k 133 to 774 638 to 1       638/645
(98 %)
8 diff
(98.8 %id)
AA574179 breast .k 138 to 515 394 to 17   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 378/378
(100 %)
0 diff
(100 %id)
AV758434 bone marrow .k 143 to 515 59 to 431   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 373/431
(86 %)
5 diff
(98.9 %id)
BI090834 cervix .k 145 to 788 1 to 656       656/947
(69 %)
23 diff
(97.6 %id)
AW439310 serous papillary carcinoma, high grade, 2pooled tumors, uterus .k 148 to 522 377 to 3       375/377
(99 %)
0 diff
(100 %id)
AA399500   .k 152 to 515 1 to 364   fully sequenced,   364/364
(100 %)
0 diff
(100 %id)
AI015281   .k 186 to 522 338 to 2       337/338
(99 %)
0 diff
(100 %id)
AA249335   .k 190 to 443 1 to 255       255/255
(100 %)
1 diff
(99.7 %id)
BG530716 embryonal carcinoma, testis .k 193 to 675 1 to 491       491/654
(75 %)
18 diff
(97.3 %id)
BM142602 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .k 196 to 781 586 to 1       586/586
(100 %)
1 diff
(99.9 %id)
BQ022748 placenta .k 203 to 520 336 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 318/318
(100 %)
0 diff
(100 %id)
AI567375 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .k 213 to 515 314 to 11   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 304/304
(100 %)
1 diff
(99.7 %id)
AA524016 colon .k 220 to 515 296 to 1       296/296
(100 %)
0 diff
(100 %id)
AJ243242 stomach, thyroid .k 239 to 518 1 to 280       280/280
(100 %)
0 diff
(100 %id)
BE935497 marrow .k 239 to 442 5 to 208       204/208
(98 %)
6 diff
(97.2 %id)
BG926083 cartilage .k 252 to 515 86 to 349   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 264/281
(93 %)
0 diff
(100 %id)
G36881   .k 256 to 522 272 to 3     Submitted on the opposite strand 270/272
(99 %)
0 diff
(100 %id)
AA635017 lung, lung carcinoma .k 271 to 516 246 to 1     Submitted on the opposite strand 246/246
(100 %)
0 diff
(100 %id)
BF837920 head_neck .k 274 to 533 1 to 260       260/260
(100 %)
1 diff
(99.7 %id)
AI744811 ovary, tumor, 5 pooled (see description) .k 276 to 782 507 to 1       507/507
(100 %)
0 diff
(100 %id)
AI280447 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k 285 to 515 248 to 18   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 231/231
(100 %)
1 diff
(99.6 %id)
AA382254 testis .k 286 to 520 235 to 1       235/235
(100 %)
0 diff
(100 %id)
BM469813 lymph, lymphoma, cell line .k 298 to 1097 50 to 856   tiling clone,   807/1043
(77 %)
6 diff
(99.5 %id)
FN066041 breast carcinoma .k 307 to 399 1 to 95       95/95
(100 %)
2 diff
(97.9 %id)
AL045783 testis .k 314 to 520 1 to 207   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 207/207
(100 %)
1 diff
(99.6 %id)
BU958302 mixed (pool of 40 RNAs) .k 316 to 520 1 to 205   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 205/205
(100 %)
2 diff
(99.1 %id)
AA608723 lung, lung carcinoma .k 320 to 782 463 to 1       463/463
(100 %)
0 diff
(100 %id)
AI857368 serous papillary carcinoma, high grade, 2pooled tumors, uterus .k 321 to 515 210 to 16   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 195/195
(100 %)
0 diff
(100 %id)
AA398158   .k 326 to 523 198 to 1   fully sequenced,   198/198
(100 %)
1 diff
(99.5 %id)
AI280781 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .k 355 to 783 429 to 1       429/429
(100 %)
1 diff
(99.8 %id)
AI890363 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .k 355 to 797 444 to 1       444/444
(100 %)
6 diff
(98.7 %id)
AI696988 adenocarcinoma, Pancreas .k 368 to 782 414 to 1       414/414
(100 %)
1 diff
(99.8 %id)
AI290131 serous papillary carcinoma, high grade, 2pooled tumors, uterus .k 374 to 783 410 to 1       410/410
(100 %)
0 diff
(100 %id)
AW105686 ovary, tumor, 5 pooled (see description) .k 385 to 521 137 to 1       137/137
(100 %)
0 diff
(100 %id)
EC457710 Prostate .k 391 to 510 126 to 6       121/126
(96 %)
0 diff
(100 %id)
BU570260 testis .k 396 to 1172 1 to 784       784/784
(100 %)
15 diff
(98.1 %id)
AA732941 heart .k 401 to 783 383 to 1       383/383
(100 %)
0 diff
(100 %id)
H94062 liver and spleen .k 402 to 784 391 to 1       391/403
(97 %)
11 diff
(97.3 %id)
AI860580 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .k 411 to 919 509 to 1       509/509
(100 %)
0 diff
(100 %id)
AI289810 serous papillary carcinoma, high grade, 2pooled tumors, uterus .k 430 to 782 353 to 1       353/353
(100 %)
0 diff
(100 %id)
FN105147 breast carcinoma .k 483 to 601 117 to 1     Submitted on the opposite strand 117/117
(100 %)
2 diff
(98.3 %id)
AI537282 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .k 552 to 782 231 to 1       231/231
(100 %)
0 diff
(100 %id)
AA678272 liver and spleen .k 567 to 782 216 to 1       216/216
(100 %)
0 diff
(100 %id)
BQ945964 leiomyosarcoma, uterus .k 586 to 1436 12 to 868       857/879
(97 %)
21 diff
(97.7 %id)
AW999224 breast_normal .k 664 to 858 1 to 195       195/195
(100 %)
2 diff
(99.0 %id)
BQ772346 Chondrosarcoma Grade II, Left Pelvis .k 688 to 1473 797 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 779/788
(98 %)
9 diff
(98.9 %id)
BG434857 placenta .k 696 to 1313 1 to 619       619/619
(100 %)
6 diff
(99.1 %id)
AA719688 pineal gland .k 703 to 779 77 to 1       77/77
(100 %)
0 diff
(100 %id)
BU608928 Human Lung Epithelial cells, lung .k 714 to 1471 775 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 757/757
(100 %)
1 diff
(99.9 %id)
CA414859 Chondrosarcoma Grade II, Left Pelvis .k 722 to 1473 768 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 750/750
(100 %)
4 diff
(99.5 %id)
BQ775034 Bone, Human Chondrosarcoma Cell Line .k 738 to 1467 747 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 729/729
(100 %)
1 diff
(99.9 %id)
BQ027424 mixed .k 798 to 1302 11 to 515     Submitted on the opposite strand 505/515
(98 %)
6 diff
(98.9 %id)
BG542002 lung .k 917 to 1323 1 to 407       407/409
(99 %)
2 diff
(99.6 %id)
AA056317 eye, retina .k 953 to 1204 1 to 253       253/253
(100 %)
5 diff
(98.1 %id)
AI278623 placenta .k 961 to 1487 528 to 2   tiling clone,   527/528
(99 %)
0 diff
(100 %id)
AI208402   .k 972 to 1292 321 to 1       321/321
(100 %)
0 diff
(100 %id)
AI434546 lymph node, lymphoma, follicular mixed small and largecell .k 972 to 1467 496 to 1       496/496
(100 %)
0 diff
(100 %id)
H01409 placenta .k 977 to 1339 1 to 367       367/374
(98 %)
5 diff
(98.7 %id)
DB563391 hypothalamus .k 1026 to 1467 1 to 444     Submitted on the opposite strand 444/444
(100 %)
4 diff
(99.1 %id)
AW975091   .k 1043 to 1467 518 to 94   AAA Submitted on the opposite strand 425/478
(88 %)
0 diff
(100 %id)
AI291692 placenta .k 1048 to 1428 381 to 1       381/381
(100 %)
0 diff
(100 %id)
BM828874 Ascites, stomach .k 1052 to 1412 1 to 361       361/361
(100 %)
1 diff
(99.8 %id)
AI989437 brain, three pooled meningiomas .k 1075 to 1474 401 to 2       400/401
(99 %)
0 diff
(100 %id)
AI039142   .k 1087 to 1467 392 to 11   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 382/382
(100 %)
2 diff
(99.5 %id)
CA337488 1st pharyngeal arch (pooled) .k 1132 to 1467 1 to 336   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 336/336
(100 %)
1 diff
(99.8 %id)
AA658394   .k 1138 to 1293 156 to 1       156/156
(100 %)
1 diff
(99.4 %id)
D62086   .k 1219 to 1426 1 to 207       207/207
(100 %)
1 diff
(99.6 %id)
AI540749 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .k 1297 to 1468 173 to 1       173/173
(100 %)
1 diff
(99.5 %id)
CV570839 cornea, eye .k 1896 to 2519 1 to 623   tiling clone,   623/623
(100 %)
1 diff
(99.9 %id)
BG696214 skin .k 2410 to 3006 1 to 597       597/597
(100 %)
0 diff
(100 %id)
BM756345 Ascites, stomach .k 2480 to 3115 1 to 636   tiling clone,   636/636
(100 %)
0 diff
(100 %id)
BG032092 breast, mammary adenocarcinoma, cell line .k 2509 to 3241 1 to 728       728/940
(77 %)
14 diff
(98.6 %id)
AW235632 Kidney .k 2764 to 3335 576 to 5       572/576
(99 %)
0 diff
(100 %id)
AW195429 Kidney .k 2809 to 3341 536 to 3       534/536
(99 %)
0 diff
(100 %id)
AI861848 Kidney .k 2854 to 3339 505 to 20   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 486/486
(100 %)
4 diff
(99.2 %id)
AA233305 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k 2882 to 3223 1 to 342       342/342
(100 %)
0 diff
(100 %id)
AI810097 pooled .k 2882 to 3341 464 to 5       460/464
(99 %)
0 diff
(100 %id)
BF224445 Kidney .k 2919 to 3340 423 to 2       422/423
(99 %)
0 diff
(100 %id)
AL079956 uterus .k 2944 to 3254 1 to 311       311/312
(99 %)
3 diff
(99.1 %id)
FN161563 breast carcinoma .k 2964 to 3080 115 to 1     Submitted on the opposite strand 115/119
(96 %)
7 diff
(94.2 %id)
FN157585 breast carcinoma .k 3040 to 3108 75 to 7     Submitted on the opposite strand 69/83
(83 %)
0 diff
(100 %id)
CA406704 adipose .k 3109 to 3437 1 to 329   tiling clone,   329/329
(100 %)
0 diff
(100 %id)
BM714000 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .k 3244 to 3671 1 to 428   fully sequenced, Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 428/428
(100 %)
1 diff
(99.8 %id)
BQ574446 Chondrosarcoma Grade II, Left Pelvis .k 3315 to 4003 707 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 689/689
(100 %)
0 diff
(100 %id)
BI087458 cervix .k 3343 to 4005 1 to 663   AAA   663/682
(97 %)
3 diff
(99.6 %id)
AI401336 brain, glioblastoma (pooled) .k 3515 to 4003 489 to 1       489/489
(100 %)
0 diff
(100 %id)
AI374826   .k 3527 to 4005 480 to 6       475/480
(98 %)
0 diff
(100 %id)
AI590346 Kidney .k 3536 to 4003 485 to 18   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 468/468
(100 %)
6 diff
(98.8 %id)
AI138574   .k 3564 to 4005 446 to 4       443/446
(99 %)
0 diff
(100 %id)
BX107083 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .k 3594 to 4003 424 to 15   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 410/410
(100 %)
0 diff
(100 %id)
AW137582   .k 3639 to 4003 380 to 16   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 365/365
(100 %)
2 diff
(99.5 %id)
BM674631 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .k 3641 to 4003 379 to 17   fully sequenced, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 363/363
(100 %)
3 diff
(99.2 %id)
AI471165 brain, glioblastoma (pooled) .k 3693 to 4001 308 to 1       308/308
(100 %)
1 diff
(99.7 %id)
AI277299 placenta .k 3739 to 4005 272 to 6       267/272
(98 %)
0 diff
(100 %id)
AI886117 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .k 3764 to 4003 254 to 14   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 241/241
(100 %)
3 diff
(98.8 %id)
BF062875 colon, colon tumor, RER+ .k 3902 to 4003 104 to 3       534/568
(94 %)
9 diff
(98.5 %id)
G36502   .k 3935 to 4404 474 to 2     Submitted on the opposite strand 473/474
(99 %)
0 diff
(100 %id)
AA056258 eye, retina .k 3935 to 4405 474 to 1   tiling clone,   474/474
(100 %)
3 diff
(99.4 %id)
BP292166 lung .l 1 to 572 1 to 572 exact tiling clone,   572/572
(100 %)
1 diff
(99.9 %id)
DA164040 amygdala .l 2 to 558 2 to 560 R39P V40C L41F E42R D44G ... capped   559/564
(99 %)
3 diff
(99.5 %id)
DB120007 thymus .l 2 to 640 2 to 640 exact tiling clone, capped   639/639
(100 %)
1 diff
(99.9 %id)
DA879058 Prostate .l 12 to 582 2 to 572 exact capped   571/571
(100 %)
1 diff
(99.9 %id)
DW451851 Liver .m 1 to 360 15 to 374 exact tiling clone,   363/374
(97 %)
8 diff
(97.9 %id)
DB160920 thymus .n-u 1 to 507 2 to 509   tiling clone, to resequence, capped   508/508
(100 %)
1 diff
(99.9 %id)
AK090510 adrenal gland .n-u 1260 to 4222 1 to 2963 exact tiling clone, available from FLJ,   2963/2963
(100 %)
3 diff
(99.9 %id)
DA012917 adrenal gland .n-u 1261 to 1830 2 to 573   capped   572/572
(100 %)
4 diff
(99.4 %id)
BF915831 uterus_tumor .n-u 1951 to 2145 205 to 13     Submitted on the opposite strand 193/215
(89 %)
0 diff
(100 %id)
BX117735 liver and spleen .n-u 3275 to 4064 1 to 791       791/797
(99 %)
2 diff
(99.8 %id)
H59049 liver and spleen .n-u 3276 to 3660 1 to 391       391/401
(97 %)
11 diff
(97.3 %id)
W01973 liver and spleen .n-u 3277 to 3736 1 to 450       450/483
(93 %)
13 diff
(97.4 %id)
BQ187267 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .n-u 3369 to 3941 1 to 573   fully sequenced, Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 573/573
(100 %)
1 diff
(99.9 %id)
TI_151734238   .n-u 3369 to 3941 670 to 98   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 573/929
(61 %)
0 diff
(100 %id)
BU617168 Bone, Subchondral Bone .n-u 3374 to 3941 586 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 568/575
(98 %)
0 diff
(100 %id)
DB346837 thymus .n-u 3404 to 3941 538 to 1   to resequence,   538/538
(100 %)
0 diff
(100 %id)
CK300594 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .n-u 3551 to 3941 409 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 391/391
(100 %)
0 diff
(100 %id)
DB295316 adrenal gland .n-u 3672 to 4222 551 to 1       551/551
(100 %)
0 diff
(100 %id)
N68511 liver and spleen .n-u 3787 to 4210 427 to 1       427/428
(99 %)
6 diff
(98.6 %id)
H59050 liver and spleen .n-u 3807 to 4202 400 to 1       400/403
(99 %)
12 diff
(97.1 %id)
AF150163 umbilical cord blood .o-u 1 to 786 1 to 787 exact tiling clone,   787/787
(100 %)
2 diff
(99.8 %id)
BF360178 marrow .o-u 125 to 447 27 to 347       321/347
(92 %)
6 diff
(98.3 %id)
AF150151 umbilical cord blood .o-u 168 to 1689 1 to 1527   tiling clone,   1527/1527
(100 %)
15 diff
(99.1 %id)
BF360172 marrow .o-u 285 to 617 337 to 1       337/337
(100 %)
13 diff
(96.2 %id)
BX486201   .o-u 294 to 698 1 to 405   tiling clone,   405/405
(100 %)
0 diff
(100 %id)
BE089972 breast .o-u 346 to 614 1 to 269       269/269
(100 %)
7 diff
(97.4 %id)
BF906286 marrow .o-u 351 to 723 399 to 27     Submitted on the opposite strand 373/642
(58 %)
0 diff
(100 %id)
BI021365 marrow .o-u 351 to 723 399 to 27       373/502
(74 %)
0 diff
(100 %id)
AV739568 cord Blood .o-u 576 to 786 36 to 247   AAA   212/247
(85 %)
6 diff
(97.6 %id)
AV740646 cord Blood .o-u 1502 to 1689 248 to 59   AAA Submitted on the opposite strand 190/231
(82 %)
4 diff
(98.3 %id)
BX486202   .o-u 1699 to 2191 497 to 7   tiling clone,   491/497
(98 %)
0 diff
(100 %id)
AW850666 colon .o-u 1927 to 2364 443 to 1   tiling clone,   443/443
(100 %)
4 diff
(99.1 %id)
AW850600 colon .o-u 2193 to 2364 172 to 1       172/172
(100 %)
1 diff
(99.5 %id)
R34948 placenta .p-u 1 to 360 1 to 368   tiling clone,   368/368
(100 %)
11 diff
(97.1 %id)
FN153959 breast carcinoma .p-u 93 to 193 1 to 102   tiling clone,   102/102
(100 %)
1 diff
(99.1 %id)
BM677533 eye, fetal eye .p-u 218 to 909 710 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 692/692
(100 %)
4 diff
(99.5 %id)
AI500522 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .p-u 310 to 715 2 to 406   tiling clone, Submitted on the opposite strand 405/406
(99 %)
6 diff
(98.6 %id)
DA438409 tongue, tumor tissue .q 1 to 544 2 to 546   tiling clone, capped   545/545
(100 %)
2 diff
(99.7 %id)
DB033351 testis .q 46 to 640 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DB096343 testis .q 48 to 589 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA205052 brain .q 54 to 625 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA264666 caudate nucleus .q 54 to 630 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA320667 hippocampus .q 54 to 612 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DA388745 thalamus .q 54 to 641 2 to 589   tiling clone, capped   588/588
(100 %)
0 diff
(100 %id)
DA888413   .q 77 to 597 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
BQ005796 Chondrosarcoma, Left Pubic Bone .q 166 to 861 711 to 17 N109I L110F D112M E113S P114Q ... tiling clone, AAA   695/695
(100 %)
1 diff
(99.9 %id)
AV714478   .r 1 to 757 1 to 700 I79S R80D F81S K82T R83T ... tiling clone, Suspected internal deletion 700/700
(100 %)
6 diff
(99.2 %id)
CR735916 liver and spleen .s-u 1 to 710 1 to 708 S2R V4L V5* tiling clone,   708/708
(100 %)
5 diff
(99.3 %id)
DB031165 testis .t 1 to 603 2 to 604 exact tiling clone, capped   603/603
(100 %)
1 diff
(99.9 %id)
DA980591 synovial membrane tissue from rheumatioidarthritis .u 1 to 582 2 to 584 exact tiling clone, capped   583/583
(100 %)
1 diff
(99.9 %id)
DB124295 thymus .u 2 to 465 2 to 465 exact capped   464/464
(100 %)
0 diff
(100 %id)
DB149303 thymus .u 3 to 572 2 to 571 exact tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
DB182229 liver, tumor tissue .va 1 to 565 2 to 566 exact tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
DA817771   .vb 1 to 556 2 to 557 exact tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
DW416945 Liver .vc-u 1 to 291 17 to 307 exact tiling clone,   291/307
(94 %)
6 diff
(98.1 %id)
AI940433 colon Gene TBC1D15, variant not shown         This clone was ignored    
F07787 brain, total brain Gene TBC1D15, variant not shown         Suspected internal deletion, this clone was ignored    
Z41726 brain, total brain Gene TBC1D15, variant not shown         Suspected internal deletion, this clone was ignored    
CN285179 embryonic stem cells, cell lines H1, H7, andH9 Gene TBC1D15, variant not shown              
AV716029   Gene TBC1D15, variant not shown         Suspected internal deletion, this clone was ignored    
BX505268   Gene TBC1D15, variant not shown              
FN126919 breast carcinoma Gene TBC1D15, variant not shown         Submitted on the opposite strand    
AV692327 hepatocellular carcinoma Gene TBC1D15, variant not shown         Suspected internal deletion, this clone was ignored    
AV700343 hepatocellular carcinoma Gene TBC1D15, variant not shown         Suspected internal deletion, this clone was ignored    
AV686369 hepatocellular carcinoma Gene TBC1D15, variant not shown         This clone was ignored    
AV690927 hepatocellular carcinoma Gene TBC1D15, variant not shown         This clone was ignored    
AV693113 hepatocellular carcinoma Gene TBC1D15, variant not shown         Suspected internal deletion, this clone was ignored    
CA942051 Pancreas, Purified pancreatic islet Gene TBC1D15, variant not shown              
CA952871 Pancreas, Purified pancreatic islet Gene TBC1D15, variant not shown       AAA      
DB160158 thymus Gene TBC1D15, variant not shown       capped      
DB346788 thymus Gene TBC1D15, variant not shown              
DB215947 trachea Gene TBC1D15, variant not shown       capped This clone was ignored    
DB349077 trachea Gene TBC1D15, variant not shown         This clone was ignored    
DB280513 uterus Gene TBC1D15, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n-u, .o-u, .p-u, .q, .r, .s-u, .t, .u, .va, .vb, .vc-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI