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Gene TAF5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
95 supporting clones for gene TAF5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_2194628552   .a 1 to 1087 50 to 1125   tiling clone,   1083/1268
(85 %)
22 diff
(98.3 %id)
TI_2194631124   .a 1 to 785 52 to 839       795/845
(94 %)
38 diff
(95.6 %id)
DB093194 testis .a 1 to 548 9 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
NM_006951.3   .a 1 to 3261 6 to 3266 exact RefSeq, AAA   3266/3266
(100 %)
0 diff
(100 %id)
X95525   .a 1 to 3078 6 to 3078 A126T S130A F300L P455S A469V ...     3078/3089
(99 %)
9 diff
(99.8 %id)
BC136348 Testis, PCR rescued clones .a 1 to 3191 1 to 3191 S130A tiling clone,   3191/3191
(100 %)
1 diff
(100.0 %id)
DB081944 testis .a 1 to 322 2 to 323   capped   322/322
(100 %)
1 diff
(99.7 %id)
BC052268 Prostate, carcinoma .a 4 to 3256 1 to 3253 R787L available from MGC, AAA   3253/3253
(100 %)
1 diff
(100.0 %id)
U80191   .a 5 to 2737 1 to 2733 S130A AAA   2733/2733
(100 %)
2 diff
(100.0 %id)
AK223615 brain .a 10 to 3110 1 to 3101 A126T S130A     3101/3101
(100 %)
2 diff
(100.0 %id)
U75309   .a 16 to 2440 1 to 2425 exact AAA   2425/2425
(100 %)
1 diff
(100.0 %id)
DA810772 brain .a 17 to 565 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
BE778147 eye, retinoblastoma .a 59 to 815 1 to 758       758/1059
(71 %)
25 diff
(97.7 %id)
TI_2194628367   .a 485 to 1369 8 to 892       885/892
(99 %)
18 diff
(98.0 %id)
AK291229   .a 578 to 2755 597 to 2774 exact     2774/2774
(100 %)
1 diff
(100.0 %id)
DA749749   .a 814 to 1377 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA876002 Prostate .a 932 to 1498 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA617977   .a 1236 to 1811 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DB037050 testis .a 1334 to 1907 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
CN354806 embryonic stem cells, DMSO-treated H9 cellline .a 1454 to 2114 9 to 669       661/669
(98 %)
6 diff
(99.2 %id)
EC532519 Prostate .a 1555 to 1650 98 to 4       95/98
(96 %)
0 diff
(100 %id)
EC576083 Prostate .a 1555 to 1649 92 to 2       91/92
(98 %)
0 diff
(100 %id)
AA322411 brain, cerebellum .a 1593 to 1886 1 to 294       294/294
(100 %)
0 diff
(100 %id)
CR610839 Neuroblastoma Cot 25-normalized .a 1723 to 3211 1 to 1489       1489/1489
(100 %)
0 diff
(100 %id)
AL524839 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 1723 to 2636 1 to 902   fully sequenced,   902/902
(100 %)
1 diff
(99.9 %id)
CB143902 Liver .a 1730 to 2138 2 to 409       408/409
(99 %)
8 diff
(98.1 %id)
AA251994 germinal center B cell .a 1759 to 2080 1 to 322       322/324
(99 %)
9 diff
(97.3 %id)
BG533689 Liver .a 1794 to 2554 1 to 765       765/765
(100 %)
16 diff
(98.0 %id)
BX113246 pooled .a 1808 to 2281 1 to 474       474/474
(100 %)
0 diff
(100 %id)
BQ374659 testis_normal .a 1840 to 2277 33 to 471       439/471
(93 %)
27 diff
(94.3 %id)
TI_2194628487   .a 1844 to 2194 353 to 2       352/360
(97 %)
2 diff
(99.5 %id)
TI_2194628591   .a 1858 to 3040 1195 to 30       1166/1309
(89 %)
15 diff
(98.9 %id)
AI768260 pooled .a 1876 to 2437 572 to 11       562/572
(98 %)
1 diff
(99.9 %id)
DA001308   .a 1914 to 2430 2 to 520   capped   519/520
(99 %)
3 diff
(99.5 %id)
AI452991 pooled .a 1933 to 2433 516 to 16   AAA   501/501
(100 %)
5 diff
(99.1 %id)
CA425701 cell lines, Chondrosarcoma .a 2092 to 2745 667 to 14   AAA   654/654
(100 %)
11 diff
(98.4 %id)
TI_2194628492   .a 2101 to 3049 961 to 9       951/970
(98 %)
10 diff
(99.0 %id)
TI_2194631125   .a 2105 to 3196 1161 to 76       1086/1161
(93 %)
11 diff
(99.1 %id)
TI_2194628555   .a 2110 to 3196 1152 to 72       1081/1321
(81 %)
12 diff
(99.1 %id)
TI_2194628372   .a 2113 to 2910 11 to 807       797/807
(98 %)
8 diff
(99.1 %id)
CN354805 embryonic stem cells, cell lines H1, H7, andH9 .a 2122 to 2720 1 to 601       601/601
(100 %)
5 diff
(99.2 %id)
BG290312 bladder, transitional cell papilloma, cell line .a 2158 to 2891 1 to 731       731/776
(94 %)
15 diff
(98.1 %id)
BU158731 embryonal carcinoma, cell line, testis .a 2242 to 3018 1 to 792       792/827
(95 %)
28 diff
(96.7 %id)
BU193699 testis .a 2314 to 3068 1 to 756       756/757
(99 %)
6 diff
(99.3 %id)
TI_2194628369   .a 2376 to 3196 1 to 821       821/885
(92 %)
12 diff
(98.7 %id)
AL524838 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 2606 to 3197 601 to 15   fully sequenced,   587/601
(97 %)
61 diff
(89.9 %id)
EY123327 intestinal (Lauren) gastric adenocarcinoma, stomach .a 2637 to 2794 8 to 165   AAA   158/165
(95 %)
6 diff
(96.4 %id)
TI_2194628484   .a 2700 to 3051 358 to 7       352/360
(97 %)
0 diff
(100 %id)
BF033634 adenocarcinoma, ovary .a 2708 to 3245 557 to 1     Submitted on the opposite strand 557/862
(64 %)
35 diff
(96.0 %id)
AA827897 germinal center B cell .a 2721 to 3258 548 to 11   AAA   538/538
(100 %)
0 diff
(100 %id)
AI590915 normal gingiva (cell line from immortalizedkeratinocytes) .a 2795 to 3259 465 to 1       465/465
(100 %)
2 diff
(99.6 %id)
AW138827   .a 2802 to 3261 477 to 18   AAA   460/466
(98 %)
2 diff
(99.6 %id)
AW241461 pooled germ cell tumors .a 2827 to 3261 435 to 1       435/435
(100 %)
0 diff
(100 %id)
AA977222 pooled germ cell tumors .a 2839 to 3261 423 to 1       423/423
(100 %)
0 diff
(100 %id)
BE503231 pooled germ cell tumors .a 2839 to 3261 423 to 1       423/423
(100 %)
0 diff
(100 %id)
BF056948 pooled germ cell tumors .a 2839 to 3261 423 to 1       423/423
(100 %)
0 diff
(100 %id)
AI653043 pooled germ cell tumors .a 2842 to 3248 443 to 27       417/443
(94 %)
0 diff
(100 %id)
TI_2194628368   .a 2846 to 3196 1 to 351       351/934
(37 %)
7 diff
(99.3 %id)
BU940511 mixed (pool of 40 RNAs) .a 2849 to 3259 1 to 413       413/883
(46 %)
4 diff
(99.6 %id)
AI039799   .a 2885 to 3175 111 to 401     Submitted on the opposite strand 291/401
(72 %)
6 diff
(98.6 %id)
AA329391   .a 2888 to 3186 1 to 300       300/303
(99 %)
2 diff
(99.4 %id)
AI269393 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2889 to 3258 374 to 5       370/374
(98 %)
0 diff
(100 %id)
AW949470   .a 2895 to 3261 1 to 367   AAA   367/367
(100 %)
0 diff
(100 %id)
AA251738 germinal center B cell .a 2911 to 3258 348 to 1       348/348
(100 %)
0 diff
(100 %id)
C20638   .a 2945 to 3252 1 to 308       308/308
(100 %)
3 diff
(99.1 %id)
AI470331 pooled .a 2975 to 3261 313 to 26   AAA   288/288
(100 %)
1 diff
(99.7 %id)
AA761844 germinal center B cell .a 2988 to 3261 317 to 44   AAA   274/274
(100 %)
0 diff
(100 %id)
AW136916   .a 2995 to 3261 284 to 18   AAA   267/267
(100 %)
4 diff
(98.6 %id)
D61297   .a 3017 to 3250 1 to 234       234/234
(100 %)
0 diff
(100 %id)
AL137373 testis .a 3066 to 3263 1 to 198   tiling clone, available from DKFZ,   198/212
(93 %)
1 diff
(99.6 %id)
AA664863 alveolar rhabdomyosarcoma .a 3248 to 3364 23 to 139   tiling clone,   117/139
(84 %)
6 diff
(95.7 %id)
EC443307 Prostate .a 3250 to 3353 1 to 104       104/104
(100 %)
4 diff
(96.2 %id)
EC439932 Prostate .a 3251 to 3353 1 to 105       105/105
(100 %)
4 diff
(96.2 %id)
EC441448 Prostate .a 3251 to 3351 1 to 101       101/101
(100 %)
3 diff
(97.1 %id)
EC484814 Prostate .a 3251 to 3353 1 to 103       103/103
(100 %)
2 diff
(98.1 %id)
EC527742 Prostate .a 3251 to 3352 1 to 98       98/98
(100 %)
6 diff
(93.9 %id)
EC557676 Prostate .a 3251 to 3352 1 to 99       99/99
(100 %)
5 diff
(95.0 %id)
EC543711 Prostate .a 3260 to 3353 14 to 107       94/107
(87 %)
6 diff
(94.4 %id)
BC136340 Testicle, PCR rescued clones .b 1 to 3031 1 to 3031 exact tiling clone,   3031/3031
(100 %)
0 diff
(100 %id)
TI_2194628588   .b 853 to 2028 1167 to 5       1163/1303
(89 %)
12 diff
(99.1 %id)
TI_2194628481   .b 877 to 2028 1149 to 2       1148/1265
(90 %)
42 diff
(96.7 %id)
TI_2194628370   .b 899 to 1881 10 to 996       987/1006
(98 %)
29 diff
(97.2 %id)
TI_2194628371   .b 1230 to 1994 1 to 765       765/765
(100 %)
6 diff
(99.3 %id)
TI_2194628488   .b 1286 to 2411 1139 to 5       1135/1247
(91 %)
30 diff
(97.6 %id)
TI_2194628595   .b 1292 to 2348 61 to 1093       1033/1300
(79 %)
82 diff
(93.7 %id)
TI_2194628482   .b 1329 to 2404 1080 to 13       1068/1084
(98 %)
29 diff
(97.4 %id)
TI_2194628596   .b 1606 to 2727 3 to 1112       1110/1250
(88 %)
17 diff
(98.7 %id)
TI_2194628373   .b 1610 to 2497 8 to 895       888/897
(98 %)
12 diff
(98.7 %id)
AL515577 brain, neuroblastoma, neuroblastoma cells .c 1 to 1083 1 to 1062   tiling clone,   1062/1081
(98 %)
30 diff
(97.3 %id)
AL515576 brain, neuroblastoma, neuroblastoma cells .c 2140 to 3213 1066 to 1   tiling clone,   1066/1098
(97 %)
43 diff
(96.1 %id)
CB106242 Ascites, stomach .d-u 1 to 411 2 to 412 exact tiling clone,   412/412
(100 %)
1 diff
(99.8 %id)
DA741420   Gene TAF5, variant not shown       capped      
DA756059   Gene TAF5, variant not shown       capped      
DA777039 brain Gene TAF5, variant not shown       capped      
DA794392 brain Gene TAF5, variant not shown       capped      
DA928343 small intestine Gene TAF5, variant not shown       capped      
DB073521 testis Gene TAF5, variant not shown       capped      
DB168957 kidney, tumor tissue Gene TAF5, variant not shown       capped This clone was ignored    
DB347233 kidney, tumor tissue Gene TAF5, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI