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Gene NFKBIDTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
79 supporting clones for gene NFKBID back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CR618036 Placenta Cot 25-normalized .a 1 to 1701 1 to 1701 exact tiling clone,   1701/1701
(100 %)
0 diff
(100 %id)
BX377126 Placenta Cot 25-normalized .a 1 to 852 1 to 850   fully sequenced,   850/850
(100 %)
2 diff
(99.8 %id)
BG685365 B-cells, primary B-cells from tonsils (cell line) .a 133 to 784 1 to 656       656/897
(73 %)
8 diff
(99.2 %id)
BX377125 Placenta Cot 25-normalized .a 822 to 1701 878 to 1   fully sequenced,   878/878
(100 %)
5 diff
(99.5 %id)
BM726736 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1136 to 1647 1 to 512   fully sequenced, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 512/512
(100 %)
1 diff
(99.9 %id)
BM681520 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1617 to 2179 579 to 17   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 563/563
(100 %)
0 diff
(100 %id)
AF385434   .b 1 to 1834 1 to 1834 exact tiling clone,   1834/1834
(100 %)
0 diff
(100 %id)
NM_139239.1   .b 1 to 1834 1 to 1834 exact RefSeq,   1834/1834
(100 %)
0 diff
(100 %id)
BI907804 leukocyte .b 119 to 773 1 to 663       663/663
(100 %)
41 diff
(93.9 %id)
TI_57234403   .b 119 to 773 32 to 694       663/694
(95 %)
40 diff
(94.3 %id)
CR994880 T-Lymphocytes .b 119 to 754 1 to 638       638/638
(100 %)
2 diff
(99.7 %id)
AW027485 pooled germ cell tumors .b 152 to 499 431 to 85       347/431
(80 %)
2 diff
(99.6 %id)
AF385433   .c 1 to 1736 1 to 1736 exact tiling clone,   1736/1736
(100 %)
0 diff
(100 %id)
DN998184 breast cancer, Mammary gland (cancer tissue) .c 105 to 759 11 to 665       655/665
(98 %)
0 diff
(100 %id)
AW860210 colon .c 249 to 362 1 to 116       116/116
(100 %)
7 diff
(94.0 %id)
BC119646 PCR rescued clones .c 379 to 1562 1 to 1184       1184/1184
(100 %)
0 diff
(100 %id)
BC119647 PCR rescued clones .c 379 to 1562 1 to 1184       1184/1184
(100 %)
0 diff
(100 %id)
BF828721 head_normal .c 435 to 605 169 to 3     Submitted on the opposite strand 167/169
(98 %)
0 diff
(100 %id)
CR981488 T-Lymphocytes .c 915 to 1347 1 to 433       433/433
(100 %)
0 diff
(100 %id)
BF751954 breast_normal .c 927 to 1187 1 to 261       261/261
(100 %)
4 diff
(98.5 %id)
DB136765 thymus .d 1 to 280 2 to 281   tiling clone, capped   280/515
(54 %)
1 diff
(99.9 %id)
BM545972 ovary (pool of 3) .d 45 to 978 32 to 973   tiling clone,   942/1126
(83 %)
27 diff
(97.7 %id)
BC006273 Ovary, adenocarcinoma .d 925 to 2466 9 to 1550   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 1542/1542
(100 %)
0 diff
(100 %id)
BE742476 adenocarcinoma cell line, ovary .d 936 to 1669 1 to 744       744/760
(97 %)
17 diff
(97.8 %id)
BE740534 adenocarcinoma cell line, ovary .d 936 to 1726 1 to 777   available from MGC,   777/944
(82 %)
22 diff
(97.7 %id)
CV029968 mixed .d 1129 to 1580 1 to 452       452/618
(73 %)
1 diff
(99.9 %id)
TI_227714255   .d 1319 to 2187 951 to 90   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 862/973
(88 %)
16 diff
(98.4 %id)
CD743210 Alveolar Macrophage, lung .d 1444 to 2187 759 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 741/742
(99 %)
3 diff
(99.6 %id)
CD368441 Alveolar Macrophage, lung .d 1483 to 2187 722 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 704/704
(100 %)
2 diff
(99.8 %id)
CD364967 Alveolar Macrophage, lung .d 1527 to 2187 677 to 17   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 661/666
(99 %)
2 diff
(99.7 %id)
BI835987 pooled pancreas and spleen .d 1657 to 2187 1 to 531   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 531/531
(100 %)
0 diff
(100 %id)
TI_57164701   .d 1657 to 2187 67 to 597   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 531/597
(88 %)
0 diff
(100 %id)
AW975501   .d 1684 to 2186 506 to 1     Submitted on the opposite strand 506/508
(99 %)
17 diff
(96.7 %id)
AI139145 heart .d 1720 to 2187 466 to 1       466/469
(99 %)
2 diff
(99.6 %id)
AA279097 germinal center B cell .d 1721 to 2187 467 to 1       467/467
(100 %)
0 diff
(100 %id)
AA910673 Kidney .d 1760 to 2185 449 to 24   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 426/426
(100 %)
3 diff
(99.3 %id)
BE674765 B-cell, chronic lymphotic leukemia .d 1765 to 2188 430 to 7       424/430
(98 %)
0 diff
(100 %id)
BE674764 B-cell, chronic lymphotic leukemia .d 1771 to 2188 424 to 7       418/424
(98 %)
0 diff
(100 %id)
AA687372 germinal center B cell .d 1814 to 2187 384 to 11   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 374/374
(100 %)
0 diff
(100 %id)
AA938293 2 pooled tumors (clear cell type), Kidney .d 1899 to 2187 332 to 44   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 289/289
(100 %)
0 diff
(100 %id)
AW337896 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .d 1905 to 2189 286 to 2       285/286
(99 %)
0 diff
(100 %id)
AW044176 pooled .d 1913 to 2188 283 to 8       276/283
(97 %)
0 diff
(100 %id)
BG150706 nasopharynx, normal epithelium .d 1934 to 2188 278 to 24       255/278
(91 %)
0 diff
(100 %id)
AI076228 B-cell, chronic lymphotic leukemia .d 2081 to 2466 414 to 29   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 386/386
(100 %)
3 diff
(99.3 %id)
BI562740 testis .e 1 to 667 1 to 680 A2G P66L G68A P69R Q70N ... tiling clone,   680/885
(76 %)
34 diff
(96.2 %id)
TI_44351243   .e 3 to 667 124 to 801       678/1006
(67 %)
29 diff
(97.2 %id)
AW151645 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 470 to 819 350 to 1       350/350
(100 %)
1 diff
(99.8 %id)
AW151646 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 470 to 819 350 to 1   tiling clone,   350/350
(100 %)
0 diff
(100 %id)
AW151637 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 470 to 819 350 to 1       350/350
(100 %)
1 diff
(99.8 %id)
AV736423 cord Blood .e 608 to 819 32 to 233   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 202/233
(86 %)
0 diff
(100 %id)
BF841775 head_neck .f 1 to 324 1 to 322   tiling clone,   322/322
(100 %)
6 diff
(98.2 %id)
BI918091 brain .f 296 to 1024 733 to 1   tiling clone, Submitted on the opposite strand 733/733
(100 %)
24 diff
(96.8 %id)
TI_57242693   .f 296 to 1031 801 to 62 L4F L22H F23V A24L A25R ... tiling clone, Submitted on the opposite strand 740/801
(92 %)
23 diff
(97.2 %id)
BI908965 leukocyte .g 1 to 809 1 to 825 N31* tiling clone,   825/858
(96 %)
26 diff
(97.0 %id)
TI_57235219   .g 1 to 809 39 to 863 N31*     825/896
(92 %)
25 diff
(97.3 %id)
TI_57147639   .g 5 to 818 85 to 900       816/900
(90 %)
12 diff
(98.7 %id)
BI760136 pooled colon, kidney, stomach .g 11 to 818 1 to 811       811/811
(100 %)
12 diff
(98.6 %id)
BM922916 leukocyte .g 12 to 906 12 to 912   tiling clone,   901/1080
(83 %)
22 diff
(98.0 %id)
BI764103 pooled colon, kidney, stomach .g 471 to 1211 1 to 733   tiling clone,   733/744
(98 %)
14 diff
(98.2 %id)
TI_57146598   .g 471 to 1211 28 to 760       737/771
(95 %)
8 diff
(99.0 %id)
CN310465 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .h 1 to 624 1 to 624 exact tiling clone,   624/624
(100 %)
2 diff
(99.7 %id)
AA005046 liver and spleen .i-u 1 to 179 1 to 179   tiling clone, fully sequenced,   179/179
(100 %)
2 diff
(98.9 %id)
AA004799 liver and spleen .i-u 149 to 742 590 to 1   tiling clone, fully sequenced,   590/590
(100 %)
6 diff
(99.0 %id)
TI_44459442   .j 1 to 816 22 to 852 R4L R5P G6R R7P G8R ... tiling clone,   831/886
(93 %)
20 diff
(97.8 %id)
BI518917 leukocyte .j 7 to 816 1 to 825 R4L R5P G6R R7P G8R ... tiling clone,   825/859
(96 %)
23 diff
(97.4 %id)
BM833460 stomach .j 785 to 1188 1 to 403   tiling clone,   403/403
(100 %)
1 diff
(99.8 %id)
BF870044 lung_tumor .k-u 1 to 271 271 to 1 exact tiling clone, Submitted on the opposite strand 271/271
(100 %)
1 diff
(99.7 %id)
BF898275 marrow .k-u 56 to 271 28 to 241       214/241
(88 %)
0 diff
(100 %id)
CB991898 placenta, pre-eclamptic placenta .k-u 161 to 710 27 to 576       550/628
(87 %)
1 diff
(99.9 %id)
CB961820 placenta, pre-eclamptic placenta .k-u 161 to 864 27 to 738   tiling clone,   712/801
(88 %)
15 diff
(98.2 %id)
BF870043 lung_tumor .k-u 287 to 468 182 to 1     Submitted on the opposite strand 182/182
(100 %)
0 diff
(100 %id)
BF898276 marrow .k-u 287 to 551 1 to 265       265/265
(100 %)
1 diff
(99.7 %id)
BF507567   .k-u 560 to 720 188 to 28       161/198
(81 %)
0 diff
(100 %id)
DA170306 amygdala .l 1 to 830 2 to 530   tiling clone, capped Suspected internal deletion 529/529
(100 %)
2 diff
(99.7 %id)
BX094856 heart .m-u 1 to 777 1 to 778 G6X R14X E15* tiling clone,   778/778
(100 %)
2 diff
(99.8 %id)
BI023058 marrow .m-u 277 to 671 9 to 400   tiling clone,   392/400
(98 %)
0 diff
(100 %id)
BF825777 head_normal .n 1 to 599 1 to 595 G5A S6A R7V A8P H9I ... tiling clone,   595/598
(99 %)
13 diff
(97.9 %id)
BF828649 head_normal .n 15 to 610 14 to 606   tiling clone,   593/606
(97 %)
1 diff
(99.9 %id)
AK126825 amygdala Gene NFKBID, variant not shown       available from FLJ, Suspected internal deletion, suspected internal deletion, this clone was ignored    
AI075275 B-cell, chronic lymphotic leukemia Gene NFKBID, variant not shown         This clone was ignored    
AW262454 normal squamous epithelium from retromolartrigone Gene NFKBID, variant not shown       AAA This clone was ignored    
BF981107 duodenal adenocarcinoma, cell line, small intestine Gene NFKBID, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j, .k-u, .l, .m-u, .n Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C