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Gene SYN1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
88 supporting clones for gene SYN1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_006950.3   .a 1 to 3210 1 to 3210 exact RefSeq,   3210/3210
(100 %)
0 diff
(100 %id)
AI929645 brain, frontal lobe .b 1 to 555 1 to 555   tiling clone,   555/555
(100 %)
2 diff
(99.7 %id)
BG707188 brain, hypothalamus .b 45 to 697 1 to 652       652/652
(100 %)
7 diff
(99.0 %id)
BI550498 brain, hippocampus .b 45 to 862 1 to 817       817/820
(99 %)
17 diff
(98.0 %id)
TI_44172067   .b 50 to 862 86 to 897       812/900
(90 %)
19 diff
(97.9 %id)
NM_133499.2   .b 50 to 3221 1 to 3172 exact RefSeq,   3172/3172
(100 %)
0 diff
(100 %id)
DR003617 hippocampus .b 64 to 707 1 to 643       643/643
(100 %)
6 diff
(99.1 %id)
DR003585 hippocampus .b 65 to 673 9 to 617       609/618
(98 %)
9 diff
(98.6 %id)
BC048799 Brain, adult, 6 pooled whole brains .b 66 to 3220 1 to 3153 T359V C360L S361R E362D I363F ... tiling clone, available from MGC, AAA   3153/3153
(100 %)
1 diff
(100.0 %id)
BG912972 anaplastic oligodendroglioma with 1p/19qloss, brain .b 484 to 1081 1 to 597       597/597
(100 %)
4 diff
(99.4 %id)
H17250 whole brain .b 567 to 1017 1 to 456       456/461
(98 %)
9 diff
(98.1 %id)
AL529573 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .b 588 to 1544 1 to 954       954/956
(99 %)
16 diff
(98.4 %id)
AW899728 nervous_normal .b 589 to 791 11 to 213       203/222
(91 %)
7 diff
(96.9 %id)
BG471793 eye, retinoblastoma .b 604 to 1187 1 to 598   available from MGC,   598/600
(99 %)
27 diff
(95.5 %id)
BC036711 Eye, retinoblastoma .b 605 to 3217 1 to 2613   tiling clone, available from MGC, AAA   2613/2613
(100 %)
0 diff
(100 %id)
BF948237 nervous_normal .b 636 to 1071 1 to 438       438/438
(100 %)
13 diff
(97.1 %id)
BF948410 nervous_normal .b 640 to 1044 1 to 406       406/406
(100 %)
3 diff
(99.3 %id)
BF948230 nervous_normal .b 683 to 1113 14 to 446       433/446
(97 %)
14 diff
(96.9 %id)
BF948236 nervous_normal .b 683 to 1109 26 to 454       429/454
(94 %)
15 diff
(96.7 %id)
BF948243 nervous_normal .b 683 to 1109 10 to 441       432/441
(97 %)
15 diff
(96.6 %id)
BF948282 nervous_normal .b 683 to 1107 15 to 439       425/439
(96 %)
8 diff
(98.2 %id)
BF948413 nervous_normal .b 685 to 1015 29 to 360       332/360
(92 %)
11 diff
(97.0 %id)
BF948568 nervous_normal .b 705 to 1113 36 to 450       415/450
(92 %)
8 diff
(98.3 %id)
BM925954 brain .b 902 to 1752 9 to 873       865/1196
(72 %)
43 diff
(96.5 %id)
BF948405 nervous_normal .b 913 to 1336 427 to 3       425/427
(99 %)
2 diff
(99.6 %id)
BF948239 nervous_normal .b 931 to 1365 438 to 6       433/438
(98 %)
8 diff
(98.2 %id)
BF948363 nervous_normal .b 940 to 1334 396 to 1       396/396
(100 %)
8 diff
(98.0 %id)
BF948279 nervous_normal .b 949 to 1338 392 to 2       391/392
(99 %)
2 diff
(99.5 %id)
BF948375 nervous_normal .b 952 to 1275 334 to 9       326/334
(97 %)
2 diff
(99.5 %id)
BF948374 nervous_normal .b 954 to 1329 378 to 1       378/402
(94 %)
8 diff
(98.1 %id)
AL833961 amygdala .b 1227 to 3218 1 to 1992   available from DKFZ, AAA   1992/1992
(100 %)
1 diff
(100.0 %id)
BQ717076 sympathetic trunk .b 1277 to 1929 1 to 654       654/899
(72 %)
13 diff
(98.6 %id)
AL537025 brain, fetal brain .b 1384 to 2339 1 to 954       954/957
(99 %)
6 diff
(99.4 %id)
BQ877209 ductal carcinoma, cell line, Pancreas .b 1415 to 2140 27 to 759       733/995
(73 %)
27 diff
(97.3 %id)
BQ879336 ductal carcinoma, cell line, Pancreas .b 1424 to 1863 1 to 442       442/1246
(35 %)
7 diff
(99.5 %id)
BQ686290 ductal carcinoma, cell line, Pancreas .b 1424 to 2001 1 to 578       578/947
(61 %)
1 diff
(99.9 %id)
BQ689005 ductal carcinoma, cell line, Pancreas .b 1424 to 2033 1 to 620       620/961
(64 %)
21 diff
(97.9 %id)
BU153372 large cell carcinoma, lung .b 1625 to 2387 20 to 788       769/919
(83 %)
18 diff
(98.1 %id)
AW964591   .b 1677 to 1973 1 to 297       297/297
(100 %)
15 diff
(95.0 %id)
CA392823 eye, RPE/choroid .b 1914 to 2000 1 to 87       87/87
(100 %)
0 diff
(100 %id)
BI917029 brain .b 1961 to 2745 1 to 783       783/783
(100 %)
13 diff
(98.4 %id)
TI_57242315   .b 1961 to 2745 90 to 872       783/872
(89 %)
18 diff
(98.0 %id)
AL529572 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .b 2158 to 3174 1015 to 1       1015/1162
(87 %)
30 diff
(97.5 %id)
BI964194 Islets of Langerhans, Pancreas .c 1 to 544 1 to 544 A13T     544/544
(100 %)
4 diff
(99.3 %id)
BM052938 Islets of Langerhans, Pancreas .c 1 to 572 1 to 572 exact tiling clone,   572/572
(100 %)
0 diff
(100 %id)
BE793920 lung, small cell carcinoma .c 18 to 453 45 to 480       436/481
(90 %)
8 diff
(98.4 %id)
BI197456 brain, neuroblastoma .d-u 1 to 882 14 to 893 P7H S9L A10Q T11L S12P ... tiling clone,   880/917
(95 %)
50 diff
(94.6 %id)
BE261166 brain, neuroblastoma .d-u 8 to 693 1 to 687   tiling clone,   687/709
(96 %)
11 diff
(98.5 %id)
AI124526 brain, pooled frontal lobe .d-u 771 to 1242 1 to 472   tiling clone, Submitted on the opposite strand 472/472
(100 %)
2 diff
(99.6 %id)
TI_57198993   .d-u 792 to 1547 26 to 781       756/781
(96 %)
6 diff
(99.3 %id)
BI820386 pooled brain, lung, testis .d-u 798 to 1547 1 to 750       750/750
(100 %)
4 diff
(99.5 %id)
H19527 brain .d-u 801 to 1085 1 to 287       287/348
(82 %)
3 diff
(99.2 %id)
H20383 brain .d-u 801 to 1232 1 to 444       444/444
(100 %)
20 diff
(95.5 %id)
H20397 brain .d-u 801 to 1123 1 to 323       323/323
(100 %)
0 diff
(100 %id)
BX409808 brain, fetal brain .d-u 811 to 1757 1 to 947   tiling clone,   947/949
(99 %)
11 diff
(98.9 %id)
BX409809 brain, fetal brain .d-u 812 to 1728 1 to 915       915/919
(99 %)
6 diff
(99.4 %id)
AW905041 nervous_normal .d-u 861 to 1254 9 to 402       394/403
(97 %)
5 diff
(98.8 %id)
BM716296 eye, optic nerve .d-u 867 to 1272 1 to 405   fully sequenced,   405/405
(100 %)
3 diff
(99.3 %id)
TI_151770221   .d-u 870 to 1597 119 to 839       721/1172
(61 %)
25 diff
(97.9 %id)
BF928360 nervous_tumor .d-u 895 to 1149 10 to 264       255/264
(96 %)
7 diff
(97.4 %id)
AW905096 nervous_normal .d-u 934 to 1284 1 to 352       352/352
(100 %)
4 diff
(98.9 %id)
AW905108 nervous_normal .d-u 941 to 1288 1 to 347       347/347
(100 %)
5 diff
(98.6 %id)
BE702734 nervous_normal .d-u 944 to 1163 31 to 250       220/250
(88 %)
6 diff
(97.6 %id)
H51394 brain .d-u 1097 to 1402 1 to 306       306/306
(100 %)
3 diff
(99.1 %id)
H21221 brain .d-u 1126 to 1437 1 to 314   fully sequenced,   314/314
(100 %)
8 diff
(97.5 %id)
H44150 brain .d-u 1129 to 1467 1 to 344   fully sequenced,   344/344
(100 %)
8 diff
(97.7 %id)
H46375 brain .d-u 1174 to 1504 1 to 338   fully sequenced,   338/338
(100 %)
13 diff
(96.2 %id)
BU145716 dorsal root ganglia .d-u 1182 to 1814 21 to 656       636/1039
(61 %)
5 diff
(99.6 %id)
H12802 placenta .d-u 1223 to 1491 1 to 280   fully sequenced,   280/280
(100 %)
4 diff
(98.6 %id)
BX099133 placenta .d-u 1226 to 1821 1 to 596   tiling clone,   596/597
(99 %)
2 diff
(99.7 %id)
BU733543 eye, optic nerve .d-u 1242 to 1819 594 to 17   tiling clone, fully sequenced, AAA   578/578
(100 %)
2 diff
(99.7 %id)
BQ021547 lung, Metastatic Chondrosarcoma .d-u 1252 to 1814 581 to 19   AAA   563/571
(98 %)
0 diff
(100 %id)
BM702792 eye, Retina Foveal and Macular .d-u 1252 to 1793 1 to 542       542/542
(100 %)
0 diff
(100 %id)
CB153547 brain .d-u 1290 to 1773 1 to 483       483/483
(100 %)
1 diff
(99.8 %id)
H48153 brain .d-u 1330 to 1774 431 to 1       431/431
(100 %)
13 diff
(97.0 %id)
BI755183 brain .d-u 1361 to 1817 35 to 490   AAA   456/490
(93 %)
10 diff
(98.0 %id)
TI_57215708   .d-u 1361 to 1817 35 to 490   AAA   456/490
(93 %)
6 diff
(98.8 %id)
H19455 brain .d-u 1377 to 1814 443 to 1       443/444
(99 %)
10 diff
(97.8 %id)
AI598145 anaplastic oligodendroglioma, brain .d-u 1383 to 1814 453 to 22   AAA   432/432
(100 %)
1 diff
(99.8 %id)
H19843 brain .d-u 1407 to 1817 409 to 1   fully sequenced,   409/409
(100 %)
6 diff
(98.6 %id)
AW139802   .d-u 1407 to 1817 428 to 18   AAA   411/413
(99 %)
0 diff
(100 %id)
BI040395 nervous_tumor .d-u 1421 to 1680 1 to 260       260/260
(100 %)
1 diff
(99.7 %id)
H44069 brain .d-u 1437 to 1813 383 to 1   fully sequenced,   383/383
(100 %)
8 diff
(98.0 %id)
AI302039 carcinoid, lung .d-u 1454 to 1817 383 to 20   AAA   364/364
(100 %)
2 diff
(99.5 %id)
H20205 brain .d-u 1460 to 1812 365 to 5       361/421
(85 %)
0 diff
(100 %id)
H12759 placenta .d-u 1461 to 1799 350 to 1   fully sequenced,   350/350
(100 %)
3 diff
(99.2 %id)
H48170 brain .d-u 1474 to 1772 301 to 1   fully sequenced,   301/301
(100 %)
4 diff
(98.7 %id)
BM666243 eye, fetal eyes .d-u 1475 to 1814 358 to 19   AAA   340/340
(100 %)
0 diff
(100 %id)
T15663   .d-u 1490 to 1817 330 to 1       330/335
(98 %)
10 diff
(97.1 %id)
AW136312   .d-u 1495 to 1814 337 to 18   AAA   320/330
(96 %)
0 diff
(100 %id)
D55951   .d-u 1528 to 1817 1 to 290       290/290
(100 %)
0 diff
(100 %id)
BM726615 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d-u 1559 to 1817 1 to 259   AAA   259/259
(100 %)
0 diff
(100 %id)
AA321798 brain, cerebellum .d-u 1566 to 1817 252 to 1       252/252
(100 %)
0 diff
(100 %id)
AI342002 pooled germ cell tumors .d-u 1571 to 1817 247 to 1       247/247
(100 %)
0 diff
(100 %id)
AA904128 Dorsal root ganglion, peripheral nervous system .d-u 1627 to 1817 227 to 37   AAA   191/191
(100 %)
0 diff
(100 %id)
AI962777 pooled germ cell tumors Gene SYN1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI