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Gene SYCP3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
52 supporting clones for gene SYCP3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BQ428625 testis .a 1 to 691 3 to 699   tiling clone,   699/764
(91 %)
20 diff
(97.4 %id)
NM_001177949.1   .a 1 to 1127 2 to 1128 exact RefSeq, AAA   1128/1128
(100 %)
0 diff
(100 %id)
BE972623 testis .a 49 to 686 1 to 646       643/797
(80 %)
29 diff
(96.4 %id)
AF492003   .a 59 to 903 1 to 845   tiling clone,   845/845
(100 %)
0 diff
(100 %id)
NM_153694.4   .b 1 to 1123 2 to 1124 exact RefSeq, AAA   1124/1124
(100 %)
0 diff
(100 %id)
BG723417 testis .b 2 to 673 1 to 674   tiling clone,   674/674
(100 %)
14 diff
(98.0 %id)
BU568927 testis .b 6 to 791 1 to 790       790/808
(97 %)
22 diff
(97.3 %id)
DB450324 testis .b 9 to 475 1 to 469       469/469
(100 %)
4 diff
(99.2 %id)
BC062662 testis .b 10 to 1123 6 to 1119   tiling clone, available from MGC, AAA   1114/1114
(100 %)
1 diff
(100.0 %id)
BP325878 prostata .b 10 to 590 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
NM_001177948.1   .c 1 to 1118 2 to 1119 exact RefSeq,   1119/1119
(100 %)
5 diff
(99.6 %id)
BI459218 testis .c 5 to 780 1 to 782       780/859
(90 %)
32 diff
(96.3 %id)
BU165769 testis .c 7 to 698 1 to 694       694/757
(91 %)
21 diff
(97.3 %id)
BU852431 testis .c 7 to 660 1 to 659   tiling clone,   659/829
(79 %)
12 diff
(98.6 %id)
AF517774   .c 46 to 1113 1 to 1068   tiling clone,   1068/1073
(99 %)
1 diff
(100.0 %id)
BE938896 testis_normal .c 111 to 706 597 to 3       595/597
(99 %)
8 diff
(98.7 %id)
BF377277 testis_normal .c 111 to 691 582 to 4       579/582
(99 %)
14 diff
(97.6 %id)
AF012378 testis .c 233 to 472 1 to 239       239/239
(100 %)
3 diff
(98.8 %id)
AI075991   .c 373 to 1113 742 to 3       740/742
(99 %)
6 diff
(99.2 %id)
BG201028   .c 571 to 1112 1 to 539   AAA   537/539
(99 %)
12 diff
(97.8 %id)
BG202574   .c 571 to 1112 1 to 544   AAA   544/544
(100 %)
12 diff
(97.8 %id)
BG191294   .c 578 to 1112 11 to 543   AAA   532/543
(97 %)
7 diff
(98.8 %id)
BG207820   .c 580 to 1112 8 to 539   AAA   532/539
(98 %)
7 diff
(98.8 %id)
BG212523   .c 580 to 1112 8 to 539   AAA   532/539
(98 %)
8 diff
(98.6 %id)
BG215085   .c 580 to 1112 8 to 539   AAA   532/539
(98 %)
6 diff
(98.9 %id)
BG201396   .c 592 to 905 28 to 345       318/345
(92 %)
7 diff
(98.0 %id)
BG189124   .c 596 to 1112 28 to 543   AAA   516/543
(95 %)
7 diff
(98.8 %id)
AI285929 pooled .c 646 to 1113 473 to 6       468/473
(98 %)
0 diff
(100 %id)
BG200934   .c 670 to 1102 1 to 429       427/446
(95 %)
12 diff
(97.4 %id)
BG204017   .c 670 to 1101 1 to 429       427/447
(95 %)
16 diff
(96.5 %id)
BG221221   .c 676 to 1102 434 to 10     Submitted on the opposite strand 425/436
(97 %)
4 diff
(99.1 %id)
AI015251   .c 683 to 1113 434 to 5       430/435
(98 %)
11 diff
(97.5 %id)
CR748999 testis .c 698 to 1112 461 to 47   AAA Submitted on the opposite strand 415/415
(100 %)
1 diff
(99.8 %id)
FN079771 breast carcinoma .c 805 to 891 1 to 88       88/88
(100 %)
1 diff
(98.9 %id)
AA971665 pooled .c 861 to 1113 255 to 3       253/255
(99 %)
0 diff
(100 %id)
AI214984   .c 861 to 1113 255 to 3       253/255
(99 %)
0 diff
(100 %id)
BU568620 testis .d 1 to 678 1 to 694   tiling clone,   694/851
(81 %)
29 diff
(96.6 %id)
BG202454   .d 575 to 1235 12 to 671   tiling clone, AAA   658/671
(98 %)
7 diff
(99.0 %id)
EC457505 Prostate .d 815 to 923 1 to 109       109/109
(100 %)
4 diff
(96.4 %id)
AK125930 testis .e 1 to 3688 2 to 3686 exact tiling clone, available from FLJ, AAA   3686/3686
(100 %)
4 diff
(99.9 %id)
DB071453 testis .e 1 to 552 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
AL045184 testis .e 2245 to 2730 1 to 486       486/494
(98 %)
1 diff
(99.8 %id)
TI_57176622   .e 2294 to 2720 23 to 447       425/582
(73 %)
6 diff
(99.0 %id)
BI830069 brain, medulla .e 2304 to 2720 1 to 415       415/550
(75 %)
6 diff
(99.0 %id)
CV379770 marrow .e 2348 to 2624 297 to 24     Submitted on the opposite strand 274/297
(92 %)
0 diff
(100 %id)
DB459017.
matches multiple genes
testis .e 2437 to 2918 1 to 482     also hits gene CHPT1 482/482
(100 %)
1 diff
(99.8 %id)
AW904809 nervous_normal .e 2489 to 2915 436 to 11       426/445
(95 %)
0 diff
(100 %id)
DB340214 testis .e 3134 to 3688 557 to 1       557/557
(100 %)
2 diff
(99.7 %id)
DA569666 whole embryo, mainly head .f-u 1 to 862 2 to 864 exact tiling clone, capped   863/864
(99 %)
10 diff
(98.9 %id)
AW972555   .g-u 1 to 585 1 to 585 C23F tiling clone,   585/587
(99 %)
4 diff
(99.4 %id)
EC564991 Prostate Gene SYCP3, variant not shown         This clone was ignored    
BF925615 nervous_tumor Gene SYCP3, variant not shown         This clone was ignored    
AW886370 ovary Gene SYCP3, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI