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Gene SYCNTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
60 supporting clones for gene SYCN back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC121075 PCR rescued clones .a 1 to 486 1 to 486 exact tiling clone,   486/486
(100 %)
3 diff
(99.4 %id)
BC121076 PCR rescued clones .a 1 to 486 1 to 486 exact     486/486
(100 %)
3 diff
(99.4 %id)
NM_001080468.2   .a 5 to 486 1 to 482 exact RefSeq,   482/482
(100 %)
0 diff
(100 %id)
TI_57163167   .a 12 to 575 24 to 586 S2V AAA   563/586
(96 %)
6 diff
(99.0 %id)
TI_57165325   .a 12 to 558 24 to 568 A14P S15P V16C P17L C18A ...     545/568
(95 %)
11 diff
(98.1 %id)
TI_57165419   .a 12 to 575 29 to 597 A19C Q20P A22C C23L A25R ...     569/916
(62 %)
7 diff
(99.3 %id)
BI832751 pooled pancreas and spleen .a 13 to 149 1 to 135       135/135
(100 %)
8 diff
(94.1 %id)
TI_57162375   .a 13 to 576 1 to 564 P3R L4C R5A P6A L7A ...     564/674
(83 %)
12 diff
(98.3 %id)
TI_57164546   .a 15 to 573 27 to 584 S2D A14P S15P V16C P17L ...     558/724
(77 %)
8 diff
(98.9 %id)
BM091222 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .a 16 to 415 1 to 400       400/400
(100 %)
4 diff
(99.0 %id)
AK130951 Pancreas .a 17 to 574 24 to 581 exact available from FLJ,   558/558
(100 %)
0 diff
(100 %id)
BI838164 pooled pancreas and spleen .a 18 to 149 1 to 132       132/132
(100 %)
2 diff
(98.5 %id)
TI_57163300   .a 18 to 557 35 to 576       542/734
(73 %)
9 diff
(98.8 %id)
BI837716 pooled pancreas and spleen .a 19 to 147 1 to 130       130/133
(97 %)
4 diff
(97.0 %id)
BI837764 pooled pancreas and spleen .a 19 to 149 1 to 129       129/129
(100 %)
2 diff
(98.5 %id)
BC039541 Pancreas, Spleen, adult pooled .a 19 to 577 1 to 559   tiling clone, available from MGC, AAA   559/559
(100 %)
0 diff
(100 %id)
CA777117 Pancreas, Purified pancreatic islet .a 19 to 560 11 to 552   fully sequenced,   542/552
(98 %)
8 diff
(98.6 %id)
AW600300 Pancreas .a 20 to 575 1 to 556       556/556
(100 %)
0 diff
(100 %id)
BI837815 pooled pancreas and spleen .a 20 to 149 1 to 130       130/130
(100 %)
2 diff
(98.5 %id)
BI833982 pooled pancreas and spleen .a 20 to 149 1 to 130       130/130
(100 %)
4 diff
(97.0 %id)
BM919811 pooled pancreas and spleen .a 20 to 577 1 to 558   available from MGC,   558/585
(95 %)
1 diff
(99.9 %id)
TI_57166301   .a 20 to 575 30 to 584   AAA   555/584
(95 %)
6 diff
(99.0 %id)
TI_57166368   .a 20 to 575 67 to 626       560/1035
(54 %)
15 diff
(98.6 %id)
BI835878 pooled pancreas and spleen .a 21 to 149 1 to 128       128/128
(100 %)
1 diff
(99.3 %id)
BI835127 pooled pancreas and spleen .a 21 to 575 1 to 554   AAA   554/554
(100 %)
1 diff
(99.9 %id)
BI837525 pooled pancreas and spleen .a 22 to 557 1 to 550       550/732
(75 %)
19 diff
(97.5 %id)
TI_57165738   .a 22 to 557 37 to 586       550/768
(71 %)
10 diff
(98.7 %id)
BI834074 pooled pancreas and spleen .a 23 to 149 1 to 126       126/126
(100 %)
2 diff
(98.5 %id)
BI832912 pooled pancreas and spleen .a 24 to 574 1 to 537   AAA   537/537
(100 %)
15 diff
(97.3 %id)
TI_57168459   .a 24 to 574 53 to 589   tiling clone, AAA   537/589
(91 %)
9 diff
(98.5 %id)
BE969669 Pancreas .a 30 to 575 1 to 543   AAA   543/543
(100 %)
3 diff
(99.5 %id)
BI832482 pooled pancreas and spleen .a 33 to 149 1 to 116       116/116
(100 %)
1 diff
(99.2 %id)
TI_57162195   .a 33 to 575 62 to 603       542/604
(89 %)
7 diff
(98.9 %id)
BE045769 Pancreas .a 36 to 583 550 to 3       548/551
(99 %)
1 diff
(99.9 %id)
AA367324 Pancreas .a 54 to 245 1 to 192       192/192
(100 %)
3 diff
(98.5 %id)
TI_57168005   .a 54 to 575 25 to 547   AAA   523/668
(78 %)
9 diff
(98.7 %id)
TI_57164836   .a 57 to 576 23 to 544   AAA   522/544
(95 %)
6 diff
(98.9 %id)
BI835910 pooled pancreas and spleen .a 64 to 147 1 to 84       84/87
(96 %)
2 diff
(97.8 %id)
BI834863 pooled pancreas and spleen .a 64 to 149 1 to 86       86/86
(100 %)
2 diff
(97.7 %id)
BI838241 pooled pancreas and spleen .a 66 to 576 1 to 510       510/540
(94 %)
3 diff
(99.5 %id)
BX088921   .a 120 to 574 1 to 455   AAA   455/455
(100 %)
0 diff
(100 %id)
AA824393   .a 125 to 576 466 to 15   AAA   452/452
(100 %)
5 diff
(98.9 %id)
AW004051 pooled germ cell tumors .a 129 to 574 447 to 2       446/447
(99 %)
0 diff
(100 %id)
TI_57167409   .a 142 to 577 30 to 465   AAA   436/465
(93 %)
6 diff
(98.8 %id)
AW583863 Islets of Langerhans, Pancreas .a 143 to 406 1 to 264       264/264
(100 %)
12 diff
(95.5 %id)
AW583027 Islets of Langerhans, Pancreas .a 143 to 415 1 to 273       273/273
(100 %)
3 diff
(99.0 %id)
AW583196 Islets of Langerhans, Pancreas .a 145 to 415 1 to 271       271/271
(100 %)
6 diff
(97.8 %id)
AA812593   .a 154 to 574 431 to 12   AAA   420/420
(100 %)
5 diff
(98.9 %id)
BU069542 insulinoma, Pancreas .a 201 to 574 8 to 381   fully sequenced, AAA   374/381
(98 %)
6 diff
(98.5 %id)
BU579945 insulinoma, Pancreas .a 209 to 574 1 to 366       366/366
(100 %)
5 diff
(98.7 %id)
BM509454 insulinoma, Pancreas .a 225 to 574 1 to 350   AAA   350/350
(100 %)
4 diff
(98.9 %id)
BM894428 insulinoma, Pancreas .a 225 to 574 1 to 350   AAA   350/350
(100 %)
4 diff
(98.9 %id)
BQ270374 insulinoma, Pancreas .a 225 to 574 1 to 350       350/350
(100 %)
4 diff
(98.9 %id)
AA845110 Pancreas .a 276 to 577 314 to 13   AAA   302/302
(100 %)
0 diff
(100 %id)
AI200988   .a 290 to 575 309 to 24   AAA   286/286
(100 %)
5 diff
(98.3 %id)
BM509208 insulinoma, Pancreas .a 298 to 574 307 to 31   AAA   277/277
(100 %)
4 diff
(98.6 %id)
AA835130 Pancreas .a 337 to 575 247 to 9       239/248
(96 %)
0 diff
(100 %id)
AW290955   .a 470 to 575 127 to 18   AAA   110/117
(94 %)
7 diff
(94.1 %id)
CA776833 Pancreas, Purified pancreatic islet .a 471 to 575 105 to 1   fully sequenced,   105/105
(100 %)
1 diff
(99.1 %id)
BU069337 insulinoma, Pancreas .a 478 to 574 112 to 16   fully sequenced, AAA   97/97
(100 %)
0 diff
(100 %id)
TI_57164306   .b 1 to 555 39 to 592 S2V G21A tiling clone,   554/795
(69 %)
9 diff
(98.9 %id)
TI_57162878   Gene SYCN, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C