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Gene ZNF280BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
98 supporting clones for gene ZNF280B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK097608 testis .a 1 to 2474 2 to 2475 I244V E256A tiling clone, available from FLJ,   2475/2475
(100 %)
4 diff
(99.9 %id)
NM_080764.2   .a 1 to 5732 2 to 5733 exact RefSeq,   5733/5733
(100 %)
0 diff
(100 %id)
DB041148 testis .a 1 to 422 2 to 423   capped   422/422
(100 %)
0 diff
(100 %id)
DB044954 testis .a 1 to 477 2 to 478   capped   477/477
(100 %)
0 diff
(100 %id)
DB059907 testis .a 1 to 538 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
DB450854 testis .a 12 to 487 1 to 476       476/476
(100 %)
1 diff
(99.8 %id)
DB459275 testis .a 12 to 483 1 to 472       472/472
(100 %)
0 diff
(100 %id)
TI_57171541   .a 22 to 755 92 to 819       728/819
(88 %)
7 diff
(99.2 %id)
BI828153 brain, medulla .a 23 to 755 2 to 730       729/730
(99 %)
11 diff
(98.5 %id)
DB042360 testis .a 34 to 568 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DB452355 testis .a 39 to 523 1 to 485       485/485
(100 %)
1 diff
(99.8 %id)
DB459580 testis .a 68 to 542 1 to 475       475/475
(100 %)
1 diff
(99.8 %id)
DB044579 testis .a 222 to 762 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
BG772710 testis .a 349 to 1184 1 to 837       837/837
(100 %)
25 diff
(97.1 %id)
DB448084 testis .a 379 to 814 1 to 435       435/435
(100 %)
2 diff
(99.6 %id)
CN265813 embryonic stem cells, cell lines H1, H7, andH9 .a 400 to 880 9 to 490       482/490
(98 %)
11 diff
(97.8 %id)
DB444949 testis .a 429 to 750 1 to 329       329/337
(97 %)
24 diff
(92.9 %id)
BX492870   .a 436 to 777 1 to 342       342/342
(100 %)
2 diff
(99.5 %id)
DB461858 testis .a 446 to 923 1 to 478       478/478
(100 %)
1 diff
(99.8 %id)
DB034475 testis .a 446 to 1017 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BQ219363 leiomyosarcoma, uterus .a 454 to 1206 27 to 779       753/988
(76 %)
12 diff
(98.8 %id)
CR456614   .a 724 to 2418 1 to 1695 E256A tiling clone,   1695/1695
(100 %)
3 diff
(99.9 %id)
CU013499 Synthetic constructs .a 769 to 2404 12 to 1648       1637/1663
(98 %)
7 diff
(99.6 %id)
CU013211 Synthetic constructs .a 769 to 2408 12 to 1651 E256A     1640/1666
(98 %)
7 diff
(99.6 %id)
DB022000 testis .a 795 to 1286 7 to 502   capped   496/501
(99 %)
6 diff
(98.9 %id)
BP370090 testis .a 1206 to 1752 18 to 551       534/551
(96 %)
22 diff
(96.1 %id)
N39816 melanocyte .a 1659 to 2087 1 to 437   fully sequenced,   437/437
(100 %)
6 diff
(98.7 %id)
BX093302 melanocyte .a 1662 to 2467 1 to 809   AAA   809/809
(100 %)
3 diff
(99.7 %id)
AW663885 pooled .a 1895 to 2470 576 to 1       576/576
(100 %)
0 diff
(100 %id)
DB336022 testis .a 1897 to 2462 566 to 1       566/566
(100 %)
1 diff
(99.9 %id)
AI279346 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1898 to 2461 564 to 1       564/564
(100 %)
1 diff
(99.9 %id)
DB337849 testis .a 1937 to 2474 538 to 1       538/538
(100 %)
1 diff
(99.9 %id)
BE503263 pooled germ cell tumors .a 1972 to 2396 425 to 1       425/430
(98 %)
25 diff
(94.2 %id)
AI015003   .a 1973 to 2562 592 to 3   tiling clone,   590/592
(99 %)
0 diff
(100 %id)
BE501238 pooled germ cell tumors .a 1982 to 2473 494 to 3       492/494
(99 %)
0 diff
(100 %id)
AI126068   .a 1991 to 2467 491 to 15   AAA   477/477
(100 %)
2 diff
(99.6 %id)
DB525032 testis .a 1992 to 2467 1 to 476     Submitted on the opposite strand 476/476
(100 %)
1 diff
(99.8 %id)
AA693959 liver and spleen .a 1994 to 2462 468 to 1       468/468
(100 %)
2 diff
(99.6 %id)
DB516932 testis .a 2007 to 2467 1 to 461     Submitted on the opposite strand 461/461
(100 %)
1 diff
(99.8 %id)
DB522671 testis .a 2012 to 2467 1 to 456     Submitted on the opposite strand 456/456
(100 %)
2 diff
(99.6 %id)
DB516341 testis .a 2013 to 2465 1 to 453     Submitted on the opposite strand 453/455
(99 %)
2 diff
(99.6 %id)
DB509929 testis .a 2026 to 2467 1 to 442     Submitted on the opposite strand 442/442
(100 %)
4 diff
(99.1 %id)
DB517890 testis .a 2034 to 2467 1 to 434     Submitted on the opposite strand 434/434
(100 %)
1 diff
(99.8 %id)
DB508247 testis .a 2051 to 2467 1 to 416     Submitted on the opposite strand 416/416
(100 %)
2 diff
(99.6 %id)
N26665 melanocyte .a 2057 to 2462 406 to 1   fully sequenced,   406/406
(100 %)
0 diff
(100 %id)
DB527278 testis .a 2096 to 2467 1 to 372     Submitted on the opposite strand 372/372
(100 %)
3 diff
(99.2 %id)
AA923227 pooled .a 2143 to 2471 329 to 1   tiling clone,   329/329
(100 %)
0 diff
(100 %id)
DB509812 testis .a 2168 to 2467 1 to 300     Submitted on the opposite strand 300/300
(100 %)
9 diff
(97.0 %id)
DB513265 testis .a 2192 to 2467 1 to 276     Submitted on the opposite strand 276/276
(100 %)
8 diff
(97.2 %id)
AA333348 Embryo, 8 weeks .a 2976 to 3244 1 to 269   tiling clone,   269/269
(100 %)
0 diff
(100 %id)
DA167837 amygdala .a 3034 to 3596 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
CB156631 brain .a 3084 to 3676 1 to 593   tiling clone,   593/593
(100 %)
0 diff
(100 %id)
DA298645 hippocampus .a 3220 to 3790 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
CN284103 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 3618 to 4345 1 to 728   tiling clone,   728/728
(100 %)
4 diff
(99.5 %id)
N76481 multiple sclerosis lesions .a 3683 to 4168 1 to 492       492/495
(99 %)
13 diff
(97.4 %id)
BQ221117 melanotic melanoma, skin .a 3773 to 4522 1 to 757   tiling clone,   757/931
(81 %)
9 diff
(99.1 %id)
H98038 melanocyte .a 4015 to 4562 1 to 554       554/554
(100 %)
16 diff
(97.2 %id)
AW976198   .a 4230 to 4852 639 to 17   tiling clone, Submitted on the opposite strand 623/639
(97 %)
0 diff
(100 %id)
N43771 melanocyte .a 4231 to 4433 1 to 207       207/207
(100 %)
5 diff
(97.6 %id)
AW376443 colon .a 4280 to 4758 1 to 484       484/484
(100 %)
5 diff
(99.0 %id)
AW376464 colon .a 4300 to 4777 1 to 482       482/483
(99 %)
5 diff
(99.0 %id)
AI911505 pooled .a 4386 to 4852 489 to 23   tiling clone,   467/489
(95 %)
0 diff
(100 %id)
N31273 melanocyte .a 4489 to 4880 1 to 392   fully sequenced,   392/392
(100 %)
0 diff
(100 %id)
BE779449 eye, retinoblastoma .a 4537 to 5301 1 to 754       754/819
(92 %)
16 diff
(98.1 %id)
BX108144 parathyroid gland, parathyroid tumor .a 4543 to 5006 1 to 464   tiling clone,   464/464
(100 %)
1 diff
(99.8 %id)
AA737071 germinal center B cell .a 4564 to 4852 322 to 34       289/322
(89 %)
0 diff
(100 %id)
W31789 parathyroid gland, parathyroid tumor .a 4581 to 4970 1 to 391       391/391
(100 %)
2 diff
(99.5 %id)
BG703393 brain, hippocampus .a 4634 to 5301 1 to 668   available from MGC,   668/676
(98 %)
9 diff
(98.7 %id)
BC035376 Brain, hippocampus .a 4638 to 5280 1 to 643   available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 643/644
(99 %)
4 diff
(99.4 %id)
AA743496 germinal center B cell .a 4684 to 4852 202 to 34       169/202
(83 %)
0 diff
(100 %id)
AW847873 colon .a 4724 to 5215 492 to 1       492/492
(100 %)
4 diff
(99.2 %id)
BF793432 adrenal cortex carcinoma, cell line, adrenal gland .a 4759 to 5480 1 to 722       722/845
(85 %)
29 diff
(96.6 %id)
BG701279 brain, hippocampus .a 4765 to 5395 1 to 634   available from MGC,   634/634
(100 %)
10 diff
(98.5 %id)
BC042370 Brain, hippocampus .a 4770 to 5723 1 to 954   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 954/956
(99 %)
4 diff
(99.6 %id)
AW173330 pooled .a 4795 to 5267 473 to 1       473/473
(100 %)
2 diff
(99.6 %id)
N22886 melanocyte .a 4850 to 5283 434 to 1   fully sequenced,   434/434
(100 %)
6 diff
(98.7 %id)
N59377 multiple sclerosis lesions .a 4850 to 5282 433 to 1       433/433
(100 %)
2 diff
(99.6 %id)
AI400329 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4854 to 5282 429 to 1       429/429
(100 %)
2 diff
(99.6 %id)
N36258 melanocyte .a 4870 to 5281 413 to 1       413/413
(100 %)
3 diff
(99.3 %id)
AA760995 pooled germ cell tumors .a 4870 to 5281 412 to 1       412/412
(100 %)
2 diff
(99.6 %id)
N35016 melanocyte .a 4871 to 5281 410 to 1       410/410
(100 %)
4 diff
(99.1 %id)
H97336 melanocyte .a 4902 to 5281 388 to 1   tiling clone,   388/391
(99 %)
12 diff
(97.0 %id)
BQ376028 testis_normal .a 4905 to 5127 10 to 232       223/232
(96 %)
6 diff
(97.5 %id)
DB307922 hippocampus .a 5184 to 5725 542 to 1       542/542
(100 %)
2 diff
(99.7 %id)
AI015954   .a 5262 to 5728 468 to 1       468/468
(100 %)
5 diff
(99.0 %id)
AI138800   .a 5267 to 5729 463 to 1       463/463
(100 %)
1 diff
(99.8 %id)
AW104458 pooled .a 5267 to 5728 463 to 1       463/463
(100 %)
2 diff
(99.6 %id)
AA868010 pooled .a 5281 to 5728 448 to 1       448/448
(100 %)
2 diff
(99.6 %id)
AA922139 pooled .a 5296 to 5731 436 to 1   tiling clone,   436/436
(100 %)
1 diff
(99.8 %id)
AI688190 colon .a 5297 to 5723 430 to 4   tiling clone,   427/430
(99 %)
0 diff
(100 %id)
W04687 parathyroid gland, parathyroid tumor .a 5311 to 5725 419 to 1       419/419
(100 %)
5 diff
(98.9 %id)
BM738648 stomach .a 5384 to 5495 1 to 113       113/113
(100 %)
5 diff
(95.6 %id)
AI207086   .a 5397 to 5728 333 to 1       333/333
(100 %)
2 diff
(99.4 %id)
AW021601 cochlea, ear .a 5402 to 5725 25 to 348   fully sequenced, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 324/348
(93 %)
6 diff
(98.3 %id)
BI492558 cochlea, ear .a 5445 to 5722 278 to 1   fully sequenced, Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 278/278
(100 %)
0 diff
(100 %id)
AI352239   .a 5458 to 5725 279 to 12   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 268/268
(100 %)
6 diff
(97.8 %id)
AW148912 Kidney, renal cell tumor .a 5537 to 5725 211 to 23   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 189/189
(100 %)
7 diff
(96.3 %id)
BC040020 Uterus, leiomyosarcoma .b 1 to 3945 1 to 3959 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 3959/3959
(100 %)
20 diff
(99.5 %id)
DB046976 testis .c 1 to 549 2 to 550   tiling clone, capped   549/549
(100 %)
2 diff
(99.7 %id)
BI523641 pooled lung and spleen .c 386 to 1194 1 to 814 R71T S72* tiling clone,   814/814
(100 %)
9 diff
(98.9 %id)
TI_44159168   .c 386 to 1194 61 to 874 R71T S72*     814/874
(93 %)
15 diff
(98.3 %id)
BI561244 testis .d 1 to 819 1 to 822 exact tiling clone,   822/824
(99 %)
22 diff
(97.4 %id)
TI_44348923   .d 5 to 819 86 to 903 exact     818/905
(90 %)
22 diff
(97.6 %id)
DB451461 testis .d 97 to 588 1 to 492 exact tiling clone,   492/492
(100 %)
0 diff
(100 %id)
CB133948 Liver .e-u 1 to 552 1 to 550 exact tiling clone,   550/550
(100 %)
4 diff
(99.3 %id)
CB158626 Liver .e-u 1 to 514 1 to 512 exact     512/512
(100 %)
4 diff
(99.3 %id)
DB457220 testis .f 1 to 494 1 to 494 P30R tiling clone,   494/494
(100 %)
3 diff
(99.4 %id)
DB443331 testis .g 1 to 446 2 to 447 T41K P69H P70H F71S R72G ... tiling clone,   447/447
(100 %)
4 diff
(99.2 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C