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Gene STXBP4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
64 supporting clones for gene STXBP4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DR001132 fetal brain .a -11 to 701 1 to 713       713/713
(100 %)
6 diff
(99.2 %id)
CF993836 Human Placenta, placenta .a 1 to 691 29 to 719       696/856
(81 %)
8 diff
(99.1 %id)
AK122865 tongue, tumor tissue .a 1 to 5787 2 to 5788 G92R tiling clone, available from FLJ,   5788/5788
(100 %)
4 diff
(100.0 %id)
NM_178509.5   .a 1 to 6045 2 to 6046 exact RefSeq,   6046/6046
(100 %)
0 diff
(100 %id)
DA459668 tongue, tumor tissue .a 1 to 568 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BX951796   .a 13 to 374 1 to 363       363/363
(100 %)
8 diff
(97.8 %id)
DR005906 Prostate .a 72 to 630 1 to 559       559/560
(99 %)
4 diff
(99.3 %id)
FN081324 breast carcinoma .a 1023 to 1094 1 to 72       72/72
(100 %)
5 diff
(93.1 %id)
CA429281 Cell Line, Chondrosarcoma .a 1503 to 2146 660 to 17   AAA   644/644
(100 %)
0 diff
(100 %id)
BU618480 Cell Line, Chondrosarcoma .a 1514 to 2146 648 to 17   AAA   632/632
(100 %)
1 diff
(99.9 %id)
DA806409 brain .a 1863 to 2431 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
BF530080 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1918 to 2516 13 to 611       599/611
(98 %)
6 diff
(99.1 %id)
AK123793   .a 2203 to 4527 1 to 2325   tiling clone, available from FLJ,   2325/2325
(100 %)
3 diff
(99.9 %id)
DA679180   .a 2204 to 2737 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
AA334060   .a 2303 to 2547 245 to 1     Submitted on the opposite strand 245/245
(100 %)
0 diff
(100 %id)
CV382424 colon_est .a 2516 to 2765 262 to 2     Submitted on the opposite strand 261/262
(99 %)
11 diff
(95.9 %id)
BX502389 Liver .a 2962 to 3462 9 to 510       502/510
(98 %)
6 diff
(98.9 %id)
CD644143 Embryonic Stem cells .a 3056 to 3824 6 to 769       764/837
(91 %)
20 diff
(97.7 %id)
CR590425 HeLa cells Cot 25-normalized .a 3650 to 6253 1 to 2604   tiling clone,   2604/2604
(100 %)
0 diff
(100 %id)
BX384500   .a 3650 to 4563 1 to 911       911/979
(93 %)
6 diff
(99.4 %id)
DA829249 placenta .a 3922 to 4533 2 to 613   capped   612/613
(99 %)
1 diff
(99.9 %id)
DB322500   .a 3972 to 4527 556 to 1       556/556
(100 %)
0 diff
(100 %id)
CN271725 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 4165 to 4908 1 to 743       743/743
(100 %)
6 diff
(99.2 %id)
BF982448 duodenal adenocarcinoma, cell line, small intestine .a 4384 to 5063 1 to 689       689/1109
(62 %)
48 diff
(95.7 %id)
BU945624 mixed (pool of 40 RNAs) .a 4431 to 4854 1 to 421       421/462
(91 %)
8 diff
(98.3 %id)
BQ189012 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4435 to 4955 1 to 520       520/552
(94 %)
3 diff
(99.5 %id)
BX349162   .a 4473 to 5269 1 to 803       803/917
(87 %)
19 diff
(98.0 %id)
DA646063 mammary gland .a 4490 to 5269 2 to 779   capped   778/778
(100 %)
3 diff
(99.7 %id)
BE856462 Prostate .a 4526 to 4844 332 to 14   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 319/320
(99 %)
1 diff
(99.7 %id)
AI376134   .a 4587 to 5007 446 to 26   AAA   421/428
(98 %)
0 diff
(100 %id)
AI445192 colon, moderately-differentiated adenocarcinoma .a 4592 to 4954 363 to 1       363/363
(100 %)
6 diff
(98.4 %id)
D63113.
matches multiple genes
  .a 4659 to 4954 296 to 1     also hits gene lerstawby 296/296
(100 %)
2 diff
(99.4 %id)
BI868797 adenocarcinoma, cell line, Liver .a 4863 to 5603 1 to 745       745/745
(100 %)
32 diff
(95.8 %id)
TI_57227692   .a 4863 to 5603 50 to 794       745/745
(100 %)
32 diff
(95.8 %id)
BE904560 epithelioid carcinoma, Pancreas .a 5133 to 5803 707 to 3     Submitted on the opposite strand 705/860
(81 %)
0 diff
(100 %id)
CD357098 Blood vessels - aorta, basilar and artery .a 5134 to 5781 1 to 661       661/771
(85 %)
26 diff
(96.7 %id)
BU686235 lung, Primary Lung Epithelial Cells .a 5173 to 5805 634 to 1       634/635
(99 %)
10 diff
(98.5 %id)
TI_149306165   .a 5176 to 5785 701 to 91   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 611/964
(63 %)
1 diff
(99.9 %id)
CA310959 Human Lung Epithelial cells, lung .a 5176 to 5805 628 to 1       628/661
(95 %)
4 diff
(99.4 %id)
BX387029   .a 5179 to 6124 1 to 942       942/943
(99 %)
25 diff
(97.4 %id)
DB314507 tongue, tumor tissue .a 5223 to 5787 565 to 1       565/565
(100 %)
0 diff
(100 %id)
AW243204 Kidney .a 5422 to 5785 364 to 1       364/364
(100 %)
5 diff
(98.7 %id)
CA848494 Pancreas, Purified pancreatic islet .a 5426 to 5750 4 to 328   fully sequenced,   325/328
(99 %)
5 diff
(98.5 %id)
TI_149279759   .a 5436 to 6241 857 to 55   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 803/1101
(72 %)
36 diff
(96.8 %id)
AA952876 pooled .a 5438 to 5794 357 to 1       357/357
(100 %)
0 diff
(100 %id)
EB387335 eye, optic nerve .a 5514 to 6235 1 to 722       722/722
(100 %)
0 diff
(100 %id)
BX352529   .a 5569 to 6249 680 to 4       677/881
(76 %)
0 diff
(100 %id)
TI_149278122   .a 5590 to 6241 773 to 121   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 653/654
(99 %)
5 diff
(99.3 %id)
BU678229 lung .a 5610 to 6241 651 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 633/633
(100 %)
5 diff
(99.3 %id)
DB373990 placenta .a 5637 to 6241 593 to 1       593/593
(100 %)
23 diff
(96.2 %id)
BM969750 lung, Primary Lung Epithelial Cells .a 5682 to 6241 581 to 19   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 563/563
(100 %)
7 diff
(98.8 %id)
CA848207 Pancreas, Purified pancreatic islet .a 5720 to 6240 521 to 1   fully sequenced,   521/521
(100 %)
0 diff
(100 %id)
AI095537 uterus .a 5777 to 6242 467 to 1       467/467
(100 %)
2 diff
(99.6 %id)
AW237225 pooled germ cell tumors .a 5779 to 6240 467 to 4       464/467
(99 %)
0 diff
(100 %id)
AI126515 uterus .a 5806 to 6242 437 to 1       437/437
(100 %)
1 diff
(99.8 %id)
AI700107 pooled germ cell tumors .a 5848 to 6242 396 to 1       396/396
(100 %)
3 diff
(99.3 %id)
AI700099 pooled germ cell tumors .a 5883 to 6242 363 to 1       363/363
(100 %)
4 diff
(98.9 %id)
BC125116 PCR rescued clones .b 1 to 2807 1 to 2807 G92R A483T tiling clone,   2807/2807
(100 %)
5 diff
(99.9 %id)
BC041485 Eye, retinoblastoma .c 1 to 2160 1 to 2160 exact tiling clone, available from MGC, AAA   2160/2160
(100 %)
1 diff
(100.0 %id)
BM462097 eye, retinoblastoma .c 1 to 619 13 to 635   available from MGC,   623/977
(63 %)
15 diff
(98.5 %id)
BM709250 eye, optic nerve .c 1148 to 1591 1 to 444   fully sequenced,   444/444
(100 %)
4 diff
(99.1 %id)
BU732401 eye, optic nerve .c 1561 to 2156 617 to 22   fully sequenced,   596/617
(96 %)
6 diff
(99.1 %id)
AA652491   .d 1 to 423 423 to 1 exact tiling clone,   423/423
(100 %)
0 diff
(100 %id)
BG655030 Pancreas, Purified pancreatic islet .e 1 to 556 11 to 565   tiling clone,   555/565
(98 %)
6 diff
(99.0 %id)
BG654411 Pancreas, Purified pancreatic islet .e 144 to 683 539 to 1 E2D H4L Q5L A6S D23E ... tiling clone, Submitted on the opposite strand 539/542
(99 %)
25 diff
(95.4 %id)
BX382851   .f 1 to 1026 1 to 1021 exact     1021/1022
(99 %)
19 diff
(98.2 %id)
CR593155 T cells (Jurkat cell line) Cot10-normalized .f 2 to 1175 1 to 1174 exact tiling clone,   1174/1174
(100 %)
0 diff
(100 %id)
BX349079   .f 761 to 1175 1 to 415       415/415
(100 %)
1 diff
(99.8 %id)
CD699518 normal nasopharynx .g 1 to 367 128 to 493 exact tiling clone,   370/493
(75 %)
7 diff
(98.6 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI