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Gene STRN3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
142 supporting clones for gene STRN3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB214393 trachea .a 1 to 558 2 to 559   tiling clone, capped   558/558
(100 %)
3 diff
(99.5 %id)
DB215800 trachea .a 1 to 528 2 to 530   capped   529/529
(100 %)
2 diff
(99.7 %id)
DA854600 placenta .a 126 to 686 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
NM_001083893.1   .a 127 to 4348 1 to 4222 exact RefSeq, AAA   4222/4222
(100 %)
0 diff
(100 %id)
DB195660 trachea .a 133 to 519 2 to 388   capped   387/387
(100 %)
0 diff
(100 %id)
DA505064 brain .a 142 to 704 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA416643 thalamus .a 150 to 697 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB214259 trachea .a 162 to 729 2 to 569   capped   568/572
(99 %)
3 diff
(99.5 %id)
DR000572 fetal brain .a 173 to 805 29 to 661       633/661
(95 %)
6 diff
(99.1 %id)
TI_1520872509   .a 202 to 621 238 to 658     Submitted on the opposite strand 421/720
(58 %)
25 diff
(96.6 %id)
TI_1520874259   .a 202 to 1193 43 to 1038       996/1227
(81 %)
15 diff
(98.8 %id)
TI_2194628812   .a 202 to 1318 40 to 1146   tiling clone,   1107/1268
(87 %)
19 diff
(98.6 %id)
TI_2194631055   .a 202 to 1192 44 to 1029       986/1176
(83 %)
13 diff
(98.9 %id)
AA358216 lung .a 532 to 825 1 to 294       294/294
(100 %)
0 diff
(100 %id)
BQ326695 colon_normal .a 623 to 729 106 to 2       105/126
(83 %)
0 diff
(100 %id)
EC461391 Prostate .a 623 to 729 9 to 116       108/118
(91 %)
4 diff
(96.7 %id)
AF243424   .a 698 to 2944 1 to 2247   tiling clone,   2247/2247
(100 %)
1 diff
(100.0 %id)
EC455371 Prostate .a 731 to 838 1 to 108       108/108
(100 %)
0 diff
(100 %id)
BE167392 head_neck .a 887 to 1123 243 to 6     Submitted on the opposite strand 238/250
(95 %)
2 diff
(99.2 %id)
TI_1752770596   .a 1204 to 2664 1197 to 7   tiling clone,   1164/1315
(88 %)
18 diff
(98.7 %id)
BG481996 choriocarcinoma, placenta .a 1229 to 1980 1 to 745       704/746
(94 %)
22 diff
(97.1 %id)
BE732887 choriocarcinoma, placenta .a 1249 to 1986 1 to 735       735/756
(97 %)
9 diff
(98.9 %id)
BM453981 melanotic melanoma, skin .a 1485 to 2337 1 to 855       855/858
(99 %)
5 diff
(99.5 %id)
TI_1752771858   .a 1608 to 2736 1 to 1132       1132/1133
(99 %)
25 diff
(97.8 %id)
TI_1520877059   .a 1609 to 2792 1 to 1181       1181/1205
(98 %)
30 diff
(97.6 %id)
BQ360168 ovary .a 1629 to 2175 1 to 547       547/547
(100 %)
3 diff
(99.5 %id)
BF367259 placenta_normal .a 1637 to 1767 1 to 132       132/132
(100 %)
7 diff
(94.7 %id)
BQ360172 ovary .a 1654 to 2178 1 to 525       525/525
(100 %)
2 diff
(99.7 %id)
TI_1752771728   .a 1717 to 2802 1150 to 70       1081/1262
(85 %)
14 diff
(98.9 %id)
TI_2194629190   .a 1721 to 2802 1141 to 70       1072/1288
(83 %)
13 diff
(99.0 %id)
DA888740   .a 1903 to 2475 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
BE082928 breast .a 1930 to 2419 493 to 2     Submitted on the opposite strand 492/493
(99 %)
2 diff
(99.6 %id)
BE080590 breast .a 1932 to 2373 453 to 11     Submitted on the opposite strand 443/453
(97 %)
1 diff
(99.8 %id)
BX394218 Neuroblastoma Cot 25-normalized .a 1941 to 2879 1 to 936       936/1044
(89 %)
11 diff
(99.0 %id)
BX391174 Neuroblastoma Cot 25-normalized .a 1943 to 2828 1 to 886       886/886
(100 %)
29 diff
(96.8 %id)
TI_2194631059   .a 1980 to 2802 890 to 73       818/1093
(74 %)
5 diff
(99.6 %id)
BQ637249 eye, retina .a 1985 to 2550 1 to 566       566/566
(100 %)
0 diff
(100 %id)
AW503404 lymph .a 2022 to 2489 1 to 468       468/471
(99 %)
10 diff
(97.9 %id)
TI_154159266   .a 2028 to 2512 92 to 576       485/486
(99 %)
2 diff
(99.6 %id)
BF240497 bone marrow, from acute myelogenous leukemia .a 2041 to 2683 1 to 644       644/824
(78 %)
19 diff
(97.7 %id)
TI_2194632619   .a 2102 to 2802 54 to 754       701/1096
(63 %)
7 diff
(99.4 %id)
FN078181 breast carcinoma .a 2143 to 2230 1 to 89       89/103
(86 %)
1 diff
(99.1 %id)
BG619755 placenta .a 2152 to 2711 1 to 562       562/562
(100 %)
3 diff
(99.5 %id)
DA145570 amygdala .a 2155 to 2731 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
CB215669 normal endometrium, late proliferativephase, cycle day 13, uterus .a 2228 to 2861 1 to 635       635/635
(100 %)
1 diff
(99.9 %id)
TI_1752768510   .a 2258 to 2802 685 to 141       545/685
(79 %)
0 diff
(100 %id)
BX496906 Liver .a 2310 to 2917 1 to 608       608/608
(100 %)
1 diff
(99.9 %id)
FN094801 breast carcinoma .a 2341 to 2437 97 to 1     Submitted on the opposite strand 97/97
(100 %)
0 diff
(100 %id)
BG572065 placenta .a 2371 to 3034 1 to 670       670/891
(75 %)
11 diff
(98.8 %id)
AW859520 colon .a 2412 to 2955 546 to 2       545/546
(99 %)
10 diff
(98.2 %id)
AI800786 pooled .a 2486 to 2795 356 to 47   AAA   310/342
(90 %)
0 diff
(100 %id)
BX369751 Neuroblastoma Cot 25-normalized .a 2618 to 3478 1 to 859       859/932
(92 %)
21 diff
(97.8 %id)
BX368152 Neuroblastoma Cot 25-normalized .a 2621 to 3375 1 to 758       758/842
(90 %)
44 diff
(94.8 %id)
BX367743 Neuroblastoma Cot 25-normalized .a 2628 to 3513 1 to 886   tiling clone,   886/890
(99 %)
17 diff
(98.1 %id)
BE770189 prostate_tumor .a 2674 to 3036 13 to 376       364/376
(96 %)
6 diff
(98.5 %id)
BE770192 prostate_tumor .a 2675 to 3053 7 to 385       379/385
(98 %)
0 diff
(100 %id)
BE709130 head_neck .a 2692 to 2935 21 to 263       243/273
(89 %)
3 diff
(99.0 %id)
BF694510 muscle (skeletal) .a 2783 to 3086 1 to 303       303/943
(32 %)
3 diff
(99.7 %id)
CX788402 human embryonic stem cells .a 3062 to 3800 1 to 738   tiling clone,   738/738
(100 %)
7 diff
(99.1 %id)
CB142595 Liver .a 3074 to 3451 19 to 395       377/395
(95 %)
6 diff
(98.5 %id)
BX110552 whole brain .a 3080 to 3403 1 to 323       323/323
(100 %)
1 diff
(99.7 %id)
BP430128   .a 3108 to 3471 1 to 365       365/365
(100 %)
1 diff
(99.8 %id)
AA308075 colon .a 3133 to 3611 1 to 477       477/477
(100 %)
2 diff
(99.6 %id)
AW960386   .a 3134 to 3715 1 to 578       578/579
(99 %)
14 diff
(97.6 %id)
CB986898 Pooled-Glandular .a 3140 to 3833 1 to 702       702/708
(99 %)
14 diff
(98.1 %id)
CB159719 Liver .a 3164 to 3706 17 to 560       544/560
(97 %)
6 diff
(99.0 %id)
BG112343 Bone, osteosarcoma, cell line .a 3192 to 3821 1 to 630       630/636
(99 %)
23 diff
(96.4 %id)
BG547171 lung .a 3199 to 3874 1 to 688       688/689
(99 %)
47 diff
(93.2 %id)
BG030926 breast, mammary adenocarcinoma, cell line .a 3319 to 4045 1 to 711       711/740
(96 %)
29 diff
(96.1 %id)
BG429846 Kidney .a 3367 to 4073 1 to 705       705/846
(83 %)
9 diff
(99.0 %id)
BG542233 lung .a 3373 to 4158 1 to 791   tiling clone,   791/791
(100 %)
75 diff
(90.6 %id)
TI_149282584   .a 3401 to 4097 776 to 80   AAA   697/697
(100 %)
1 diff
(99.9 %id)
BQ776020 Bone, Human Chondrosarcoma Cell Line .a 3401 to 4097 715 to 19   tiling clone, AAA   697/697
(100 %)
0 diff
(100 %id)
FN165492 breast carcinoma .a 3405 to 3507 1 to 106       106/108
(98 %)
4 diff
(96.3 %id)
BM983887 lung, Primary Lung Epithelial Cells .a 3422 to 4097 694 to 19   AAA   676/676
(100 %)
1 diff
(99.9 %id)
CA429409 Cell Line, Chondrosarcoma .a 3464 to 4091 646 to 19   AAA   628/628
(100 %)
1 diff
(99.9 %id)
AA287463 germinal center B cell .a 3503 to 3942 1 to 440       440/440
(100 %)
0 diff
(100 %id)
BF001858 colon, colon tumor, RER+ .a 3519 to 4092 573 to 1       573/573
(100 %)
1 diff
(99.9 %id)
BF126666 Liver .a 3578 to 4150 1 to 555   tiling clone,   555/763
(72 %)
19 diff
(97.6 %id)
BU507995 leiomyosarcoma, uterus .a 3590 to 4097 1 to 508   AAA   508/508
(100 %)
0 diff
(100 %id)
CN309053 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3610 to 3963 1 to 354       354/354
(100 %)
1 diff
(99.8 %id)
FN177361 breast carcinoma .a 3616 to 3685 1 to 70       70/70
(100 %)
2 diff
(97.2 %id)
BQ773930 Bone, Human Chondrosarcoma Cell Line .a 3697 to 4091 413 to 19   AAA   395/395
(100 %)
8 diff
(98.0 %id)
AI015766   .a 3717 to 4092 380 to 5       376/380
(98 %)
0 diff
(100 %id)
AI081274 pooled germ cell tumors .a 3721 to 4099 393 to 15   AAA   379/379
(100 %)
2 diff
(99.5 %id)
BI963242 Islets of Langerhans, Pancreas .a 3742 to 4102 363 to 3       361/363
(99 %)
0 diff
(100 %id)
EC497456 Prostate .a 3865 to 3984 1 to 125       125/129
(96 %)
8 diff
(93.8 %id)
EC554126 Prostate .a 3865 to 3987 1 to 123       123/123
(100 %)
0 diff
(100 %id)
AV707699 adrenal gland .a 4122 to 4209 689 to 774   tiling clone, Suspected internal deletion 734/776
(94 %)
21 diff
(97.3 %id)
NM_014574.3   .b 1 to 3970 1 to 3970 exact RefSeq, AAA   3970/3970
(100 %)
0 diff
(100 %id)
U17989 Liver .b 13 to 3886 1 to 3875 Y63N N387S tiling clone,   3875/3875
(100 %)
11 diff
(99.8 %id)
AK290229 thalamus .b 23 to 2567 1 to 2545 N387S     2545/2545
(100 %)
1 diff
(100.0 %id)
AK314041 trachea .b 35 to 2358 1 to 2324 exact     2324/2324
(100 %)
1 diff
(100.0 %id)
BC126221 Brain, cerebellum, PCR rescued clones .b 83 to 2424 1 to 2342 N387S     2342/2342
(100 %)
1 diff
(100.0 %id)
BC132673 Brain, cerebellum, PCR rescued clones .b 83 to 2424 1 to 2342 exact tiling clone,   2342/2342
(100 %)
0 diff
(100 %id)
TI_1752771860   .b 473 to 1562 5 to 1088       1084/1160
(93 %)
15 diff
(98.8 %id)
TI_1520877063   .b 483 to 1527 13 to 1053       1041/1268
(82 %)
19 diff
(98.6 %id)
TI_1752768514   .b 680 to 1467 792 to 2       791/806
(98 %)
11 diff
(98.7 %id)
TI_1520871663   .b 714 to 1468 759 to 3       757/762
(99 %)
14 diff
(98.2 %id)
BP220665 colon .b 838 to 1395 1 to 558       558/558
(100 %)
1 diff
(99.9 %id)
BE006441 breast_normal .b 906 to 1269 361 to 1     Submitted on the opposite strand 361/361
(100 %)
5 diff
(98.7 %id)
TI_1520871669   .b 1018 to 1805 802 to 14       789/806
(97 %)
5 diff
(99.4 %id)
BM801266 leiomyosarcoma, uterus .b 1037 to 1750 1 to 716       716/949
(75 %)
15 diff
(98.5 %id)
BX501053 Liver .b 1081 to 1600 1 to 520       520/520
(100 %)
1 diff
(99.9 %id)
BC143933 Brain, cerebellum, PCR rescued clones .c 1 to 2208 1 to 2208 N30S tiling clone,   2208/2208
(100 %)
1 diff
(100.0 %id)
TI_2194632614   .c 391 to 1464 5 to 1075       1071/1309
(81 %)
20 diff
(98.5 %id)
TI_2194632606   .c 784 to 1889 1 to 1111       1111/1266
(87 %)
20 diff
(98.5 %id)
AA069680   .c 2092 to 2481 1 to 390   tiling clone,   390/392
(99 %)
1 diff
(99.8 %id)
TI_159723022   .c 2702 to 3669 1029 to 85   tiling clone, AAA   945/996
(94 %)
19 diff
(98.1 %id)
BX391173 Neuroblastoma Cot 25-normalized .c 2760 to 3702 943 to 1   tiling clone,   943/943
(100 %)
33 diff
(96.6 %id)
BM703040 eye, human retina .c 2865 to 3362 1 to 498   tiling clone,   498/498
(100 %)
0 diff
(100 %id)
BM129111 Islets of Langerhans, Pancreas .c 2886 to 3350 1 to 465   fully sequenced,   465/465
(100 %)
0 diff
(100 %id)
CB177336 Pancreas, Purified pancreatic islet .c 2908 to 3327 16 to 435       420/435
(96 %)
6 diff
(98.7 %id)
CA774504 Pancreas, Purified pancreatic islet .c 2959 to 3664 709 to 4       706/709
(99 %)
0 diff
(100 %id)
CA944831 Human Lung Epithelial cells, lung .c 2965 to 3669 722 to 19   AAA   704/704
(100 %)
2 diff
(99.8 %id)
BG533389 Liver .c 2971 to 3644 1 to 671       671/861
(77 %)
21 diff
(97.6 %id)
BU533700 mixed (pool of 40 RNAs) .c 3078 to 3670 1 to 593       593/600
(98 %)
2 diff
(99.7 %id)
AA069721   .c 3100 to 3675 580 to 4       577/599
(96 %)
0 diff
(100 %id)
BU607933 Human Lung Epithelial cells, lung .c 3111 to 3674 582 to 19   AAA   564/564
(100 %)
1 diff
(99.9 %id)
AI685493 Prostate .c 3180 to 3670 493 to 3       491/493
(99 %)
0 diff
(100 %id)
BG425713 Kidney .c 3193 to 3884 1 to 693   tiling clone,   693/823
(84 %)
17 diff
(98.0 %id)
CB241228 Human Lung Epithelial cells, lung .c 3197 to 3659 482 to 21       462/482
(95 %)
0 diff
(100 %id)
AW243088 Kidney .c 3202 to 3669 468 to 1       468/468
(100 %)
3 diff
(99.4 %id)
AW104574 pooled .c 3211 to 3670 462 to 3       460/462
(99 %)
0 diff
(100 %id)
CB113023 Liver .c 3228 to 3669 1 to 442   AAA   442/442
(100 %)
0 diff
(100 %id)
AW070834 breast, four pooled high-grade tumors, including twoprimary tumors and two metastatic to ovary .c 3239 to 3749 513 to 3   tiling clone,   511/513
(99 %)
0 diff
(100 %id)
BF055093 pooled .c 3256 to 3737 484 to 3       482/484
(99 %)
0 diff
(100 %id)
AA358215 lung .c 3307 to 3669 363 to 1       363/363
(100 %)
1 diff
(99.8 %id)
AV749754 Pituitary .c 3307 to 3865 1 to 547   tiling clone,   547/547
(100 %)
23 diff
(95.8 %id)
BM128854 Islets of Langerhans, Pancreas .c 3320 to 3668 371 to 23   fully sequenced, AAA   349/349
(100 %)
5 diff
(98.6 %id)
CB068429 Pancreas, Purified pancreatic islet .c 3333 to 3670 338 to 1       338/338
(100 %)
7 diff
(98.0 %id)
BP197342 adrenal gland .c 3361 to 3669 1 to 309   AAA   309/309
(100 %)
0 diff
(100 %id)
BU729261 eye, human retina .c 3401 to 3730 348 to 19   AAA   330/335
(98 %)
5 diff
(98.6 %id)
AI696581 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 3420 to 3669 269 to 19   AAA   251/251
(100 %)
2 diff
(99.3 %id)
AU117916 whole embryo, mainly head .d 1 to 809 2 to 812   tiling clone, capped   811/818
(99 %)
6 diff
(99.3 %id)
DB355897 whole embryo, mainly head .d 1278 to 1651 372 to 1   tiling clone,   372/376
(98 %)
18 diff
(95.3 %id)
CB147688 Liver .e 1 to 480 1 to 479 Q34H P35Q A36R R37G G38A ... tiling clone,   479/479
(100 %)
2 diff
(99.6 %id)
DB278189 uterus .f 1 to 544 2 to 546 exact tiling clone, capped   545/545
(100 %)
3 diff
(99.5 %id)
DB034558 testis .g 1 to 566 2 to 567 E102G tiling clone, capped   566/566
(100 %)
2 diff
(99.7 %id)
DA172872 amygdala .h 1 to 574 2 to 577 L2V P3T R4Q L5A E6W ... tiling clone, capped   576/576
(100 %)
3 diff
(99.5 %id)
BF856207 prostate_normal .i 1 to 329 361 to 34   tiling clone, Submitted on the opposite strand 328/387
(84 %)
1 diff
(99.8 %id)
BF856013 prostate_normal .i 3 to 343 31 to 367 exact tiling clone,   337/371
(90 %)
7 diff
(98.2 %id)
BF856206 prostate_normal .i 3 to 343 30 to 369 exact     340/381
(89 %)
7 diff
(98.2 %id)
AA769156 germinal center B cell .j-u 1 to 404 415 to -4 exact tiling clone,   412/415
(99 %)
0 diff
(100 %id)
BQ348162 head_neck .k-u 1 to 391 8 to 398 F17L F18S S20P M23I tiling clone,   398/398
(100 %)
6 diff
(98.5 %id)
BE841625 stomach_normal .l 1 to 379 384 to 5 L31N A32C Y33K S34* tiling clone,   380/384
(98 %)
13 diff
(96.7 %id)
BQ429391 testis Gene STRN3, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k-u, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI