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Gene PLXNB3andSRPK3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
199 supporting clones for gene PLXNB3andSRPK3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001163257.1   .a 1 to 6376 2 to 6377 exact RefSeq,   6377/6377
(100 %)
0 diff
(100 %id)
AK307894 hippocampus .a 23 to 5558 1 to 5535   tiling clone,   5535/5535
(100 %)
8 diff
(99.9 %id)
DA335177 hippocampus .a 24 to 612 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA192765 amygdala .a 80 to 655 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
AK295762 hippocampus .a 146 to 6376 1 to 6231 A172V L323P V621I E1179D M1558T tiling clone,   6231/6231
(100 %)
6 diff
(100.0 %id)
DA328489 hippocampus .a 147 to 699 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA316943 hippocampus .a 1916 to 2464 2 to 550   tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
DA234515 brain .a 1962 to 2539 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA092125 cerebellum .a 2136 to 2715 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
CA397317 eye, RPE/choroid .a 2137 to 2731 1 to 595       595/595
(100 %)
0 diff
(100 %id)
DA238964 brain .a 2192 to 2779 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA235111 brain .a 2193 to 2776 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DB063678 testis .a 2387 to 2929 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA235024 brain .a 2471 to 2986 2 to 517   capped   516/516
(100 %)
0 diff
(100 %id)
DA336869 hippocampus .a 2684 to 3260 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA331741 hippocampus .a 2744 to 3332 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA318179 hippocampus .a 2803 to 3303 2 to 502   capped   501/501
(100 %)
0 diff
(100 %id)
DA326461 hippocampus .a 2849 to 3406 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB236257 trachea .a 2881 to 3443 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DA402753 thalamus .a 3098 to 3650 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
CA454294   .a 3505 to 4226 1 to 727       727/878
(82 %)
15 diff
(98.3 %id)
DA354243 substantia nigra .a 3708 to 4295 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
BF347458 anaplastic oligodendroglioma with 1p/19qloss, brain .a 3869 to 4494 1 to 629       626/635
(98 %)
31 diff
(95.2 %id)
BG469546 adenocarcinoma cell line, colon .a 3884 to 4673 1 to 798       798/798
(100 %)
31 diff
(96.2 %id)
BC009345 Brain, neuroblastoma .a 4235 to 6364 2139 to 10   tiling clone, Submitted on the opposite strand 2130/2824
(75 %)
0 diff
(100 %id)
DA271704 caudate nucleus .a 4301 to 4875 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BQ722416 sympathetic trunk .a 4314 to 5179 1 to 875       875/966
(90 %)
18 diff
(98.2 %id)
BG913187 anaplastic oligodendroglioma with 1p/19qloss, brain .a 4325 to 5062 1 to 740       740/742
(99 %)
12 diff
(98.4 %id)
BP219309 caudate nucleus .a 4411 to 4999 1 to 589       589/589
(100 %)
3 diff
(99.5 %id)
BE700968 nervous_normal .a 4474 to 4765 292 to 1       292/296
(98 %)
12 diff
(96.0 %id)
BG912909 anaplastic oligodendroglioma with 1p/19qloss, brain .a 4494 to 5236 23 to 768       746/768
(97 %)
18 diff
(97.7 %id)
BF345214 anaplastic oligodendroglioma with 1p/19qloss, brain .a 4615 to 5245 1 to 637       637/963
(66 %)
32 diff
(96.7 %id)
Z44851 brain, total brain .a 4651 to 4952 1 to 301       301/301
(100 %)
5 diff
(98.4 %id)
BF934444 nervous_tumor .a 4660 to 5115 1 to 456       456/456
(100 %)
2 diff
(99.6 %id)
R15016 whole brain .a 4674 to 5033 1 to 364       364/365
(99 %)
17 diff
(95.4 %id)
R25301 whole brain .a 4674 to 5066 1 to 401       401/453
(88 %)
17 diff
(96.3 %id)
CN431799 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 4767 to 5528 1 to 766       766/766
(100 %)
6 diff
(99.3 %id)
BE890324 melanotic melanoma, skin .a 4770 to 5447 1 to 679       679/873
(77 %)
20 diff
(97.8 %id)
AI884619 anaplastic oligodendroglioma, brain .a 5069 to 5585 645 to 129   AAA   517/643
(80 %)
13 diff
(98.0 %id)
BG912057 anaplastic oligodendroglioma with 1p/19qloss, brain .a 5312 to 6049 1 to 738       738/740
(99 %)
9 diff
(98.8 %id)
BG820601 anaplastic oligodendroglioma with 1p/19qloss, brain .a 5313 to 6126 1 to 811       811/812
(99 %)
12 diff
(98.6 %id)
AA319852 adrenal gland .a 5626 to 5944 1 to 324       324/324
(100 %)
5 diff
(98.5 %id)
CA313922 Human Lung Epithelial cells, lung .a 5632 to 6370 758 to 19   AAA   740/740
(100 %)
1 diff
(99.9 %id)
DB292008 uterus .a 5667 to 6264 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
BM688626 eye, optic nerve .a 5686 to 6146 9 to 469       461/469
(98 %)
1 diff
(99.8 %id)
BM689380 eye, optic nerve .a 5752 to 6223 1 to 472   fully sequenced,   472/472
(100 %)
4 diff
(99.2 %id)
AI480279 pooled .a 5754 to 6371 621 to 7       615/621
(99 %)
7 diff
(98.9 %id)
CA425482 Bone, Subchondral Bone .a 5783 to 6370 608 to 19   AAA   590/590
(100 %)
2 diff
(99.7 %id)
N49853 multiple sclerosis lesions .a 5785 to 6365 593 to 1       593/603
(98 %)
19 diff
(96.9 %id)
AI609808 brain, glioblastoma (pooled) .a 5821 to 6370 549 to 1       549/549
(100 %)
5 diff
(99.1 %id)
BF438477 brain, glioblastoma (pooled) .a 5885 to 6366 486 to 1       486/524
(92 %)
17 diff
(96.8 %id)
DB309503 hippocampus .a 5893 to 6376 484 to 1       484/484
(100 %)
0 diff
(100 %id)
BI196521 brain, neuroblastoma .a 5902 to 6364 464 to 2     Submitted on the opposite strand 463/819
(56 %)
7 diff
(99.2 %id)
R41456 whole brain .a 6021 to 6370 369 to 12   AAA   358/366
(97 %)
7 diff
(98.1 %id)
Z40628 brain, total brain .a 6098 to 6370 273 to 1       273/273
(100 %)
0 diff
(100 %id)
R46653 whole brain .a 6108 to 6370 274 to 12   AAA   263/263
(100 %)
0 diff
(100 %id)
BM673037 eye, optic nerve .a 6193 to 6370 196 to 19   fully sequenced, AAA   178/178
(100 %)
6 diff
(96.7 %id)
AK292535 testis .b 1 to 6204 2 to 6205 E321G V598I P678L E1156D M1535T tiling clone,   6205/6205
(100 %)
7 diff
(99.9 %id)
NM_005393.2   .b 1 to 6210 2 to 6211 exact RefSeq,   6211/6211
(100 %)
0 diff
(100 %id)
DB084000 testis .b 1 to 571 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA314479 hippocampus .b 18 to 576 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA227114 brain .b 20 to 583 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA338922 hippocampus .b 21 to 579 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BP348957 brain .b 22 to 602 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA324591 hippocampus .b 24 to 579 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AB033032 brain .b 60 to 6204 1 to 6145 exact tiling clone, available from KIAA,   6145/6145
(100 %)
0 diff
(100 %id)
AF149019 brain .b 60 to 6204 1 to 6145 exact     6145/6145
(100 %)
0 diff
(100 %id)
BP234515 coronary artery .b 75 to 661 1 to 587       587/587
(100 %)
0 diff
(100 %id)
DB289725 uterus .b 135 to 717 2 to 584   capped   583/586
(99 %)
2 diff
(99.7 %id)
DA314137 hippocampus .b 141 to 701 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA316768 hippocampus .b 147 to 689 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
BP348513 brain .b 159 to 740 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
DA324083 hippocampus .b 166 to 712 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA210534 brain .b 169 to 730 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DC318498 amygdala .c 1 to 551 1 to 551   tiling clone,   551/551
(100 %)
0 diff
(100 %id)
DB480120 hippocampus .c 1 to 721 1 to 721       721/723
(99 %)
5 diff
(99.4 %id)
DC332416 hippocampus .c 3 to 540 1 to 538       538/538
(100 %)
1 diff
(99.9 %id)
AK295894 hippocampus .c 53 to 5141 1 to 5089 exact tiling clone,   5089/5089
(100 %)
2 diff
(100.0 %id)
DC333440 hippocampus .c 53 to 629 1 to 577       577/577
(100 %)
0 diff
(100 %id)
DC336181 hippocampus .c 53 to 646 1 to 594       594/594
(100 %)
0 diff
(100 %id)
DC336264 hippocampus .c 53 to 633 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DC332821 hippocampus .c 57 to 585 1 to 530       530/530
(100 %)
1 diff
(99.9 %id)
DC332935 hippocampus .c 57 to 593 1 to 539       539/539
(100 %)
2 diff
(99.7 %id)
DC322299 brain .c 118 to 652 1 to 535       535/535
(100 %)
0 diff
(100 %id)
AK295849 hippocampus .d 1 to 3106 1 to 3106 V208I E766D K917N tiling clone,   3106/3106
(100 %)
3 diff
(100.0 %id)
DC335663 hippocampus .d 1 to 578 1 to 578       578/578
(100 %)
0 diff
(100 %id)
BF345653 anaplastic oligodendroglioma with 1p/19qloss, brain .e 1 to 792 1 to 794   tiling clone,   794/808
(98 %)
20 diff
(97.6 %id)
AB209155 brain .e 657 to 5135 1 to 4479 P403S tiling clone,   4479/4479
(100 %)
3 diff
(100.0 %id)
BQ346277 nervous_tumor .e 961 to 1486 1 to 526       526/526
(100 %)
26 diff
(95.1 %id)
AI918801 pooled germ cell tumors .e 1673 to 2138 481 to 15   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 446/482
(92 %)
7 diff
(98.6 %id)
BE504770 pooled germ cell tumors .e 1751 to 2120 370 to 1       370/372
(99 %)
17 diff
(95.5 %id)
BX091694 whole brain .e 1755 to 2138 397 to 14   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 384/397
(96 %)
0 diff
(100 %id)
TI_149279494   .e 1840 to 2144 389 to 85   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 305/771
(39 %)
0 diff
(100 %id)
BM969558 lung, Primary Lung Epithelial Cells .e 1840 to 2144 322 to 18   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 305/330
(92 %)
0 diff
(100 %id)
AA770168   .e 1865 to 2138 277 to 4       274/277
(98 %)
0 diff
(100 %id)
AI702798 carcinoid, lung .e 2026 to 2138 115 to 3       113/115
(98 %)
0 diff
(100 %id)
BG056515 brain, glioblastoma with probably TP53 mutation andwithout EGFR amplification .e 2044 to 2138 99 to 5       95/99
(95 %)
0 diff
(100 %id)
BG055678 brain, glioblastoma with probably TP53 mutation andwithout EGFR amplification .e 2046 to 2138 104 to 12   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 93/104
(89 %)
0 diff
(100 %id)
C01946   .e 2047 to 2131 1 to 85       85/91
(93 %)
1 diff
(99.0 %id)
DA098743 cerebellum .e 2442 to 2845 140 to 544   capped   405/543
(74 %)
6 diff
(98.9 %id)
CF131781 Chondrosarcoma Lung Metastasis cell lines, lung .e 3384 to 3904 1 to 521       521/521
(100 %)
0 diff
(100 %id)
AA514687 colon .e 3440 to 3977 572 to 40       533/572
(93 %)
10 diff
(98.3 %id)
BE836207 prostate_normal .e 3526 to 3697 1 to 175       175/198
(88 %)
13 diff
(93.5 %id)
DB057391 testis .e 3528 to 4056 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
TI_1320130258   .e 4004 to 4303 907 to 1209       303/365
(83 %)
24 diff
(93.5 %id)
TI_1320130527   .e 4075 to 5021 1 to 947       947/1255
(75 %)
9 diff
(99.3 %id)
AA427795   .e 4081 to 4495 1 to 411       411/414
(99 %)
8 diff
(98.1 %id)
BX282601   .e 4082 to 4579 1 to 498   tiling clone,   498/498
(100 %)
1 diff
(99.8 %id)
AA331163   .e 4091 to 4443 1 to 352       352/353
(99 %)
10 diff
(97.2 %id)
TI_151729149   .e 4209 to 5135 987 to 71   AAA   917/921
(99 %)
28 diff
(97.0 %id)
AA425725   .e 4568 to 5135 597 to 29   AAA   569/569
(100 %)
4 diff
(99.3 %id)
AJ574503 pectoral muscle (after mastectomy) .e 4763 to 5126 13 to 377       365/377
(96 %)
17 diff
(95.5 %id)
F35586 pectoral muscle (after mastectomy) .e 4786 to 5044 7 to 265       259/265
(97 %)
0 diff
(100 %id)
F26902 pectoral muscle (after mastectomy) .e 4798 to 5072 1 to 275       275/275
(100 %)
4 diff
(98.6 %id)
BG258751 embryonal carcinoma, cell line, testis .e 4799 to 5135 1 to 337   AAA   337/337
(100 %)
0 diff
(100 %id)
AJ572978 pectoral muscle (after mastectomy) .e 4810 to 5165 13 to 373       361/373
(96 %)
6 diff
(98.4 %id)
AJ573407 pectoral muscle (after mastectomy) .e 4844 to 5138 1 to 295   AAA   295/295
(100 %)
2 diff
(99.4 %id)
F35995 pectoral muscle (after mastectomy) .e 4846 to 5171 1 to 326   tiling clone, AAA   326/326
(100 %)
2 diff
(99.4 %id)
AI381788 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 4930 to 5137 210 to 2       209/211
(99 %)
0 diff
(100 %id)
AK304705 uterus .f 1 to 2257 1 to 2257 V280I tiling clone,   2257/2257
(100 %)
1 diff
(100.0 %id)
DC422383 uterus .f 1 to 513 1 to 514       514/514
(100 %)
1 diff
(99.9 %id)
DC313629 amygdala .f 62 to 521 1 to 460       460/460
(100 %)
0 diff
(100 %id)
NM_014370.3   .g 1 to 2001 1 to 2001 exact RefSeq, AAA   2001/2001
(100 %)
0 diff
(100 %id)
AK301749 testis .g 41 to 1998 1 to 1958 exact tiling clone,   1958/1958
(100 %)
1 diff
(100.0 %id)
AK314828 skeletal muscle .g 41 to 1790 1 to 1750 P381T     1750/1750
(100 %)
3 diff
(99.9 %id)
BC092416 Muscle pool- 2 tissues- cardiac and skeletalmuscle. .g 55 to 2001 1 to 1947 exact tiling clone, AAA   1947/1947
(100 %)
1 diff
(100.0 %id)
NM_001170760.1   .h 1 to 1999 1 to 1999 exact RefSeq,   1999/1999
(100 %)
0 diff
(100 %id)
BC117124 Brain, cerebral cortex, PCR rescued clones .h 7 to 1881 1 to 1875 exact tiling clone,   1875/1875
(100 %)
2 diff
(99.9 %id)
DQ099381   .h 87 to 1787 1 to 1701 exact tiling clone,   1701/1701
(100 %)
2 diff
(99.9 %id)
TI_1320131819   .h 780 to 1640 873 to 13       861/915
(94 %)
10 diff
(99.0 %id)
BG391739 embryonal carcinoma, cell line, testis .h 827 to 1098 1 to 277       277/277
(100 %)
6 diff
(97.9 %id)
BC131771 PCR rescued clones .i 1 to 2330 2341 to 12 V253I tiling clone, Submitted on the opposite strand 2330/2361
(98 %)
2 diff
(100.0 %id)
DA126148 cerebellum .i 1150 to 1670 2 to 521   capped   520/524
(99 %)
3 diff
(99.5 %id)
DA316419 hippocampus .i 1313 to 1785 2 to 475   capped   474/474
(100 %)
2 diff
(99.6 %id)
DA333404 hippocampus .i 1577 to 2148 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
CN431798 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i 1739 to 2184 1 to 446       446/446
(100 %)
1 diff
(99.8 %id)
DC315520 amygdala .j 1 to 570 1 to 572   tiling clone,   572/572
(100 %)
4 diff
(99.4 %id)
NM_001170761.1   .j 3 to 1902 1 to 1900 exact RefSeq,   1900/1900
(100 %)
0 diff
(100 %id)
CB156737 brain .j 41 to 666 1 to 628       628/628
(100 %)
2 diff
(99.7 %id)
DC330921 hippocampus .j 43 to 612 1 to 570       570/570
(100 %)
0 diff
(100 %id)
DC385507 skeletal muscle .j 43 to 547 1 to 506       506/506
(100 %)
3 diff
(99.5 %id)
DC385639 skeletal muscle .j 43 to 582 1 to 540       540/540
(100 %)
0 diff
(100 %id)
DC385705 skeletal muscle .j 43 to 612 1 to 570       570/570
(100 %)
0 diff
(100 %id)
DC385785 skeletal muscle .j 43 to 618 1 to 574       574/574
(100 %)
1 diff
(99.9 %id)
DC385843 skeletal muscle .j 43 to 597 1 to 556       556/556
(100 %)
1 diff
(99.9 %id)
DC395021 testis .j 43 to 582 1 to 540       540/540
(100 %)
0 diff
(100 %id)
BP372246 umbilical cord .j 43 to 621 1 to 579       579/579
(100 %)
8 diff
(98.7 %id)
DR007202 Spleen .j 50 to 355 30 to 335       306/335
(91 %)
10 diff
(97.1 %id)
CF552053 Pooled muscle (cardiac and skeletal) .j 57 to 577 28 to 548       521/551
(94 %)
1 diff
(99.9 %id)
AF027406   .j 65 to 1899 1 to 1835 exact tiling clone,   1835/1835
(100 %)
0 diff
(100 %id)
U82808 skeletal muscle .k 1 to 1715 1 to 1715 exact tiling clone,   1715/1715
(100 %)
0 diff
(100 %id)
BM721178 eye, fetal eye .l 1 to 442 1 to 441   tiling clone,   441/441
(100 %)
2 diff
(99.6 %id)
H51489 brain .l 138 to 471 1 to 330   tiling clone,   330/363
(90 %)
8 diff
(97.8 %id)
BF528615 anaplastic oligodendroglioma with 1p/19qloss, brain .l 461 to 1233 1 to 771   tiling clone,   771/1058
(72 %)
9 diff
(99.2 %id)
BM679599 eye, fetal eye .l 1085 to 1789 723 to 19   tiling clone, AAA   705/705
(100 %)
2 diff
(99.8 %id)
H51490 brain .l 1385 to 1757 374 to 1   tiling clone,   374/376
(99 %)
3 diff
(99.3 %id)
CV346513 testis_normal .m-u 1 to 342 1 to 342   tiling clone,   342/342
(100 %)
0 diff
(100 %id)
BP201089 amygdala .m-u 36 to 617 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA312130 hippocampus .m-u 232 to 770 2 to 540   tiling clone, capped   539/539
(100 %)
0 diff
(100 %id)
TI_159677555   .n 1 to 726 56 to 776 V2F T4A E6* tiling clone,   721/1033
(69 %)
17 diff
(98.4 %id)
BP250742 hippocampus .o 1 to 583 1 to 583   tiling clone,   583/583
(100 %)
0 diff
(100 %id)
BF337187 brain, glioblastoma with EGFR amplification .o 130 to 801 1 to 666       666/1007
(66 %)
20 diff
(98.1 %id)
AL039913.
matches multiple genes
testis .o 563 to 1051 1 to 491   tiling clone, also hits gene KDM3A 491/491
(100 %)
4 diff
(99.2 %id)
AA337930 endometrium .p 1 to 302 1 to 302   tiling clone,   302/302
(100 %)
3 diff
(99.1 %id)
CD106669 brain, Pituitary .p 108 to 961 1 to 861 A209P H210S I211H V212S E213G ... tiling clone,   861/894
(96 %)
15 diff
(98.4 %id)
DA326525 hippocampus .q 1 to 564 2 to 566   tiling clone, capped   565/565
(100 %)
1 diff
(99.9 %id)
DA220012 brain .q 424 to 980 2 to 558   tiling clone, capped   557/557
(100 %)
1 diff
(99.9 %id)
AK296538 thalamus .r 1 to 960 2 to 961 V148I tiling clone,   961/961
(100 %)
1 diff
(99.9 %id)
DA416309 thalamus .r 1 to 558 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
BM807691 brain, hippocampus .s 1 to 516 21 to 536 A9S K186Q L196P P197A V198P ... tiling clone,   646/1302
(49 %)
25 diff
(98.1 %id)
CD517568 White Matter .t 1 to 798 1 to 800 exact tiling clone,   800/850
(94 %)
2 diff
(99.8 %id)
CD300029 testis .t 684 to 1523 1 to 851   tiling clone,   851/873
(97 %)
22 diff
(97.5 %id)
BX474415   .t 1488 to 1968 1 to 482   tiling clone,   482/482
(100 %)
7 diff
(98.6 %id)
AI611047 pooled germ cell tumors .t 1877 to 2320 443 to 1   tiling clone,   443/445
(99 %)
3 diff
(99.4 %id)
C04409 heart .u 1 to 386 1 to 386   tiling clone,   386/386
(100 %)
0 diff
(100 %id)
C05422 heart .u 1 to 386 1 to 386       386/386
(100 %)
0 diff
(100 %id)
AW970460   .u 160 to 712 35 to 588       554/591
(93 %)
12 diff
(98.0 %id)
AA969001 pooled .u 176 to 712 540 to 4       537/540
(99 %)
4 diff
(99.3 %id)
AA968999 pooled .u 176 to 712 540 to 4       537/540
(99 %)
12 diff
(97.8 %id)
AA931861 carcinoid, lung .u 199 to 709 509 to 1       509/514
(99 %)
10 diff
(98.1 %id)
AA535801 colon .u 201 to 710 511 to 1       511/516
(99 %)
9 diff
(98.3 %id)
AA883320 pooled .u 223 to 712 492 to 6       487/524
(92 %)
7 diff
(98.7 %id)
AA969081 pooled .u 224 to 712 491 to 6       486/491
(98 %)
6 diff
(98.8 %id)
AI333973 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .u 227 to 712 487 to 4   tiling clone,   484/487
(99 %)
3 diff
(99.4 %id)
TI_1320130525   .u 229 to 596 12 to 378       367/1259
(29 %)
8 diff
(99.4 %id)
AI919248   .u 245 to 712 470 to 4       467/470
(99 %)
4 diff
(99.2 %id)
AI807119 pooled .u 249 to 709 461 to 1       461/462
(99 %)
9 diff
(98.1 %id)
AI002391 carcinoid, lung .u 262 to 431 169 to 1       169/169
(100 %)
6 diff
(96.5 %id)
AY927551   .va 1 to 674 1 to 674 exact tiling clone,   674/674
(100 %)
0 diff
(100 %id)
BQ896739 sympathetic trunk .vb 1 to 464 1 to 468 G137W H138S L139T T140* tiling clone,   468/1036
(45 %)
13 diff
(98.8 %id)
AL039923.
matches multiple genes
testis .vc 1 to 699 720 to 20 A48S E49R Q50A R51E E53G ... tiling clone, AAA also hits gene woblawbu 701/701
(100 %)
2 diff
(99.8 %id)
BM723513 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vd 1 to 647 1 to 648 R20L E21G I22D R24T Y25L ... tiling clone, fully sequenced,   648/648
(100 %)
3 diff
(99.6 %id)
BM681831 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vd 191 to 649 478 to 19   tiling clone, fully sequenced, AAA   460/460
(100 %)
5 diff
(99.0 %id)
DA456241 tongue, tumor tissue .ve-u 1 to 574 2 to 577 exact tiling clone, capped   576/576
(100 %)
2 diff
(99.7 %id)
BI554027 anaplastic oligodendroglioma with 1p/19qloss, brain .vf 1 to 492 10 to 502 exact tiling clone,   493/545
(90 %)
8 diff
(98.6 %id)
TI_44385021   .vf 1 to 492 102 to 594 exact     493/546
(90 %)
8 diff
(98.6 %id)
AA554445 breast .vf 130 to 622 505 to 13   tiling clone, AAA   493/499
(98 %)
17 diff
(96.6 %id)
AI923542 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .vg 1 to 573 572 to 1 P3H R4G V9W E10R R11G ... tiling clone,   572/574
(99 %)
20 diff
(96.6 %id)
DB281486 uterus .vh 1 to 542 2 to 543   tiling clone, capped   542/542
(100 %)
0 diff
(100 %id)
DB276766 uterus .vh 58 to 582 2 to 527 exact tiling clone, capped   526/526
(100 %)
1 diff
(99.9 %id)
AJ573084 pectoral muscle (after mastectomy) .vi-u 1 to 432 1 to 432 Q2K tiling clone,   432/433
(99 %)
2 diff
(99.6 %id)
AA640045 lung, lung tumor .vi-u 25 to 435 411 to 1   tiling clone,   411/411
(100 %)
0 diff
(100 %id)
BM146848 leukopheresis .vj-u 1 to 411 1 to 411 exact tiling clone,   411/423
(97 %)
3 diff
(99.3 %id)
DB275666 uterus .vk 1 to 364 2 to 365 exact tiling clone, capped   364/364
(100 %)
0 diff
(100 %id)
BF932430 nervous_tumor .vl-u 1 to 190 15 to 204 A56X tiling clone,   192/210
(91 %)
3 diff
(98.6 %id)
BP217766 caudate nucleus Gene PLXNB3andSRPK3, variant not shown         Suspected internal deletion, this clone was ignored    
AI915768 pooled Gene PLXNB3andSRPK3, variant not shown         Suspected internal deletion, this clone was ignored    
BG911805 anaplastic oligodendroglioma with 1p/19qloss, brain Gene PLXNB3andSRPK3, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve-u, .vf, .vg, .vh, .vi-u, .vj-u, .vk, .vl-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI