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Gene STAT4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
118 supporting clones for gene STAT4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB446070 testis .a 1 to 452 1 to 450   tiling clone,   450/450
(100 %)
2 diff
(99.6 %id)
BG718225 testis .a 6 to 722 1 to 719       719/725
(99 %)
12 diff
(98.4 %id)
DB451332 testis .a 11 to 489 1 to 480       480/480
(100 %)
1 diff
(99.8 %id)
DC397618 testis .a 13 to 581 1 to 570       570/570
(100 %)
1 diff
(99.9 %id)
BG722188 testis .a 18 to 757 1 to 743       743/743
(100 %)
7 diff
(99.1 %id)
DB443124 testis .a 20 to 354 1 to 342       340/420
(80 %)
11 diff
(97.4 %id)
BC031212 testis .a 23 to 2768 1 to 2746 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 2746/2746
(100 %)
0 diff
(100 %id)
CV024778 mixed .a 259 to 934 1 to 672       672/675
(99 %)
8 diff
(98.9 %id)
BX506073   .a 512 to 1091 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
CD359107 testis .a 534 to 1199 1 to 671       671/921
(72 %)
19 diff
(98.0 %id)
AL046004 testis .a 571 to 1242 30 to 700       671/704
(95 %)
9 diff
(98.8 %id)
BX480276   .a 1056 to 1564 1 to 509       509/509
(100 %)
6 diff
(98.9 %id)
CD106642 brain, Pituitary .a 1377 to 2213 1 to 844       844/846
(99 %)
15 diff
(98.3 %id)
H42788 breast .a 1520 to 1882 1 to 369       368/376
(97 %)
12 diff
(96.9 %id)
TI_1948142433   .a 1719 to 2504 908 to 123       786/1291
(60 %)
26 diff
(98.0 %id)
CD521538 pooled .a 1790 to 2485 1 to 700       700/783
(89 %)
18 diff
(97.8 %id)
TI_1948142434   .a 1877 to 2484 760 to 149       612/1465
(41 %)
40 diff
(97.3 %id)
BF056246 pooled germ cell tumors .a 2086 to 2765 679 to 1       679/679
(100 %)
3 diff
(99.6 %id)
AW269424 pooled .a 2137 to 2766 630 to 1       630/630
(100 %)
9 diff
(98.6 %id)
AA927807 pooled .a 2224 to 2769 543 to 1       543/543
(100 %)
8 diff
(98.6 %id)
AA905956 pooled .a 2234 to 2768 533 to 1       533/533
(100 %)
11 diff
(98.0 %id)
AI669013 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 2239 to 2767 527 to 1       527/527
(100 %)
2 diff
(99.7 %id)
DB551203 hippocampus .a 2283 to 2763 1 to 481     Submitted on the opposite strand 481/483
(99 %)
1 diff
(99.8 %id)
AI095935 uterus .a 2290 to 2500 211 to 1       211/211
(100 %)
12 diff
(94.4 %id)
BF833293 head_neck .a 2297 to 2691 1 to 401       406/411
(98 %)
12 diff
(97.1 %id)
BF833299 head_neck .a 2301 to 2684 389 to 6     Submitted on the opposite strand 384/390
(98 %)
2 diff
(99.5 %id)
BX111888 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 2316 to 2765 464 to 15   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 450/450
(100 %)
0 diff
(100 %id)
AW663965 pooled .a 2326 to 2768 454 to 12   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 443/443
(100 %)
2 diff
(99.6 %id)
DB511126 testis .a 2330 to 2765 1 to 438     Submitted on the opposite strand 438/438
(100 %)
3 diff
(99.4 %id)
DB516808 testis .a 2332 to 2768 1 to 437     Submitted on the opposite strand 437/437
(100 %)
0 diff
(100 %id)
DB515607 testis .a 2339 to 2767 1 to 428     Submitted on the opposite strand 428/432
(99 %)
4 diff
(99.1 %id)
DB533583 hippocampus .a 2345 to 2763 1 to 420     Submitted on the opposite strand 420/422
(99 %)
6 diff
(98.6 %id)
DB508044 testis .a 2350 to 2763 1 to 410     Submitted on the opposite strand 410/410
(100 %)
20 diff
(95.2 %id)
AI281403 follicular lymphoma, lymph node .a 2383 to 2765 396 to 16   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 381/383
(99 %)
2 diff
(99.5 %id)
H42789 breast .a 2488 to 2698 211 to 1       211/211
(100 %)
6 diff
(97.2 %id)
EU304789 Spleen .b 1 to 896 1 to 896   tiling clone,   896/896
(100 %)
0 diff
(100 %id)
DC306142 cerebellum .b 308 to 837 1 to 530       530/530
(100 %)
1 diff
(99.9 %id)
DC390261 Spleen .b 314 to 865 9 to 561       553/553
(100 %)
1 diff
(99.9 %id)
DC337084 substantia nigra .b 320 to 881 1 to 562       562/562
(100 %)
0 diff
(100 %id)
DC313613 amygdala .b 337 to 909 1 to 573       573/573
(100 %)
0 diff
(100 %id)
BF966132 brain, hippocampus .b 365 to 1088 1 to 734       732/788
(92 %)
27 diff
(96.6 %id)
NM_003151.2   .b 370 to 3130 1 to 2761 exact RefSeq,   2761/2761
(100 %)
0 diff
(100 %id)
AW877864 ovary .b 464 to 756 322 to 30       293/329
(89 %)
5 diff
(98.5 %id)
AW878229 ovary .b 471 to 773 30 to 332       303/348
(87 %)
8 diff
(97.8 %id)
BF360569 ovary .b 471 to 756 319 to 34       286/319
(89 %)
1 diff
(99.7 %id)
DA150549 amygdala .b 498 to 1060 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA395497 thalamus .b 508 to 1068 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA937196 Spleen .b 509 to 1079 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB168944 kidney, tumor tissue .b 509 to 1104 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DB162497 thymus .b 510 to 1087 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA814657   .b 511 to 1071 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA930343 small intestine .b 515 to 1099 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA940060 Spleen .b 515 to 996 2 to 489   capped   488/499
(97 %)
7 diff
(98.6 %id)
DA089363 cerebellum .b 528 to 1091 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA147806 amygdala .b 528 to 1088 2 to 561   capped   560/565
(99 %)
2 diff
(99.7 %id)
DA206789 brain .b 528 to 1093 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA935759 Spleen .b 528 to 1124 2 to 599   capped   598/598
(100 %)
1 diff
(99.9 %id)
L78440   .b 543 to 3130 1 to 2588 exact tiling clone,   2588/2588
(100 %)
0 diff
(100 %id)
DC387795 small intestine .b 556 to 1130 1 to 576       576/576
(100 %)
2 diff
(99.7 %id)
DB466714 hippocampus .b 559 to 995 1 to 438       438/438
(100 %)
3 diff
(99.4 %id)
DB482342 hippocampus .b 559 to 1050 1 to 492       492/492
(100 %)
1 diff
(99.8 %id)
DA816347   .b 561 to 1118 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
AL691825   .b 572 to 820 1 to 249       249/249
(100 %)
3 diff
(98.8 %id)
BM918571 pooled pancreas and spleen .b 574 to 1564 1 to 1003       1003/1085
(92 %)
24 diff
(97.8 %id)
CB993972 placenta, pre-eclamptic placenta .b 575 to 1390 28 to 847       820/847
(96 %)
15 diff
(98.3 %id)
CB993457 placenta, pre-eclamptic placenta .b 575 to 1254 28 to 715       688/858
(80 %)
22 diff
(97.5 %id)
CB992130 placenta, pre-eclamptic placenta .b 575 to 904 28 to 360       333/1013
(32 %)
14 diff
(98.7 %id)
CB961839 placenta, pre-eclamptic placenta .b 575 to 1319 28 to 777       750/778
(96 %)
18 diff
(97.7 %id)
DA304125 hippocampus .b 576 to 1131 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA573453   .b 576 to 1104 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DA818362   .b 588 to 1145 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA286522 corpus callosum .b 589 to 1158 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA813957   .b 589 to 1140 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB143767 thymus .b 592 to 1149 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DC399230 testis .c 1 to 569 1 to 569   tiling clone,   569/569
(100 %)
0 diff
(100 %id)
AL705314 human skeletal muscle .c 17 to 500 1 to 484       484/484
(100 %)
3 diff
(99.4 %id)
DC404040 testis .c 17 to 569 1 to 553       553/553
(100 %)
0 diff
(100 %id)
EU304792 testis .c 29 to 605 1 to 577       577/577
(100 %)
0 diff
(100 %id)
AK300868 small intestine .c 265 to 2472 1 to 2208 T433A tiling clone,   2208/2208
(100 %)
2 diff
(100.0 %id)
AB209043 brain .c 1382 to 3208 1 to 1827   tiling clone,   1827/1827
(100 %)
0 diff
(100 %id)
DB317308 brain .c 1936 to 2465 531 to 1       531/531
(100 %)
1 diff
(99.9 %id)
BE936818 ovary .c 2047 to 2223 178 to 1       178/191
(93 %)
6 diff
(96.9 %id)
FN122269 breast carcinoma .c 2069 to 2166 1 to 95       95/108
(87 %)
4 diff
(96.3 %id)
DB510536.
matches multiple genes
testis .c 3021 to 3338 318 to 1   tiling clone, also hits gene chorfoybu 318/319
(99 %)
1 diff
(99.7 %id)
DB450055 testis .d 1 to 475 1 to 473   tiling clone,   473/473
(100 %)
7 diff
(98.6 %id)
AK301172 Spleen .d 284 to 2610 1 to 1958 L32Q L33T Q34M N35D L36Q ... tiling clone, Suspected internal deletion 1958/1958
(100 %)
0 diff
(100 %id)
DC390520 Spleen .d 284 to 1214 1 to 562     Suspected internal deletion 562/562
(100 %)
0 diff
(100 %id)
DC408866 thymus .d 2126 to 2679 1 to 555   tiling clone,   555/555
(100 %)
1 diff
(99.9 %id)
AA310885   .d 2353 to 2744 1 to 392   tiling clone,   392/392
(100 %)
0 diff
(100 %id)
R91623 liver and spleen .e 1 to 391 1 to 395   tiling clone,   395/449
(87 %)
5 diff
(98.9 %id)
R91570 liver and spleen .e 1213 to 1548 343 to 1   tiling clone,   343/374
(91 %)
8 diff
(97.9 %id)
DN991469 brain, whole brain .f 1 to 718 9 to 726 G125X tiling clone,   718/726
(98 %)
0 diff
(100 %id)
BF907625 uterus_tumor .f 334 to 570 257 to 24     Submitted on the opposite strand 234/257
(91 %)
1 diff
(99.7 %id)
BI040324 nervous_tumor .f 545 to 649 1 to 108       108/122
(88 %)
9 diff
(92.7 %id)
BG717165 testis .g 1 to 711 1 to 710 K66T F67I H68S G69W N70K ... tiling clone,   710/710
(100 %)
9 diff
(98.8 %id)
EU304790 Spleen .h 1 to 828 1 to 828   tiling clone,   828/828
(100 %)
1 diff
(99.9 %id)
DC357420   .h 448 to 997 1 to 550       550/550
(100 %)
0 diff
(100 %id)
DC357436   .h 448 to 1008 1 to 561 exact tiling clone,   561/561
(100 %)
0 diff
(100 %id)
BC016694 lung .i 1 to 634 1 to 634 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 634/634
(100 %)
5 diff
(99.3 %id)
BG506572 lung .i 4 to 574 1 to 571 exact available from MGC,   571/571
(100 %)
2 diff
(99.7 %id)
BM715926 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .j 1 to 706 1 to 706 exact tiling clone, fully sequenced,   706/706
(100 %)
2 diff
(99.8 %id)
BM674243 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .j 212 to 708 516 to 19   tiling clone, fully sequenced, AAA   498/498
(100 %)
3 diff
(99.4 %id)
EU304791 Spleen .k 1 to 604 1 to 604 exact tiling clone,   604/604
(100 %)
0 diff
(100 %id)
EU304788 Kidney .l 1 to 552 1 to 552 exact tiling clone,   552/552
(100 %)
1 diff
(99.9 %id)
DA758150   .m 1 to 546 2 to 547 exact tiling clone, capped   546/546
(100 %)
2 diff
(99.7 %id)
BF681027 Prostate .m 179 to 705 1 to 523   tiling clone,   523/811
(64 %)
10 diff
(98.8 %id)
CN294518 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .m 182 to 908 1 to 727   tiling clone,   727/727
(100 %)
2 diff
(99.8 %id)
DR760666 embryonic stem .n-u 1 to 812 1 to 812 exact tiling clone,   812/812
(100 %)
3 diff
(99.7 %id)
BG057365 blood, lymphocyte .o 1 to 471 475 to 5 K23N tiling clone,   471/475
(99 %)
0 diff
(100 %id)
AK001864 placenta Gene STAT4, variant not shown       available from FLJ,      
AK299976   Gene STAT4, variant not shown         Suspected internal deletion, this clone was ignored    
BX113531 placenta Gene STAT4, variant not shown              
EU304793 Pancreas, uterus Gene STAT4, variant not shown         This clone was ignored    
N29523 placenta Gene STAT4, variant not shown              
AA906053 pooled Gene STAT4, variant not shown         This clone was ignored    
AI128441 placenta Gene STAT4, variant not shown              
BG434541 placenta Gene STAT4, variant not shown              
N83515   Gene STAT4, variant not shown         This clone was ignored    
DB325216   Gene STAT4, variant not shown              
DA756566   Gene STAT4, variant not shown       capped      
AU156263 placenta Gene STAT4, variant not shown              
AU135760 placenta Gene STAT4, variant not shown       capped      
CR997866 T-Lymphocytes Gene STAT4, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n-u, .o Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI