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Gene SSX2IPTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
348 supporting clones for gene SSX2IP back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BI829080 brain, medulla .a 1 to 753 1 to 754   tiling clone,   754/754
(100 %)
5 diff
(99.4 %id)
TI_57175811   .a 1 to 753 70 to 823       754/823
(91 %)
10 diff
(98.8 %id)
AY651262   .a 303 to 3378 1 to 3073   tiling clone,   3073/3073
(100 %)
4 diff
(99.9 %id)
NM_001166417.1   .b 1 to 6020 6 to 6025 exact RefSeq,   6025/6025
(100 %)
0 diff
(100 %id)
DB049894 testis .b 187 to 754 2 to 569   tiling clone, capped   568/568
(100 %)
0 diff
(100 %id)
BI560773 testis .b 223 to 987 1 to 769       769/940
(81 %)
23 diff
(97.6 %id)
TI_44349178   .b 228 to 987 92 to 855       764/1026
(74 %)
25 diff
(97.6 %id)
DB455490 testis .b 246 to 707 1 to 462       462/462
(100 %)
2 diff
(99.6 %id)
DB054748 testis .b 247 to 809 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
AY367055 testis .b 261 to 2610 1 to 2350 V232A G576V tiling clone, AAA   2350/2350
(100 %)
7 diff
(99.8 %id)
NM_014021.3   .c 1 to 5897 1 to 5897 exact RefSeq,   5897/5897
(100 %)
0 diff
(100 %id)
AL133046 testis .c 61 to 5688 1 to 5628 C578R tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 5628/5628
(100 %)
3 diff
(100.0 %id)
DA039335 bladder .c 115 to 676 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
CR613292 B cells (Ramos cell line) Cot 25-normalized .c 122 to 2232 1 to 2111 exact tiling clone,   2111/2111
(100 %)
0 diff
(100 %id)
AL561392 B cells from Burkitt lymphoma .c 122 to 1075 1 to 954       954/954
(100 %)
2 diff
(99.8 %id)
NM_001166293.1   .d 1 to 5847 1 to 5847 exact RefSeq,   5847/5847
(100 %)
0 diff
(100 %id)
BG718786 testis .d 3 to 636 1 to 634   tiling clone,   634/634
(100 %)
3 diff
(99.6 %id)
BQ424849 melanotic melanoma, skin .d 10 to 904 1 to 896       896/897
(99 %)
20 diff
(97.8 %id)
DA872884 Prostate .d 12 to 510 81 to 579   capped   499/578
(86 %)
6 diff
(99.0 %id)
AB023140 brain .d 13 to 5847 1 to 5835 exact tiling clone, available from KIAA,   5835/5835
(100 %)
0 diff
(100 %id)
DB031854 testis .d 18 to 566 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
BF979645 testis .d 29 to 699 1 to 672       672/1072
(62 %)
17 diff
(98.5 %id)
BF979366 testis .d 42 to 673 1 to 634       634/634
(100 %)
12 diff
(98.2 %id)
BG717651 testis .d 49 to 605 1 to 564       564/610
(92 %)
20 diff
(96.8 %id)
BX383498   .d 90 to 475 1 to 381       381/381
(100 %)
10 diff
(97.4 %id)
DA785475 brain .d 95 to 675 2 to 584   capped   583/583
(100 %)
3 diff
(99.5 %id)
DA805543 brain .d 98 to 626 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
AK292475 testis .d 113 to 2694 1 to 2582 C578R     2582/2582
(100 %)
2 diff
(100.0 %id)
DB074498 testis .d 114 to 658 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DB116216 thymus .d 115 to 646 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
BC033637 Eye, retinoblastoma .d 137 to 3325 12 to 3200 exact available from MGC, AAA   3189/3189
(100 %)
1 diff
(100.0 %id)
BM478453 eye, retinoblastoma .d 137 to 879 1 to 742       744/1139
(65 %)
14 diff
(98.8 %id)
CN361977 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 145 to 813 1 to 669       669/669
(100 %)
2 diff
(99.8 %id)
DA485506 brain .d 160 to 742 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
BC035580.
matches multiple genes
embryonal carcinoma, cell line, testis, Testis, embryonal carcinoma .d 192 to 3325 1 to 3134 exact available from MGC, AAA also hits gene MKL1 3134/3134
(100 %)
1 diff
(100.0 %id)
TI_1948139489   .d 272 to 947 122 to 799       678/1358
(49 %)
26 diff
(98.1 %id)
TI_1948139490   .d 272 to 1205 122 to 1047       926/1306
(70 %)
28 diff
(97.9 %id)
TI_1948139732   .d 272 to 952 117 to 798       682/1395
(48 %)
17 diff
(98.8 %id)
TI_1948139733   .d 272 to 1205 118 to 1053       936/1329
(70 %)
28 diff
(97.9 %id)
TI_1948139993   .d 272 to 950 117 to 802       686/1435
(47 %)
32 diff
(97.8 %id)
TI_1948139994   .d 272 to 1180 120 to 1039       920/1356
(67 %)
36 diff
(97.4 %id)
TI_1948140246   .d 272 to 939 123 to 790       668/1319
(50 %)
19 diff
(98.6 %id)
TI_1948140247   .d 272 to 1203 116 to 1049       934/1327
(70 %)
26 diff
(98.1 %id)
CV030843 mixed .d 277 to 890 1 to 614       614/614
(100 %)
4 diff
(99.4 %id)
EL735015 mixed .d 277 to 883 1 to 607       607/607
(100 %)
3 diff
(99.6 %id)
BF980287 testis .d 1387 to 2049 689 to 28       615/996
(61 %)
24 diff
(97.6 %id)
BX330879   .d 1492 to 2212 729 to 5       725/926
(78 %)
18 diff
(98.1 %id)
BF979920 testis .d 1893 to 2531 654 to 17       638/883
(72 %)
2 diff
(99.8 %id)
BM721181 eye, fetal eye .e 1 to 753 1 to 754   tiling clone,   754/754
(100 %)
3 diff
(99.7 %id)
DA799909 brain .e 102 to 646 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DB098414 testis .e 133 to 704 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
BP244325 Kidney .e 157 to 695 1 to 540       540/582
(92 %)
6 diff
(99.0 %id)
DA476969   .e 2522 to 3077 2 to 557   tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
DA112703 cerebellum .e 2524 to 3116 2 to 594   tiling clone, capped   593/593
(100 %)
0 diff
(100 %id)
DA175286 amygdala .e 2524 to 3073 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DA412913 thalamus .e 2525 to 3086 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
AI884347 serous papillary carcinoma, high grade, 2pooled tumors, uterus .e 2611 to 3101 503 to 13   AAA   491/491
(100 %)
0 diff
(100 %id)
BF223279 pooled germ cell tumors .e 2727 to 3044 207 to 524     Submitted on the opposite strand 318/524
(60 %)
6 diff
(98.9 %id)
AI192405 uterus .e 2804 to 3046 243 to 1       243/243
(100 %)
0 diff
(100 %id)
CF124087 CNCAP(3)T-225 cell line, Prostate .e 2825 to 3085 38 to 297   AAA   260/297
(87 %)
6 diff
(98.0 %id)
FN157971 breast carcinoma .e 3014 to 3122 109 to 1     Submitted on the opposite strand 109/110
(99 %)
0 diff
(100 %id)
BF507731   .e 3031 to 3268 255 to 18   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 238/238
(100 %)
5 diff
(97.9 %id)
AI572351 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 3065 to 3268 204 to 1   tiling clone,   204/204
(100 %)
0 diff
(100 %id)
DB476757 hippocampus .f 1 to 488 6 to 493       493/493
(100 %)
0 diff
(100 %id)
DB476934 hippocampus .f 1 to 500 6 to 505   tiling clone,   505/513
(98 %)
1 diff
(99.9 %id)
DB483215 hippocampus .f 1 to 491 6 to 496       496/496
(100 %)
0 diff
(100 %id)
NM_001166295.1   .f 1 to 5838 6 to 5843 exact RefSeq,   5843/5843
(100 %)
0 diff
(100 %id)
TI_44348198   .f 186 to 864 118 to 796       679/796
(85 %)
6 diff
(99.3 %id)
BI559545 testis .f 189 to 864 1 to 676       676/676
(100 %)
4 diff
(99.5 %id)
AK316472 thymus .f 218 to 2456 1 to 2239 L265P tiling clone,   2239/2239
(100 %)
3 diff
(99.9 %id)
DC409672 thymus .f 218 to 818 1 to 601       601/601
(100 %)
0 diff
(100 %id)
DC324098 brain .f 221 to 790 1 to 570       570/570
(100 %)
1 diff
(99.9 %id)
NM_001166294.1   .g 1 to 5715 1 to 5715 exact RefSeq,   5715/5715
(100 %)
0 diff
(100 %id)
DC415648 trachea .g 59 to 604 1 to 546   tiling clone,   546/546
(100 %)
0 diff
(100 %id)
DC344407 thalamus .g 71 to 627 1 to 557       557/557
(100 %)
0 diff
(100 %id)
DC405501 thymus .g 106 to 675 1 to 570       570/570
(100 %)
1 diff
(99.9 %id)
AV658082 corresponding non cancerous liver tissue .g 111 to 496 1 to 386     Submitted on the opposite strand 386/386
(100 %)
2 diff
(99.5 %id)
AK294057 cerebellum .g 114 to 2046 1 to 1933 C551R tiling clone,   1933/1933
(100 %)
2 diff
(99.9 %id)
DC310912 cerebellum .g 114 to 681 1 to 568       568/568
(100 %)
0 diff
(100 %id)
DC328983 corpus callosum .g 114 to 670 1 to 557       557/557
(100 %)
1 diff
(99.9 %id)
DB497066 hypothalamus .g 116 to 589 1 to 474       474/474
(100 %)
2 diff
(99.6 %id)
AA383226 testis .g 150 to 501 1 to 355       355/355
(100 %)
4 diff
(98.9 %id)
DA389883 thalamus .g 159 to 759 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
BX372332   .g 346 to 1221 865 to 1       865/930
(93 %)
28 diff
(97.0 %id)
CB159291 Liver .g 391 to 974 1 to 584       584/584
(100 %)
0 diff
(100 %id)
AK001710   .g 659 to 3374 1 to 2716   tiling clone, available from FLJ,   2716/2716
(100 %)
3 diff
(99.9 %id)
AU133150   .g 660 to 1482 2 to 823   capped   822/824
(99 %)
15 diff
(98.2 %id)
BE960932 melanotic melanoma, high MDR, skin .g 743 to 1347 1 to 609       609/855
(71 %)
29 diff
(96.7 %id)
DA317817 hippocampus .g 816 to 1355 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
DA101905 cerebellum .g 862 to 1418 2 to 555   capped   554/554
(100 %)
7 diff
(98.8 %id)
DA389024 thalamus .g 959 to 1556 2 to 599   capped   598/598
(100 %)
1 diff
(99.9 %id)
AL582610 B cells from Burkitt lymphoma .g 1043 to 2031 1005 to 17       989/1005
(98 %)
12 diff
(98.9 %id)
DA219655 brain .g 1067 to 1631 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
AL599696   .g 1144 to 1719 15 to 590       576/590
(97 %)
6 diff
(99.0 %id)
TI_1948139491   .g 1159 to 1992 954 to 120       835/1335
(62 %)
32 diff
(97.7 %id)
BM721078 eye, fetal eye .g 1165 to 1840 1 to 676     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 676/676
(100 %)
2 diff
(99.8 %id)
TI_1948139995   .g 1221 to 1992 893 to 120       774/1358
(56 %)
10 diff
(99.3 %id)
DA128452 cerebellum .g 1267 to 1851 2 to 587   capped   586/586
(100 %)
3 diff
(99.5 %id)
TI_154131886   .g 1270 to 2086 898 to 96   AAA   803/964
(83 %)
26 diff
(97.4 %id)
BG530749 embryonal carcinoma, testis .g 1273 to 1977 1 to 709       709/709
(100 %)
12 diff
(98.4 %id)
CA418324 Bone, Human Chondrosarcoma Cell Line .g 1342 to 2086 758 to 19   AAA   740/740
(100 %)
13 diff
(98.3 %id)
BM728884 eye, fetal eye .g 1343 to 1964 1 to 622   fully sequenced,   622/622
(100 %)
0 diff
(100 %id)
TI_1948139734   .g 1351 to 1992 763 to 120       644/1347
(47 %)
7 diff
(99.5 %id)
TI_1948140248   .g 1353 to 1992 760 to 120       641/1471
(43 %)
7 diff
(99.6 %id)
AL042176 testis .g 1476 to 2049 1 to 575       575/577
(99 %)
8 diff
(98.7 %id)
DA221329 brain .g 1480 to 2072 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
BU607994 Human Lung Epithelial cells, lung .g 1534 to 2086 571 to 19   AAA   553/557
(99 %)
4 diff
(99.3 %id)
AW136988   .g 1575 to 2081 523 to 17   AAA   507/507
(100 %)
3 diff
(99.5 %id)
AW241541 pooled germ cell tumors .g 1599 to 2081 482 to 1       482/482
(100 %)
3 diff
(99.4 %id)
AW629277 pooled .g 1599 to 2088 494 to 5       490/494
(99 %)
0 diff
(100 %id)
DB518912 testis .g 1606 to 2084 1 to 479     Submitted on the opposite strand 479/479
(100 %)
1 diff
(99.8 %id)
AA994381 pooled .g 1660 to 1988 331 to 3       329/331
(99 %)
1 diff
(99.7 %id)
AW340223 pooled .g 1676 to 2088 416 to 3       414/416
(99 %)
1 diff
(99.8 %id)
AV752461 Pituitary .g 1677 to 2310 1 to 627       627/838
(74 %)
18 diff
(97.9 %id)
AA707473   .g 1686 to 2081 407 to 12   AAA   396/396
(100 %)
2 diff
(99.5 %id)
AW263131 pooled .g 1688 to 2085 408 to 11   AAA   398/398
(100 %)
2 diff
(99.5 %id)
AW589692 pooled germ cell tumors .g 1712 to 2081 369 to 1       369/369
(100 %)
3 diff
(99.2 %id)
BF216826 brain, glioblastoma .g 1716 to 2259 1 to 543   tiling clone,   543/543
(100 %)
2 diff
(99.7 %id)
AA383225 testis .g 1755 to 2085 331 to 1       331/331
(100 %)
1 diff
(99.7 %id)
BP228110   .g 1776 to 2248 1 to 474       474/566
(83 %)
13 diff
(97.8 %id)
AA909354 pooled .g 1777 to 2083 318 to 13       306/318
(96 %)
1 diff
(99.7 %id)
AI445543 adenocarcinoma, Pancreas .g 1828 to 2084 286 to 30   AAA   257/257
(100 %)
7 diff
(97.3 %id)
DA747217   .g 1857 to 2434 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
AA134837 lung, lung carcinoma .g 1860 to 2387 1 to 516       516/628
(82 %)
19 diff
(97.0 %id)
AI827531 pooled .g 1885 to 2302 421 to 4       418/421
(99 %)
0 diff
(100 %id)
C21478   .g 1913 to 2078 1 to 166       166/166
(100 %)
0 diff
(100 %id)
BF671668 muscle (skeletal) .g 1913 to 2513 1 to 595       595/862
(69 %)
13 diff
(98.5 %id)
BF195136 brain, glioblastoma (pooled) .g 1928 to 2472 545 to 1       545/545
(100 %)
0 diff
(100 %id)
BU742907 eye, fetal eye .g 1934 to 2481 566 to 19   fully sequenced, AAA   548/548
(100 %)
0 diff
(100 %id)
AW026122 brain, glioblastoma (pooled) .g 1974 to 2472 499 to 1       499/499
(100 %)
1 diff
(99.8 %id)
AA993674   .g 1978 to 2473 503 to 8       496/503
(98 %)
0 diff
(100 %id)
AI375402 brain, glioblastoma (pooled) .g 1989 to 2472 484 to 1       484/484
(100 %)
0 diff
(100 %id)
AI421459 brain, glioblastoma (pooled) .g 1990 to 2472 483 to 1       483/483
(100 %)
0 diff
(100 %id)
BM352430 Pancreas, Purified pancreatic islet .g 2089 to 2695 10 to 616       607/616
(98 %)
6 diff
(99.1 %id)
BF979126 melanotic melanoma, high MDR, skin .g 2137 to 2751 1 to 599       599/831
(72 %)
25 diff
(97.0 %id)
BF666514 brain, primitive neuroectoderm .g 2163 to 2859 1 to 685       685/754
(90 %)
25 diff
(96.7 %id)
BI915479 brain .g 2194 to 2921 1 to 728       728/728
(100 %)
6 diff
(99.2 %id)
TI_57239206   .g 2194 to 2921 71 to 798       728/798
(91 %)
6 diff
(99.3 %id)
DB549152 hippocampus .g 2209 to 2664 1 to 456     Submitted on the opposite strand 456/457
(99 %)
2 diff
(99.6 %id)
DA224153 brain .g 2215 to 2819 2 to 607   capped   606/606
(100 %)
2 diff
(99.7 %id)
R17893 whole brain .g 2245 to 2589 1 to 347     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 347/347
(100 %)
4 diff
(98.9 %id)
BG485414 lung .g 2273 to 3066 1 to 814       814/872
(93 %)
36 diff
(95.9 %id)
CB107693 Liver .g 2281 to 2434 1 to 154       154/154
(100 %)
0 diff
(100 %id)
AK023097   .g 2286 to 4944 1 to 2659   available from FLJ,   2659/2659
(100 %)
4 diff
(99.9 %id)
AU130674   .g 2287 to 3173 2 to 884   capped   883/883
(100 %)
12 diff
(98.7 %id)
DB468882 hippocampus .g 2361 to 2773 1 to 415       415/417
(99 %)
4 diff
(99.1 %id)
AA721219 germinal center B cell .g 2364 to 2472 119 to 11   AAA   109/109
(100 %)
0 diff
(100 %id)
AL040005 testis .g 2379 to 2781 1 to 404       404/404
(100 %)
4 diff
(99.1 %id)
BF690739 melanotic melanoma, high MDR, skin .g 2447 to 3105 1 to 647       647/863
(74 %)
23 diff
(97.4 %id)
BX487033   .g 2485 to 2992 1 to 511       511/511
(100 %)
3 diff
(99.5 %id)
CR611558 Placenta Cot 25-normalized .g 2549 to 4417 1 to 1869   tiling clone,   1869/1869
(100 %)
0 diff
(100 %id)
AL549939.
matches multiple genes
placenta, Placenta Cot 25-normalized .g 2549 to 3589 1 to 1031     also hits gene CAMSAP1L1 1031/1044
(98 %)
28 diff
(97.4 %id)
DA133029 alzheimer cortex .g 2584 to 3130 2 to 548   capped   547/548
(99 %)
1 diff
(99.9 %id)
DA297035 hippocampus .g 2587 to 3150 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
TI_57219038   .g 2601 to 3488 63 to 957       895/996
(89 %)
29 diff
(97.1 %id)
BI754068 brain .g 2605 to 3488 1 to 891       891/930
(95 %)
27 diff
(97.1 %id)
DA751611   .g 2620 to 3150 2 to 532   capped   531/531
(100 %)
1 diff
(99.9 %id)
DA133169 alzheimer cortex .g 2622 to 3177 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
CN361978 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .g 2724 to 3440 14 to 731       718/731
(98 %)
6 diff
(99.2 %id)
AA743132 germinal center B cell .g 2740 to 3380 644 to 4       641/646
(99 %)
0 diff
(100 %id)
AA128905 lung, lung carcinoma .g 2758 to 3190 433 to 1       433/435
(99 %)
1 diff
(99.8 %id)
BP211708 cerebrum .g 2769 to 3351 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BM679504 eye, fetal eye .g 2777 to 3392 634 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 616/616
(100 %)
1 diff
(99.9 %id)
AU154532   .g 2834 to 3374 539 to 1       539/539
(100 %)
6 diff
(98.9 %id)
BX371716.
matches multiple genes
placenta, Placenta Cot 25-normalized .g 2849 to 3785 945 to 1     also hits gene CAMSAP1L1 945/952
(99 %)
40 diff
(95.8 %id)
DB545625 hippocampus .g 2881 to 3392 1 to 512     Submitted on the opposite strand 512/512
(100 %)
3 diff
(99.5 %id)
AI761965 Kidney .g 2898 to 3358 9 to 469     Submitted on the opposite strand 461/470
(98 %)
2 diff
(99.6 %id)
CR736239 Kidney .g 2902 to 3392 505 to 15   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 491/491
(100 %)
0 diff
(100 %id)
BF589927 Kidney .g 2903 to 3350 1 to 448     Submitted on the opposite strand 448/448
(100 %)
0 diff
(100 %id)
AW071454 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .g 2904 to 3392 489 to 1       489/489
(100 %)
1 diff
(99.8 %id)
BE465593 malignant melanoma, metastatic to lymphnode, skin .g 2906 to 3392 487 to 1       487/487
(100 %)
0 diff
(100 %id)
AI373769 Kidney .g 2908 to 3374 467 to 1       467/467
(100 %)
0 diff
(100 %id)
AA977045 pooled germ cell tumors .g 2912 to 3393 484 to 3       482/484
(99 %)
0 diff
(100 %id)
Z42712 brain, total brain .g 2914 to 3218 1 to 305       305/305
(100 %)
1 diff
(99.7 %id)
H08271 whole brain .g 2915 to 3321 1 to 414     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 414/478
(86 %)
10 diff
(98.0 %id)
H14956 whole brain .g 2915 to 3316 1 to 415       415/475
(87 %)
16 diff
(96.7 %id)
R18952 whole brain .g 2916 to 3360 1 to 460     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 460/466
(98 %)
42 diff
(91.0 %id)
R59029.
matches multiple genes
whole brain .g 2916 to 3380 1 to 470     also hits gene FBXL15 470/470
(100 %)
9 diff
(98.1 %id)
R52725 whole brain .g 2916 to 3316 1 to 409       409/534
(76 %)
11 diff
(98.0 %id)
H06145 whole brain .g 2916 to 3416 1 to 518     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 518/521
(99 %)
29 diff
(94.5 %id)
H08594 whole brain .g 2916 to 3316 1 to 409       409/462
(88 %)
12 diff
(97.5 %id)
H10970 whole brain .g 2916 to 3316 1 to 411   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 411/483
(85 %)
20 diff
(95.9 %id)
H29195 whole brain .g 2916 to 3432 1 to 520     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 520/522
(99 %)
7 diff
(98.7 %id)
AI274784 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .g 2920 to 3392 490 to 18   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 473/473
(100 %)
0 diff
(100 %id)
DB552116 hippocampus .g 2928 to 3392 1 to 465     Submitted on the opposite strand 465/465
(100 %)
1 diff
(99.8 %id)
BP394929 pancreatic islet .g 2945 to 3362 1 to 418     Submitted on the opposite strand 418/422
(99 %)
1 diff
(99.8 %id)
TI_149276615   .g 2948 to 3393 62 to 509   AAA Submitted on the opposite strand 448/513
(87 %)
3 diff
(99.5 %id)
CB854013 lung, Primary Lung Epithelial Cells .g 2948 to 3399 15 to 469     Submitted on the opposite strand 455/526
(86 %)
6 diff
(98.9 %id)
BF577341 muscle (skeletal) .g 2950 to 3625 1 to 658       658/876
(75 %)
27 diff
(97.0 %id)
BM726764 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .g 2967 to 3395 432 to 4     Submitted on the opposite strand 429/660
(65 %)
0 diff
(100 %id)
H29354 whole brain .g 2978 to 3447 1 to 472     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 472/472
(100 %)
15 diff
(96.9 %id)
AI251468 brain, tumor, 5 pooled (see description) .g 2979 to 3392 413 to 1       413/413
(100 %)
1 diff
(99.8 %id)
AA743113 germinal center B cell .g 2984 to 3380 400 to 4       397/400
(99 %)
0 diff
(100 %id)
AA632584 thyroid .g 2999 to 3392 1 to 394   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 394/394
(100 %)
6 diff
(98.5 %id)
T35672 small intestine .g 3006 to 3353 1 to 348       348/349
(99 %)
2 diff
(99.5 %id)
AW958187   .g 3007 to 3603 1 to 597       597/597
(100 %)
10 diff
(98.4 %id)
DB545468 hippocampus .g 3019 to 3392 1 to 379     Submitted on the opposite strand 379/379
(100 %)
6 diff
(98.5 %id)
AU117645 whole embryo, mainly head .g 3037 to 3764 2 to 728   capped   727/727
(100 %)
1 diff
(99.9 %id)
BM352110 Pancreas, Purified pancreatic islet .g 3055 to 3393 350 to 12       339/350
(96 %)
0 diff
(100 %id)
BP376284 uterus .g 3129 to 3708 1 to 580       580/581
(99 %)
4 diff
(99.4 %id)
BU853912 testis .g 3182 to 3928 1 to 750       750/750
(100 %)
12 diff
(98.4 %id)
BX955442   .g 3200 to 3661 1 to 464       464/464
(100 %)
5 diff
(99.0 %id)
R43139 whole brain .g 3214 to 3392 207 to 27   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 181/181
(100 %)
2 diff
(98.9 %id)
BX370007.
matches multiple genes
placenta, Placenta Cot 25-normalized .g 3215 to 4180 1 to 948     also hits gene CAMSAP1L1 948/950
(99 %)
27 diff
(97.2 %id)
DA306091 hippocampus .g 3235 to 3829 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
BX478893   .g 3282 to 3761 1 to 480       480/480
(100 %)
6 diff
(98.8 %id)
BX477478   .g 3286 to 3835 1 to 549       549/549
(100 %)
3 diff
(99.5 %id)
AI286099 pooled .g 3317 to 3732 416 to 1       416/416
(100 %)
0 diff
(100 %id)
DA170016 amygdala .g 3380 to 3936 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
R58594   .g 3392 to 3543 1 to 153       153/153
(100 %)
4 diff
(97.4 %id)
AI435466 pooled .g 3394 to 3891 502 to 5       498/502
(99 %)
0 diff
(100 %id)
CD250795 Blood vessels - aorta, basilar and artery .g 3479 to 4035 1 to 560       560/751
(74 %)
23 diff
(97.0 %id)
BM691911 eye, human retina .g 3494 to 4081 4 to 591   fully sequenced, Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 588/591
(99 %)
6 diff
(99.0 %id)
Z42188 brain, total brain .g 3501 to 3780 1 to 280       280/280
(100 %)
1 diff
(99.7 %id)
AL574052 placenta, Placenta Cot 25-normalized .g 3513 to 4417 909 to 1       909/909
(100 %)
36 diff
(96.1 %id)
DA570556 whole embryo, mainly head .g 3527 to 4190 2 to 666   capped   665/720
(92 %)
3 diff
(99.6 %id)
AI880100 astrocytoma, brain .g 3537 to 3756 1 to 221     Submitted on the opposite strand 221/221
(100 %)
4 diff
(98.2 %id)
AA532515 normal prostatic epithelial cells, Prostate .g 3539 to 4057 1 to 518       518/574
(90 %)
6 diff
(99.0 %id)
AA531168 normal prostatic epithelial cells, Prostate .g 3541 to 3935 1 to 394       394/401
(98 %)
5 diff
(98.8 %id)
F05167 brain, total brain .g 3551 to 3767 1 to 218       218/218
(100 %)
1 diff
(99.6 %id)
R52746 whole brain .g 3552 to 3960 1 to 416       416/426
(97 %)
10 diff
(97.7 %id)
F12492 brain, total brain .g 3567 to 3870 1 to 304       304/304
(100 %)
0 diff
(100 %id)
T74289 whole brain .g 3568 to 4003 1 to 440       440/442
(99 %)
5 diff
(98.9 %id)
H20898 whole brain .g 3568 to 3977 1 to 415       415/415
(100 %)
14 diff
(96.7 %id)
BX488703   .g 3569 to 4050 1 to 482       482/482
(100 %)
1 diff
(99.8 %id)
BG291491 bladder, transitional cell papilloma, cell line .g 3596 to 4316 1 to 720       720/723
(99 %)
2 diff
(99.8 %id)
AW970378   .g 3603 to 4073 1 to 471       471/471
(100 %)
17 diff
(96.4 %id)
H05546 whole brain .g 3605 to 4069 1 to 473       473/473
(100 %)
16 diff
(96.7 %id)
R24956 whole brain .g 3611 to 3952 1 to 347       347/347
(100 %)
4 diff
(98.9 %id)
R12049 whole brain .g 3622 to 4076 1 to 466     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 466/468
(99 %)
26 diff
(94.5 %id)
AI267301 brain, frontal lobe (see description) .g 3625 to 3763 18 to 156       139/156
(89 %)
6 diff
(96.2 %id)
TI_151794253   .g 3653 to 4248 103 to 700     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 598/975
(61 %)
21 diff
(97.9 %id)
AU133906 ovary, tumor tissue .g 3665 to 4520 2 to 854   capped   853/853
(100 %)
18 diff
(97.9 %id)
CB047575 Kidney .g 3671 to 4003 9 to 341     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 333/341
(97 %)
6 diff
(98.3 %id)
BF824760 head_normal .g 3695 to 4162 1 to 468       468/479
(97 %)
4 diff
(99.2 %id)
BM717763 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .g 3741 to 4053 1 to 313       313/313
(100 %)
0 diff
(100 %id)
BF211766 bone marrow, from chronic myelogenous leukemia .g 3764 to 3830 610 to 672       614/832
(73 %)
19 diff
(97.8 %id)
TI_149279074   .g 3765 to 4451 834 to 137       698/1396
(50 %)
0 diff
(100 %id)
CN361979 embryonic stem cells, DMSO-treated H9 cellline .g 3849 to 4579 1 to 732       732/732
(100 %)
2 diff
(99.8 %id)
AA534808 colon .g 3870 to 4425 556 to 1       556/556
(100 %)
2 diff
(99.7 %id)
AA307820 colon .g 3876 to 4362 1 to 487       487/487
(100 %)
0 diff
(100 %id)
AW960341   .g 3877 to 4430 1 to 552       552/552
(100 %)
7 diff
(98.8 %id)
R52678 whole brain .g 3925 to 4442 550 to 19   AAA   532/538
(98 %)
0 diff
(100 %id)
AW243408 Kidney .g 3962 to 4448 493 to 1       493/493
(100 %)
9 diff
(98.2 %id)
H29196 whole brain .g 3965 to 4448 502 to 16   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 487/488
(99 %)
22 diff
(95.5 %id)
BX101734 whole brain .g 3979 to 4442 484 to 21   AAA   464/470
(98 %)
0 diff
(100 %id)
H10971 whole brain .g 3988 to 4448 488 to 14   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 475/477
(99 %)
21 diff
(95.6 %id)
H08172 whole brain .g 3995 to 4448 473 to 14   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 460/467
(98 %)
10 diff
(97.9 %id)
R44066 whole brain .g 4006 to 4448 470 to 15   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 456/456
(100 %)
19 diff
(95.9 %id)
DB520912 testis .g 4017 to 4477 1 to 467     Submitted on the opposite strand 467/467
(100 %)
6 diff
(98.8 %id)
H06146 whole brain .g 4018 to 4448 460 to 14   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 447/448
(99 %)
18 diff
(96.0 %id)
AI924034 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .g 4022 to 4429 428 to 21   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 408/408
(100 %)
3 diff
(99.3 %id)
AI935801 Kidney .g 4040 to 4468 444 to 16   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 429/429
(100 %)
3 diff
(99.4 %id)
BU728610 eye, human retina .g 4051 to 4448 416 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 398/398
(100 %)
1 diff
(99.8 %id)
BU678727 lung, Primary Lung Epithelial Cells .g 4056 to 4442 412 to 25   AAA   388/394
(98 %)
0 diff
(100 %id)
AI476353 pooled .g 4057 to 4480 424 to 1       424/424
(100 %)
2 diff
(99.6 %id)
CK004403 brain/CNS, Human Brain - Frontal Cortex .g 4058 to 4699 1 to 642       642/642
(100 %)
6 diff
(99.1 %id)
H29270 whole brain .g 4059 to 4448 412 to 14   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 399/449
(88 %)
10 diff
(97.8 %id)
DB535466 hippocampus .g 4061 to 4445 1 to 384     Submitted on the opposite strand 384/384
(100 %)
11 diff
(97.2 %id)
AA837165 germinal center B cell .g 4070 to 4448 396 to 18   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 379/379
(100 %)
0 diff
(100 %id)
AA885348 pooled .g 4098 to 4451 353 to 1       353/353
(100 %)
1 diff
(99.8 %id)
CB047574 Kidney .g 4120 to 4448 367 to 39   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 329/329
(100 %)
3 diff
(99.1 %id)
FN060038 breast carcinoma .g 4122 to 4231 109 to 1     Submitted on the opposite strand 109/109
(100 %)
1 diff
(99.1 %id)
R44575 whole brain .g 4122 to 4448 345 to 14   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 332/339
(97 %)
11 diff
(96.8 %id)
AW592781 pooled .g 4129 to 4451 323 to 1       323/323
(100 %)
0 diff
(100 %id)
AI453170 adenocarcinoma, Pancreas .g 4174 to 4557 392 to 9       384/392
(97 %)
0 diff
(100 %id)
F05006 brain, total brain .g 4203 to 4448 246 to 1       246/248
(99 %)
0 diff
(100 %id)
Z45825 brain, total brain .g 4204 to 4483 1 to 280       280/280
(100 %)
0 diff
(100 %id)
F02193 brain, total brain .g 4229 to 4448 220 to 1       220/220
(100 %)
0 diff
(100 %id)
AA884123 pooled .g 4240 to 4499 261 to 1       261/261
(100 %)
1 diff
(99.7 %id)
D59912   .g 4264 to 4553 290 to 1       290/290
(100 %)
0 diff
(100 %id)
AI565298 pooled .g 4269 to 4464 206 to 11   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 196/196
(100 %)
0 diff
(100 %id)
BU621089 cell lines, Chondrosarcoma .g 4283 to 4944 680 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 662/664
(99 %)
1 diff
(99.9 %id)
BU689988 Human Lung Epithelial cells, lung .g 4290 to 4944 673 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 655/667
(98 %)
1 diff
(99.9 %id)
BU621242 cell lines, Chondrosarcoma .g 4290 to 4944 673 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 655/655
(100 %)
1 diff
(99.9 %id)
TI_151756047   .g 4301 to 4944 728 to 85   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 644/962
(66 %)
31 diff
(96.8 %id)
AI289635 serous papillary carcinoma, high grade, 2pooled tumors, uterus .g 4306 to 4555 254 to 5       250/254
(98 %)
0 diff
(100 %id)
BE220467 carcinoid, lung .g 4379 to 4853 1 to 475     Submitted on the opposite strand 475/475
(100 %)
1 diff
(99.8 %id)
BE220370 carcinoid, lung .g 4379 to 4855 1 to 477     Submitted on the opposite strand 477/477
(100 %)
1 diff
(99.8 %id)
BF223884 carcinoid, lung .g 4382 to 4848 1 to 467     Submitted on the opposite strand 467/467
(100 %)
2 diff
(99.6 %id)
AI702792 carcinoid, lung .g 4397 to 4779 1 to 383   tiling clone, Submitted on the opposite strand 383/384
(99 %)
1 diff
(99.8 %id)
AU152583   .g 4397 to 4944 546 to 1       546/557
(98 %)
9 diff
(98.4 %id)
H92460 pineal gland .g 4398 to 4748 1 to 353       353/358
(98 %)
4 diff
(98.9 %id)
AI912604 carcinoid, lung .g 4401 to 4945 548 to 4       545/548
(99 %)
0 diff
(100 %id)
AU144425 whole embryo, mainly head .g 4405 to 4944 539 to 1       539/550
(98 %)
10 diff
(98.2 %id)
AL040006 testis .g 4434 to 4944 613 to 103   AAA Submitted on the opposite strand 511/511
(100 %)
11 diff
(97.9 %id)
AU145507 whole embryo, mainly head .g 4435 to 4944 509 to 1       509/509
(100 %)
9 diff
(98.3 %id)
DB568089 hypothalamus .g 4463 to 4943 1 to 481     Submitted on the opposite strand 481/482
(99 %)
2 diff
(99.6 %id)
T89021 whole brain .g 4484 to 4911 472 to 32       441/472
(93 %)
27 diff
(94.3 %id)
DB536338 hippocampus .g 4511 to 4958 1 to 449     Submitted on the opposite strand 449/451
(99 %)
3 diff
(99.4 %id)
R37111 whole brain .g 4519 to 4944 445 to 13   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 433/435
(99 %)
11 diff
(97.5 %id)
BF196152 carcinoid, lung .g 4529 to 4945 423 to 7       417/423
(98 %)
0 diff
(100 %id)
AI215847 carcinoid, lung .g 4567 to 4945 382 to 4       379/382
(99 %)
0 diff
(100 %id)
AI244057 Kidney .g 4587 to 4945 359 to 1       359/359
(100 %)
6 diff
(98.4 %id)
F10113 brain, total brain .g 4592 to 4944 353 to 1       353/353
(100 %)
1 diff
(99.8 %id)
AA890547 parathyroid gland, parathyroid tumor .g 4616 to 4945 337 to 8       330/337
(97 %)
0 diff
(100 %id)
EL953042 eyeball .g 4642 to 4944 33 to 334   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 302/334
(90 %)
8 diff
(97.7 %id)
R24450 placenta .g 4659 to 4983 1 to 330       330/336
(98 %)
6 diff
(98.3 %id)
Z38444 brain, total brain .g 4669 to 4944 276 to 1       276/276
(100 %)
1 diff
(99.7 %id)
TI_154106437   .g 4681 to 5506 897 to 84   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 814/958
(84 %)
14 diff
(98.6 %id)
F01415 brain, total brain .g 4683 to 4944 262 to 1       262/262
(100 %)
1 diff
(99.7 %id)
BP395733 pancreatic islet .g 4716 to 4945 1 to 231     Submitted on the opposite strand 231/234
(98 %)
3 diff
(98.8 %id)
BU631256 cell lines, Chondrosarcoma .g 4742 to 5511 788 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 770/770
(100 %)
1 diff
(99.9 %id)
T27268   .g 4763 to 4943 215 to 35     Submitted on the opposite strand 181/215
(84 %)
0 diff
(100 %id)
BU633035 cell lines, Chondrosarcoma .g 4768 to 5506 757 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 739/739
(100 %)
1 diff
(99.9 %id)
CA415280 Chondrosarcoma Grade II, Left Pelvis .g 4776 to 5506 750 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 732/734
(99 %)
2 diff
(99.8 %id)
CA428511 cell lines, Chondrosarcoma .g 4776 to 5506 751 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 733/735
(99 %)
5 diff
(99.4 %id)
BU618267 Cell Line, Chondrosarcoma .g 4787 to 5506 738 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 720/720
(100 %)
0 diff
(100 %id)
AW593744 pooled germ cell tumors .g 4794 to 4945 152 to 1       152/152
(100 %)
0 diff
(100 %id)
TI_154105162   .g 4816 to 5506 784 to 95   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 690/690
(100 %)
1 diff
(99.9 %id)
CA446442 Chondrosarcoma, Left Pubic Bone .g 4838 to 5506 687 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 669/669
(100 %)
0 diff
(100 %id)
CA446819 Chondrosarcoma, Left Pubic Bone .g 4889 to 5506 636 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 618/618
(100 %)
1 diff
(99.9 %id)
BM669153 eye, lens .g 4900 to 5506 626 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 608/608
(100 %)
2 diff
(99.7 %id)
BU738663 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .g 4914 to 5506 611 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 593/593
(100 %)
2 diff
(99.7 %id)
TI_151708097   .g 4933 to 5506 653 to 83   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 571/698
(81 %)
23 diff
(96.8 %id)
DB371507 ovary, tumor tissue .g 4935 to 5506 571 to 1       571/586
(97 %)
21 diff
(96.5 %id)
BQ025847 placenta .g 4984 to 5514 541 to 11       531/541
(98 %)
0 diff
(100 %id)
AW173237 pooled .g 4990 to 5507 518 to 1       518/518
(100 %)
0 diff
(100 %id)
AA934894 pooled .g 5021 to 5509 488 to 1       488/488
(100 %)
1 diff
(99.8 %id)
AA769907 pooled .g 5029 to 5505 478 to 1       478/478
(100 %)
1 diff
(99.8 %id)
H92461 pineal gland .g 5070 to 5482 420 to 1       420/420
(100 %)
9 diff
(97.9 %id)
AW882779 ovary .g 5084 to 5398 1 to 313       313/314
(99 %)
15 diff
(95.3 %id)
CB047932 Prostate .g 5086 to 5198 10 to 123     Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 114/123
(92 %)
6 diff
(95.2 %id)
AW136600   .g 5136 to 5506 388 to 18   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 371/371
(100 %)
9 diff
(97.6 %id)
AI017856 Kidney .g 5160 to 5509 351 to 2       350/351
(99 %)
0 diff
(100 %id)
AW838439 leiomios .g 5197 to 5398 8 to 209       202/210
(96 %)
13 diff
(93.9 %id)
AA897239 pooled .g 5250 to 5506 256 to 1       256/256
(100 %)
1 diff
(99.7 %id)
Z41457 brain, total brain .g 5251 to 5506 255 to 1       255/255
(100 %)
1 diff
(99.7 %id)
R24451 placenta .g 5283 to 5494 221 to 3       219/221
(99 %)
0 diff
(100 %id)
CB047931 Prostate .g 5457 to 5506 73 to 24   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 50/50
(100 %)
1 diff
(98.0 %id)
BI458880 testis .h 1 to 725 6 to 741   tiling clone,   693/744
(93 %)
32 diff
(95.7 %id)
DB453437 testis .h 8 to 512 1 to 505       505/505
(100 %)
1 diff
(99.9 %id)
BC064389 Brain, adult medulla .h 10 to 2461 1 to 2452 exact tiling clone, available from MGC, AAA   2452/2452
(100 %)
2 diff
(100.0 %id)
BM908118 brain, medulla .h 10 to 999 19 to 1020       1002/1076
(93 %)
30 diff
(97.3 %id)
DB025386 testis .h 36 to 585 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB054863 testis .h 43 to 598 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
BP217724 caudate nucleus .h 68 to 649 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA225660 brain .h 69 to 608 2 to 543   capped   542/542
(100 %)
3 diff
(99.5 %id)
DA226225 brain .h 69 to 578 2 to 512   capped   511/511
(100 %)
1 diff
(99.9 %id)
DA230347 brain .h 69 to 629 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA234323 brain .h 69 to 647 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
DB188354 liver, tumor tissue .h 72 to 643 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DN990250 brain, whole brain .h 88 to 840 8 to 760       753/760
(99 %)
6 diff
(99.3 %id)
BI520350 brain, medulla .h 89 to 884 1 to 799       799/832
(96 %)
10 diff
(98.8 %id)
TI_43964084   .h 89 to 884 62 to 860       799/893
(89 %)
16 diff
(98.3 %id)
BP218971 caudate nucleus .h 96 to 668 1 to 573       573/576
(99 %)
3 diff
(99.5 %id)
DB095860 testis .h 111 to 680 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
DB147143 thymus .h 126 to 707 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
BG718842 testis .h 130 to 785 1 to 656       656/656
(100 %)
3 diff
(99.6 %id)
TI_1948216161   .h 245 to 1108 122 to 983   fully sequenced,   862/983
(87 %)
24 diff
(97.6 %id)
TI_1948216319   .h 245 to 1131 125 to 1006   fully sequenced,   882/1006
(87 %)
16 diff
(98.5 %id)
TI_1948216481   .h 245 to 1126 129 to 1012   fully sequenced,   884/1012
(87 %)
19 diff
(98.2 %id)
TI_1948216634   .h 245 to 1133 127 to 1015   fully sequenced, AAA   889/1015
(87 %)
15 diff
(98.6 %id)
CN361980 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .h 830 to 1496 9 to 676       668/676
(98 %)
7 diff
(99.0 %id)
TI_1948216162   .h 1078 to 1917 985 to 132   fully sequenced,   854/985
(86 %)
9 diff
(99.1 %id)
TI_1948216482   .h 1096 to 1933 960 to 118   fully sequenced,   843/960
(87 %)
13 diff
(98.7 %id)
TI_1948216320   .h 1101 to 1933 956 to 118   fully sequenced,   839/956
(87 %)
14 diff
(98.6 %id)
TI_1948216635   .h 1103 to 1933 957 to 119   fully sequenced,   839/957
(87 %)
13 diff
(98.7 %id)
BF838170 head_neck .h 1266 to 1751 19 to 504       486/512
(94 %)
11 diff
(97.9 %id)
AK093173 testis .i 1 to 2271 2 to 2272 L123P L465P tiling clone, available from FLJ,   2272/2272
(100 %)
5 diff
(99.8 %id)
AX747972   .i 1 to 2271 2 to 2272 L123P L465P     2272/2272
(100 %)
5 diff
(99.8 %id)
DB025317 testis .i 1 to 384 2 to 385   capped   384/384
(100 %)
1 diff
(99.8 %id)
CB132558 Liver .i 1072 to 1629 1 to 558       558/558
(100 %)
2 diff
(99.7 %id)
DB336467 testis .i 1682 to 2271 589 to 1       589/589
(100 %)
3 diff
(99.5 %id)
BI462423 testis .j 1 to 767 1 to 770 L73* tiling clone,   770/826
(93 %)
26 diff
(96.9 %id)
DB044007 testis .j 53 to 618 2 to 568   tiling clone, capped   567/567
(100 %)
1 diff
(99.9 %id)
AW188151 pooled .k 1 to 465 465 to 1 L70P tiling clone,   465/465
(100 %)
1 diff
(99.8 %id)
AK021515 whole embryo, mainly head .l 1 to 1501 2 to 1503   tiling clone, available from FLJ,   1503/1503
(100 %)
3 diff
(99.9 %id)
AU117460 whole embryo, mainly head .l 1 to 807 2 to 805   capped   804/832
(96 %)
12 diff
(98.6 %id)
AU144286 whole embryo, mainly head .l 948 to 1502 554 to 1   tiling clone,   554/563
(98 %)
9 diff
(98.5 %id)
BE694886 breast .l 1410 to 1848 1 to 442   tiling clone,   442/442
(100 %)
8 diff
(98.2 %id)
TI_44169835   .l 1534 to 2090 47 to 611       563/741
(75 %)
22 diff
(97.1 %id)
BI551380 brain, hippocampus .l 1550 to 2090 5 to 553   tiling clone,   547/683
(80 %)
22 diff
(96.8 %id)
DB480399 hippocampus .l 1552 to 2065 1 to 514   tiling clone,   514/514
(100 %)
1 diff
(99.9 %id)
DB029369 testis .m 1 to 584 2 to 585 exact tiling clone, capped   584/585
(99 %)
1 diff
(99.9 %id)
TI_149274884   .n 1 to 814 60 to 871 E74X N82D T84A I88L K89T ... tiling clone, Submitted on the opposite strand 814/1073
(75 %)
21 diff
(98.1 %id)
BU676381 lung, Primary Lung Epithelial Cells .n 35 to 732 19 to 716     Submitted on the opposite strand 698/698
(100 %)
0 diff
(100 %id)
AK307336 testis .o 1 to 1148 2 to 1149 exact tiling clone,   1149/1149
(100 %)
2 diff
(99.9 %id)
DB094935 testis .o 1 to 592 2 to 593 exact capped   592/592
(100 %)
0 diff
(100 %id)
DB036634 testis .p 1 to 578 2 to 581 exact tiling clone, capped   580/580
(100 %)
2 diff
(99.7 %id)
BF083555 colon .q-u 1 to 324 328 to 4 Q33P tiling clone,   325/328
(99 %)
0 diff
(100 %id)
BM715699 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .r 1 to 318 1 to 318 exact tiling clone, AAA   318/318
(100 %)
0 diff
(100 %id)
BE094225 breast Gene SSX2IP, variant not shown         Suspected internal deletion, this clone was ignored    
AV660797 corresponding non cancerous liver tissue Gene SSX2IP, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV661842 corresponding non cancerous liver tissue Gene SSX2IP, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
BF571129 melanotic melanoma, high MDR, skin Gene SSX2IP, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q-u, .r Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI