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Gene SSX2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
58 supporting clones for gene SSX2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_003147.4   .a 1 to 1448 1 to 1448 exact RefSeq, AAA   1448/1448
(100 %)
0 diff
(100 %id)
BG396977.
matches multiple genes
melanotic melanoma, skin .a 38 to 830 1 to 794     also hits gene SSX2B 794/1007
(78 %)
31 diff
(97.0 %id)
BG476029.
matches multiple genes
melanotic melanoma, skin .a 38 to 831 1 to 815     also hits gene SSX2B 810/1057
(76 %)
30 diff
(97.2 %id)
BG478295.
matches multiple genes
melanotic melanoma, skin .a 38 to 903 1 to 865   tiling clone, also hits gene SSX2B 863/866
(99 %)
21 diff
(97.6 %id)
BC002818 Placenta, choriocarcinoma .a 39 to 1448 1 to 1412   tiling clone, available from MGC, AAA   1412/1412
(100 %)
1 diff
(100.0 %id)
BC071827 Skin, melanotic melanoma. .a 39 to 1448 1 to 1412   available from MGC, AAA   1412/1412
(100 %)
1 diff
(100.0 %id)
BE890350 melanotic melanoma, skin .a 56 to 816 1 to 775       662/909
(72 %)
60 diff
(93.4 %id)
BE384545.
matches multiple genes
melanotic melanoma, skin .a 57 to 702 1 to 645     also hits gene SSX2B 645/759
(84 %)
6 diff
(99.3 %id)
BE729870.
matches multiple genes
melanotic melanoma, skin .a 57 to 814 1 to 754     also hits gene SSX2B 754/988
(76 %)
15 diff
(98.5 %id)
BE408978.
matches multiple genes
choriocarcinoma, placenta .a 58 to 681 1 to 625     also hits gene SSX2B 625/630
(99 %)
2 diff
(99.7 %id)
BE390290.
matches multiple genes
endometrium, adenocarcinoma cell line, uterus .a 64 to 685 11 to 634     also hits gene SSX2B 624/636
(98 %)
9 diff
(98.6 %id)
BE410794.
matches multiple genes
choriocarcinoma, placenta .a 64 to 721 19 to 677     also hits gene SSX2B 659/798
(82 %)
14 diff
(98.3 %id)
CB156144.
matches multiple genes
Liver .a 66 to 725 1 to 660     also hits gene SSX2B 660/660
(100 %)
0 diff
(100 %id)
TI_1948100366.
matches multiple genes
  .a 101 to 419 123 to 441   fully sequenced, also hits gene SSX2B 319/340
(93 %)
6 diff
(98.3 %id)
TI_1948100519.
matches multiple genes
  .a 105 to 419 126 to 440   fully sequenced, also hits gene SSX2B 315/339
(92 %)
6 diff
(98.3 %id)
CV026298.
matches multiple genes
mixed .a 109 to 592 1 to 484     also hits gene SSX2B 484/484
(100 %)
5 diff
(99.0 %id)
TI_1948100858.
matches multiple genes
  .a 318 to 777 332 to 791     also hits gene SSX2B 374/1341
(27 %)
23 diff
(98.3 %id)
TI_1948100367.
matches multiple genes
  .a 358 to 775 549 to 132   fully sequenced, also hits gene SSX2B 418/549
(76 %)
0 diff
(100 %id)
TI_1948100520.
matches multiple genes
  .a 377 to 779 530 to 128   fully sequenced, also hits gene SSX2B 403/430
(93 %)
0 diff
(100 %id)
AF190791.
matches multiple genes
  .a 439 to 874 1 to 436   tiling clone, also hits gene SSX2B 436/436
(100 %)
0 diff
(100 %id)
BG104299.
matches multiple genes
melanotic melanoma, skin .b 1 to 763 1 to 754 N118M D119I L120W D121I N122M ... tiling clone, also hits gene SSX2B 754/757
(99 %)
17 diff
(97.8 %id)
BE391023.
matches multiple genes
endometrium, adenocarcinoma cell line, uterus .b 21 to 678 1 to 661   tiling clone, also hits gene SSX2B 661/662
(99 %)
8 diff
(98.8 %id)
BC103863.
matches multiple genes
PCR rescued clones .c 1 to 802 1 to 802 exact tiling clone, also hits gene SSX2B 802/805
(99 %)
3 diff
(99.7 %id)
BI560469.
matches multiple genes
testis .c 4 to 788 8 to 793     also hits gene SSX2B 786/793
(99 %)
17 diff
(97.9 %id)
TI_44349444.
matches multiple genes
  .c 4 to 788 92 to 877     also hits gene SSX2B 786/877
(89 %)
17 diff
(98.1 %id)
NM_175698.1   .c 31 to 1332 1 to 1302   RefSeq, AAA   1302/1302
(100 %)
0 diff
(100 %id)
Z49105 spleen affected by Hodgkin disease .c 41 to 1331 1 to 1290   tiling clone, AAA   1290/1290
(100 %)
9 diff
(99.4 %id)
X86175.
matches multiple genes
  .c 48 to 813 1 to 766     also hits gene SSX2B 766/766
(100 %)
0 diff
(100 %id)
CB143725.
matches multiple genes
Liver .c 53 to 517 20 to 484     also hits gene SSX2B 465/484
(96 %)
6 diff
(98.8 %id)
BU161779.
matches multiple genes
melanotic melanoma, skin .c 65 to 908 1 to 850     also hits gene SSX2B 850/887
(95 %)
8 diff
(99.1 %id)
BQ231752.
matches multiple genes
melanotic melanoma, skin .c 66 to 840 1 to 793     also hits gene SSX2B 793/950
(83 %)
38 diff
(96.0 %id)
BU194624.
matches multiple genes
melanotic melanoma, skin .c 66 to 859 1 to 804     also hits gene SSX2B 804/836
(96 %)
19 diff
(97.8 %id)
CD243530.
matches multiple genes
testis .c 66 to 422 1 to 366     also hits gene SSX2B 366/850
(43 %)
14 diff
(98.4 %id)
BG333981.
matches multiple genes
melanotic melanoma, skin .c 68 to 867 1 to 806     also hits gene SSX2B 806/948
(85 %)
23 diff
(97.6 %id)
BC007343.
matches multiple genes
Skin, melanotic melanoma. .c 69 to 1332 1 to 1262   tiling clone, available from MGC, AAA also hits gene SSX2B 1262/1262
(100 %)
3 diff
(99.8 %id)
BC016957.
matches multiple genes
Skin, melanotic melanoma. .c 69 to 1331 1 to 1261   tiling clone, available from MGC, AAA also hits gene SSX2B 1261/1261
(100 %)
2 diff
(99.9 %id)
CB144604.
matches multiple genes
Liver .c 72 to 366 1 to 295     also hits gene SSX2B 295/295
(100 %)
1 diff
(99.7 %id)
CB158955.
matches multiple genes
Liver .c 87 to 688 1 to 602     also hits gene SSX2B 602/602
(100 %)
0 diff
(100 %id)
BE891434.
matches multiple genes
melanotic melanoma, skin .c 90 to 839 1 to 743     also hits gene SSX2B 741/867
(85 %)
29 diff
(96.7 %id)
BM806411.
matches multiple genes
melanotic melanoma, skin .c 98 to 1001 24 to 936   tiling clone, also hits gene SSX2B 913/979
(93 %)
29 diff
(97.1 %id)
BE387586.
matches multiple genes
melanotic melanoma, skin .c 99 to 797 85 to 798     also hits gene SSX2B 685/848
(80 %)
42 diff
(95.1 %id)
Z49106.
matches multiple genes
malignant melanoma tumor specimen .c 117 to 294 8 to 186     also hits gene SSX2B 179/190
(94 %)
9 diff
(95.3 %id)
TI_1948089341.
matches multiple genes
  .c 135 to 380 125 to 370     also hits gene SSX2B 246/270
(91 %)
7 diff
(97.5 %id)
TI_1948089543.
matches multiple genes
  .c 135 to 368 126 to 359     also hits gene SSX2B 234/257
(91 %)
8 diff
(96.9 %id)
TI_1948089721.
matches multiple genes
  .c 138 to 704 131 to 697     also hits gene SSX2B 567/1108
(51 %)
15 diff
(98.7 %id)
BC069313.
matches multiple genes
PCR rescued clones .c 139 to 705 1 to 567   available from MGC, also hits gene SSX2B 567/567
(100 %)
3 diff
(99.5 %id)
CV027202.
matches multiple genes
mixed .c 139 to 704 1 to 566     also hits gene SSX2B 566/662
(85 %)
3 diff
(99.6 %id)
BQ222907.
matches multiple genes
melanotic melanoma, skin .c 143 to 1003 1 to 861     also hits gene SSX2B 861/863
(99 %)
4 diff
(99.6 %id)
S79894.
matches multiple genes
  .c 336 to 486 15 to 165     also hits gene SSX2B 151/165
(91 %)
6 diff
(96.4 %id)
TI_1948089544.
matches multiple genes
  .c 407 to 704 425 to 128     also hits gene SSX2B 298/325
(91 %)
0 diff
(100 %id)
S79332   .c 467 to 813 239 to 585       349/585
(59 %)
6 diff
(99.0 %id)
X79200   .c 467 to 1120 59 to 709       653/709
(92 %)
9 diff
(98.8 %id)
CB158928.
matches multiple genes
Liver .c 572 to 1201 1 to 628     also hits gene SSX2B 628/628
(100 %)
1 diff
(99.9 %id)
BM453411 melanotic melanoma, skin .c 918 to 1332 1 to 413   AAA   413/432
(95 %)
2 diff
(99.6 %id)
DB082908.
matches multiple genes
testis .d 1 to 559 2 to 560 exact tiling clone, capped also hits gene SSX2B 559/559
(100 %)
0 diff
(100 %id)
BU189362.
matches multiple genes
melanotic melanoma, skin .d 27 to 553 36 to 566     also hits gene SSX2B 531/1006
(52 %)
15 diff
(98.6 %id)
AL040237.
matches multiple genes
testis .e 1 to 406 1 to 406   tiling clone, also hits gene SSX2B 406/406
(100 %)
1 diff
(99.8 %id)
TI_43963517.
matches multiple genes
  .e 30 to 952 36 to 973 N82M D83I L84W D85I N86M ... fully sequenced, also hits gene SSX2B 938/973
(96 %)
63 diff
(93.6 %id)
BI520165.
matches multiple genes
brain, medulla .e 31 to 952 1 to 937 N82M D83I L84W D85I N86M ... tiling clone, fully sequenced, also hits gene SSX2B 937/937
(100 %)
63 diff
(93.3 %id)
BI520808.
matches multiple genes
brain, medulla .e 922 to 1642 743 to 19   tiling clone, fully sequenced, also hits gene SSX2B 725/743
(97 %)
19 diff
(97.5 %id)
TI_43963518.
matches multiple genes
  .e 922 to 1642 743 to 19   fully sequenced, also hits gene SSX2B 725/743
(97 %)
19 diff
(97.5 %id)
BF770840.
matches multiple genes
epid_tumor .e 1070 to 1458 7 to 389   tiling clone, also hits gene SSX2B 383/389
(98 %)
6 diff
(98.5 %id)
BE378730.
matches multiple genes
endometrium, adenocarcinoma cell line, uterus .f 1 to 850 1 to 851 exact tiling clone, also hits gene SSX2B 851/854
(99 %)
33 diff
(96.2 %id)
BG104299.
matches multiple genes
melanotic melanoma, skin B.a 1 to 763 1 to 754 N118M D119I L120W D121I N122M ... tiling clone, also hits gene SSX2B 754/757
(99 %)
16 diff
(97.9 %id)
BE391023.
matches multiple genes
endometrium, adenocarcinoma cell line, uterus B.a 21 to 678 1 to 661   tiling clone, also hits gene SSX2B 661/662
(99 %)
8 diff
(98.8 %id)
BC103863.
matches multiple genes
PCR rescued clones B.b 1 to 802 1 to 802 exact tiling clone, also hits gene SSX2B 802/805
(99 %)
3 diff
(99.7 %id)
BI560469.
matches multiple genes
testis B.b 4 to 788 8 to 793     also hits gene SSX2B 786/793
(99 %)
17 diff
(97.9 %id)
TI_44349444.
matches multiple genes
  B.b 4 to 788 92 to 877     also hits gene SSX2B 786/877
(89 %)
17 diff
(98.1 %id)
X86175.
matches multiple genes
  B.b 48 to 813 1 to 766     also hits gene SSX2B 766/766
(100 %)
0 diff
(100 %id)
BU161779.
matches multiple genes
melanotic melanoma, skin B.b 65 to 908 1 to 850     also hits gene SSX2B 850/887
(95 %)
8 diff
(99.1 %id)
BQ231752.
matches multiple genes
melanotic melanoma, skin B.b 66 to 840 1 to 793     also hits gene SSX2B 793/950
(83 %)
38 diff
(96.0 %id)
BU194624.
matches multiple genes
melanotic melanoma, skin B.b 66 to 859 1 to 804     also hits gene SSX2B 804/836
(96 %)
19 diff
(97.8 %id)
CD243530.
matches multiple genes
testis B.b 66 to 422 1 to 366     also hits gene SSX2B 366/850
(43 %)
14 diff
(98.4 %id)
BG333981.
matches multiple genes
melanotic melanoma, skin B.b 68 to 867 1 to 806     also hits gene SSX2B 806/948
(85 %)
23 diff
(97.6 %id)
BC007343.
matches multiple genes
Skin, melanotic melanoma. B.b 69 to 1336 1 to 1262   tiling clone, available from MGC, AAA also hits gene SSX2B 1262/1262
(100 %)
4 diff
(99.7 %id)
BC016957.
matches multiple genes
Skin, melanotic melanoma. B.b 69 to 1335 1 to 1261   tiling clone, available from MGC, AAA also hits gene SSX2B 1261/1261
(100 %)
3 diff
(99.8 %id)
CB144604.
matches multiple genes
Liver B.b 72 to 366 1 to 295     also hits gene SSX2B 295/295
(100 %)
1 diff
(99.7 %id)
CB158955.
matches multiple genes
Liver B.b 87 to 688 1 to 602     also hits gene SSX2B 602/602
(100 %)
0 diff
(100 %id)
BE891434.
matches multiple genes
melanotic melanoma, skin B.b 90 to 839 1 to 743     also hits gene SSX2B 741/867
(85 %)
29 diff
(96.7 %id)
BM806411.
matches multiple genes
melanotic melanoma, skin B.b 98 to 1001 24 to 936   tiling clone, also hits gene SSX2B 913/979
(93 %)
27 diff
(97.3 %id)
BE387586.
matches multiple genes
melanotic melanoma, skin B.b 99 to 797 85 to 798     also hits gene SSX2B 685/848
(80 %)
42 diff
(95.1 %id)
Z49106.
matches multiple genes
malignant melanoma tumor specimen B.b 117 to 294 8 to 186     also hits gene SSX2B 179/190
(94 %)
9 diff
(95.3 %id)
TI_1948089341.
matches multiple genes
  B.b 135 to 380 125 to 370     also hits gene SSX2B 246/270
(91 %)
7 diff
(97.5 %id)
TI_1948089543.
matches multiple genes
  B.b 135 to 368 126 to 359     also hits gene SSX2B 234/257
(91 %)
7 diff
(97.3 %id)
TI_1948089721.
matches multiple genes
  B.b 138 to 704 131 to 697     also hits gene SSX2B 567/1108
(51 %)
14 diff
(98.8 %id)
BC069313.
matches multiple genes
PCR rescued clones B.b 139 to 705 1 to 567   available from MGC, also hits gene SSX2B 567/567
(100 %)
3 diff
(99.5 %id)
CV027202.
matches multiple genes
mixed B.b 139 to 704 1 to 566     also hits gene SSX2B 566/662
(85 %)
3 diff
(99.6 %id)
BQ222907.
matches multiple genes
melanotic melanoma, skin B.b 143 to 1003 1 to 861     also hits gene SSX2B 861/863
(99 %)
4 diff
(99.6 %id)
S79894.
matches multiple genes
  B.b 336 to 486 15 to 165     also hits gene SSX2B 151/165
(91 %)
6 diff
(96.4 %id)
TI_1948089544.
matches multiple genes
  B.b 407 to 704 425 to 128     also hits gene SSX2B 298/325
(91 %)
0 diff
(100 %id)
CB158928.
matches multiple genes
Liver B.b 572 to 1205 1 to 628     also hits gene SSX2B 628/628
(100 %)
2 diff
(99.7 %id)
BG396977.
matches multiple genes
melanotic melanoma, skin B.c 1 to 793 1 to 794 N82M D83I L84W D85I N86M ...   also hits gene SSX2B 794/1007
(78 %)
31 diff
(97.0 %id)
BG476029.
matches multiple genes
melanotic melanoma, skin B.c 1 to 794 1 to 815 K39Q M40D K41E A42S S43L ...   also hits gene SSX2B 810/1057
(76 %)
30 diff
(97.2 %id)
BG478295.
matches multiple genes
melanotic melanoma, skin B.c 1 to 866 1 to 865 E138R L139A C140V P145T T146N ... tiling clone, also hits gene SSX2B 863/866
(99 %)
21 diff
(97.6 %id)
BE384545.
matches multiple genes
melanotic melanoma, skin B.c 20 to 665 1 to 645     also hits gene SSX2B 645/759
(84 %)
6 diff
(99.3 %id)
BE729870.
matches multiple genes
melanotic melanoma, skin B.c 20 to 777 1 to 754 F7L A8Q R9G R10D T12R ...   also hits gene SSX2B 754/988
(76 %)
15 diff
(98.5 %id)
BE408978.
matches multiple genes
choriocarcinoma, placenta B.c 21 to 644 1 to 625     also hits gene SSX2B 625/630
(99 %)
2 diff
(99.7 %id)
BE390290.
matches multiple genes
endometrium, adenocarcinoma cell line, uterus B.c 27 to 648 11 to 634     also hits gene SSX2B 624/636
(98 %)
9 diff
(98.6 %id)
BE410794.
matches multiple genes
choriocarcinoma, placenta B.c 27 to 684 19 to 677     also hits gene SSX2B 659/798
(82 %)
14 diff
(98.3 %id)
CB156144.
matches multiple genes
Liver B.c 29 to 688 1 to 660     also hits gene SSX2B 660/660
(100 %)
0 diff
(100 %id)
TI_1948100366.
matches multiple genes
  B.c 64 to 382 123 to 441   fully sequenced, also hits gene SSX2B 319/340
(93 %)
6 diff
(98.3 %id)
TI_1948100519.
matches multiple genes
  B.c 68 to 382 126 to 440   fully sequenced, also hits gene SSX2B 315/339
(92 %)
6 diff
(98.3 %id)
CV026298.
matches multiple genes
mixed B.c 72 to 555 1 to 484     also hits gene SSX2B 484/484
(100 %)
5 diff
(99.0 %id)
TI_1948100858.
matches multiple genes
  B.c 281 to 740 332 to 791     also hits gene SSX2B 374/1341
(27 %)
23 diff
(98.3 %id)
TI_1948100367.
matches multiple genes
  B.c 321 to 738 549 to 132   fully sequenced, also hits gene SSX2B 418/549
(76 %)
0 diff
(100 %id)
TI_1948100520.
matches multiple genes
  B.c 340 to 742 530 to 128   fully sequenced, also hits gene SSX2B 403/430
(93 %)
0 diff
(100 %id)
AF190791.
matches multiple genes
  B.c 402 to 837 1 to 436   tiling clone, also hits gene SSX2B 436/436
(100 %)
0 diff
(100 %id)
CB143725.
matches multiple genes
Liver B.d 1 to 465 20 to 484     also hits gene SSX2B 465/484
(96 %)
6 diff
(98.8 %id)
DB082908.
matches multiple genes
testis B.d 1 to 559 2 to 560 exact tiling clone, capped also hits gene SSX2B 559/559
(100 %)
0 diff
(100 %id)
BU189362.
matches multiple genes
melanotic melanoma, skin B.d 27 to 553 36 to 566     also hits gene SSX2B 531/1006
(52 %)
15 diff
(98.6 %id)
AL040237.
matches multiple genes
testis B.e 1 to 406 1 to 406   tiling clone, also hits gene SSX2B 406/406
(100 %)
1 diff
(99.8 %id)
TI_43963517.
matches multiple genes
  B.e 30 to 959 36 to 980 N82M D83I L84W D85I N86M ... fully sequenced, also hits gene SSX2B 945/980
(96 %)
63 diff
(93.6 %id)
BI520165.
matches multiple genes
brain, medulla B.e 31 to 959 1 to 944 N82M D83I L84W D85I N86M ... tiling clone, fully sequenced, also hits gene SSX2B 944/944
(100 %)
63 diff
(93.4 %id)
BI520808.
matches multiple genes
brain, medulla B.e 929 to 1642 736 to 19   tiling clone, fully sequenced, also hits gene SSX2B 718/736
(97 %)
19 diff
(97.5 %id)
TI_43963518.
matches multiple genes
  B.e 929 to 1642 736 to 19   fully sequenced, also hits gene SSX2B 718/736
(97 %)
19 diff
(97.5 %id)
BF770840.
matches multiple genes
epid_tumor B.e 1070 to 1458 7 to 389   tiling clone, also hits gene SSX2B 383/389
(98 %)
6 diff
(98.5 %id)
BE378730.
matches multiple genes
endometrium, adenocarcinoma cell line, uterus B.f 1 to 850 1 to 851 exact tiling clone, also hits gene SSX2B 851/854
(99 %)
33 diff
(96.2 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI