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Gene SSTR1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
63 supporting clones for gene SSTR1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX248780 HeLa cells .a 1 to 1307 1 to 1307   tiling clone,   1307/1307
(100 %)
0 diff
(100 %id)
AL556152 placenta .a 1 to 1026 1 to 1018       1018/1088
(93 %)
12 diff
(98.9 %id)
NM_001049.2   .a 1 to 4291 1 to 4291 exact RefSeq, AAA   4291/4291
(100 %)
0 diff
(100 %id)
DA649905   .a 306 to 581 2 to 279   capped   278/278
(100 %)
3 diff
(99.0 %id)
BI547971 brain, hippocampus .a 327 to 1094 6 to 790       785/931
(84 %)
36 diff
(96.2 %id)
BI668215 brain, hypothalamus .a 327 to 966 6 to 650       645/652
(98 %)
21 diff
(96.8 %id)
TI_44166964   .a 327 to 1094 126 to 910       785/1051
(74 %)
36 diff
(96.6 %id)
TI_44346357   .a 327 to 966 84 to 728       645/730
(88 %)
21 diff
(97.2 %id)
DB472724 hippocampus .a 331 to 824 1 to 494       494/495
(99 %)
1 diff
(99.8 %id)
DB481122 hippocampus .a 331 to 821 1 to 491       491/491
(100 %)
1 diff
(99.8 %id)
BC035618 Brain, Lung, Testis, adult, pooled whole .a 344 to 4291 1 to 3948 exact tiling clone, available from MGC, AAA   3948/3948
(100 %)
2 diff
(100.0 %id)
BI819436 pooled brain, lung, testis .a 344 to 1111 1 to 772       772/772
(100 %)
25 diff
(96.8 %id)
TI_57197324   .a 344 to 1111 31 to 802       772/802
(96 %)
6 diff
(99.3 %id)
DB493554 hypothalamus .a 379 to 896 1 to 518       518/518
(100 %)
1 diff
(99.9 %id)
CF147827 mixed .a 609 to 1226 1 to 619       619/701
(88 %)
32 diff
(95.5 %id)
CV030694 mixed .a 618 to 1258 1 to 640       640/647
(98 %)
3 diff
(99.6 %id)
BI224313 cervical carcinoma cell line, cervix .a 644 to 1328 1 to 691       691/741
(93 %)
30 diff
(96.0 %id)
TI_57182186   .a 721 to 1461 27 to 774       748/787
(95 %)
26 diff
(96.7 %id)
TI_57215596   .a 726 to 1450 36 to 759       724/759
(95 %)
6 diff
(99.3 %id)
BI772443 pooled lung and spleen .a 727 to 1461 1 to 742       742/755
(98 %)
22 diff
(97.1 %id)
BX280512 brain .a 730 to 1231 1 to 502       502/502
(100 %)
0 diff
(100 %id)
BI753905 brain .a 730 to 1450 1 to 720       720/720
(100 %)
3 diff
(99.6 %id)
BX390825   .a 813 to 1295 1 to 484       484/510
(94 %)
8 diff
(98.5 %id)
CO959856 mixed .a 1058 to 1790 740 to 23       718/830
(86 %)
0 diff
(100 %id)
BX342217   .a 1190 to 2135 1 to 944       944/944
(100 %)
16 diff
(98.4 %id)
BX342216   .a 1198 to 1645 13 to 459       447/548
(81 %)
6 diff
(99.0 %id)
AW954584   .a 1252 to 1790 11 to 550       540/550
(98 %)
6 diff
(99.0 %id)
DA344811 substantia nigra .b-u 1 to 558 2 to 559   tiling clone, capped   558/558
(100 %)
1 diff
(99.9 %id)
BF876598 lung_tumor .b-u 119 to 294 1 to 176       176/176
(100 %)
0 diff
(100 %id)
BF878834 lung_tumor .b-u 119 to 294 1 to 176       176/176
(100 %)
0 diff
(100 %id)
CK821228 Islets of Langerhans, Pancreas .b-u 175 to 794 1 to 620 exact tiling clone,   620/620
(100 %)
0 diff
(100 %id)
BI962657 Islets of Langerhans, Pancreas .b-u 191 to 751 1 to 561 exact     561/561
(100 %)
0 diff
(100 %id)
BX372173   .b-u 414 to 1328 917 to 5   tiling clone,   913/917
(99 %)
0 diff
(100 %id)
R21109 whole brain .b-u 432 to 855 1 to 435       435/446
(97 %)
16 diff
(96.5 %id)
BU072963 insulinoma, Pancreas .b-u 568 to 1128 1 to 561       561/561
(100 %)
3 diff
(99.5 %id)
BM510310 insulinoma, Pancreas .b-u 716 to 1226 8 to 518       511/518
(98 %)
6 diff
(98.9 %id)
R52599 whole brain .b-u 738 to 955 1 to 217       217/217
(100 %)
1 diff
(99.6 %id)
T65201 whole brain .b-u 741 to 1266 1 to 532       532/534
(99 %)
21 diff
(96.1 %id)
H12167 whole brain .b-u 765 to 1209 1 to 454       454/459
(98 %)
25 diff
(94.6 %id)
F11984 brain, total brain .b-u 771 to 1021 1 to 250       250/250
(100 %)
1 diff
(99.6 %id)
F13186 brain, total brain .b-u 816 to 1167 1 to 352       352/352
(100 %)
0 diff
(100 %id)
AA977679 carcinoid, lung .b-u 826 to 1265 1 to 440     Submitted on the opposite strand 440/440
(100 %)
2 diff
(99.6 %id)
T77028 whole brain .b-u 845 to 1218 1 to 370       370/370
(100 %)
5 diff
(98.7 %id)
AL578470 placenta .b-u 1019 to 2003 1036 to 63   AAA   974/1061
(91 %)
0 diff
(100 %id)
BI254898 cervical carcinoma cell line, cervix .b-u 1233 to 2091 1 to 873   tiling clone,   873/892
(97 %)
30 diff
(96.7 %id)
BU071151 insulinoma, Pancreas .b-u 1447 to 2085 660 to 22   tiling clone, AAA   639/639
(100 %)
0 diff
(100 %id)
BU070951 insulinoma, Pancreas .b-u 1506 to 2085 601 to 22   AAA   580/580
(100 %)
0 diff
(100 %id)
CK821227 Islets of Langerhans, Pancreas .b-u 1511 to 2083 597 to 25   AAA   573/573
(100 %)
0 diff
(100 %id)
BU071007.
matches multiple genes
insulinoma, Pancreas .b-u 1563 to 2085 544 to 22   AAA also hits gene MRPS31 523/523
(100 %)
0 diff
(100 %id)
DB549940 hippocampus .b-u 1613 to 2085 1 to 473     Submitted on the opposite strand 473/473
(100 %)
0 diff
(100 %id)
DB567709 hypothalamus .b-u 1615 to 2085 1 to 471     Submitted on the opposite strand 471/472
(99 %)
1 diff
(99.8 %id)
DB541471 hippocampus .b-u 1622 to 2085 1 to 464     Submitted on the opposite strand 464/464
(100 %)
0 diff
(100 %id)
DB564627 hypothalamus .b-u 1626 to 2085 1 to 460     Submitted on the opposite strand 460/461
(99 %)
1 diff
(99.8 %id)
BE766481 nervous_tumor .b-u 1632 to 1884 281 to 29       253/286
(88 %)
0 diff
(100 %id)
AI129156 senescent fibroblast .b-u 1640 to 2083 457 to 14   AAA   444/444
(100 %)
1 diff
(99.8 %id)
BI789177 Islets of Langerhans, Pancreas .b-u 1643 to 2083 465 to 25   AAA   441/441
(100 %)
0 diff
(100 %id)
AW051270 pooled .b-u 1665 to 2085 432 to 12   AAA   421/421
(100 %)
3 diff
(99.3 %id)
AA889113 pooled .b-u 1675 to 2085 411 to 1       411/411
(100 %)
0 diff
(100 %id)
AA350521 brain .b-u 1749 to 2082 334 to 1       334/334
(100 %)
0 diff
(100 %id)
R62424 whole brain .b-u 1777 to 2085 339 to 25   AAA   315/315
(100 %)
6 diff
(98.1 %id)
T65132 whole brain .b-u 1781 to 2084 310 to 1       310/370
(83 %)
0 diff
(100 %id)
R45542 whole brain .b-u 1796 to 2087 307 to 7   tiling clone,   301/313
(96 %)
0 diff
(100 %id)
F11022 brain, total brain .b-u 1831 to 2085 255 to 1       255/255
(100 %)
1 diff
(99.7 %id)
AI815754 brain, frontal lobe .b-u 1863 to 1989 12 to 138       127/138
(92 %)
6 diff
(95.7 %id)
AW163607 brain, frontal lobe .b-u 1876 to 1941 1 to 66   fully sequenced,   66/66
(100 %)
0 diff
(100 %id)
DB564079 hypothalamus .b-u 1885 to 2085 1 to 203     Submitted on the opposite strand 203/204
(99 %)
12 diff
(94.2 %id)
AW162959 brain, frontal lobe .b-u 1911 to 2029 119 to 1   fully sequenced,   119/119
(100 %)
1 diff
(99.2 %id)
AK290868   Gene SSTR1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI