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Gene TSSK6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
75 supporting clones for gene TSSK6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA418999 cord Blood .a-u 1 to 834 2 to 839   tiling clone, capped   838/845
(99 %)
26 diff
(97.0 %id)
DA602269   .a-u 1 to 570 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA718132   .a-u 1 to 550 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA551018   .a-u 30 to 560 2 to 533   capped   532/532
(100 %)
1 diff
(99.9 %id)
DA769691 brain .a-u 30 to 615 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA770007 brain .a-u 30 to 536 2 to 509   capped   508/508
(100 %)
1 diff
(99.9 %id)
DA869066 Prostate .a-u 30 to 568 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
DA982903 synovial membrane tissue from rheumatioidarthritis .a-u 30 to 583 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB164674 thymus .a-u 30 to 540 2 to 512   capped   511/513
(99 %)
1 diff
(99.9 %id)
DA412585 thalamus .a-u 33 to 578 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
DA440943 tongue, tumor tissue .a-u 33 to 587 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA559234   .a-u 33 to 564 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DB145377 thymus .a-u 34 to 575 2 to 544   capped   543/543
(100 %)
5 diff
(99.1 %id)
DA933689 Spleen .a-u 47 to 611 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BU952248 Pancreas, Purified pancreatic islet .a-u 79 to 607 1 to 529   fully sequenced,   529/529
(100 %)
0 diff
(100 %id)
AF348077   .a-u 510 to 1976 1 to 1467 exact tiling clone,   1467/1467
(100 %)
0 diff
(100 %id)
BE501922 Kidney .a-u 535 to 1047 513 to 1       513/513
(100 %)
0 diff
(100 %id)
NM_032037.2   .a-u 535 to 1976 1 to 1442 exact RefSeq,   1442/1442
(100 %)
0 diff
(100 %id)
BF732681 fibrotheoma, ovary .a-u 562 to 1026 466 to 1       466/466
(100 %)
6 diff
(98.8 %id)
BU951982 Pancreas, Purified pancreatic islet .a-u 577 to 1014 438 to 1   fully sequenced,   438/438
(100 %)
0 diff
(100 %id)
DA515835 brain .a-u 595 to 1099 2 to 508   capped   507/507
(100 %)
3 diff
(99.5 %id)
AI819667 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a-u 628 to 1048 420 to 1       420/421
(99 %)
3 diff
(99.3 %id)
AI580407 Kidney .a-u 637 to 1048 412 to 1       412/412
(100 %)
3 diff
(99.3 %id)
BG723352 testis .a-u 642 to 872 1 to 231       231/231
(100 %)
6 diff
(97.5 %id)
BG772922 testis .a-u 642 to 872 1 to 231       231/231
(100 %)
5 diff
(97.9 %id)
BI460615 testis .a-u 642 to 872 1 to 231       231/231
(100 %)
4 diff
(98.3 %id)
BI463926 testis .a-u 642 to 872 1 to 232       232/232
(100 %)
6 diff
(97.5 %id)
BI559909 testis .a-u 643 to 1337 1 to 695       695/695
(100 %)
21 diff
(97.0 %id)
AK313767 testis .a-u 647 to 1589 1 to 943 exact     943/943
(100 %)
0 diff
(100 %id)
BC014611 testis .a-u 647 to 1975 1 to 1329 exact available from MGC, AAA   1329/1329
(100 %)
3 diff
(99.8 %id)
DB441883 testis .a-u 647 to 1082 1 to 436       436/436
(100 %)
7 diff
(98.4 %id)
DB452292 testis .a-u 647 to 1100 1 to 454       454/454
(100 %)
4 diff
(99.2 %id)
DB455561 testis .a-u 647 to 1115 1 to 469       469/469
(100 %)
0 diff
(100 %id)
BP369770 testis .a-u 647 to 1217 1 to 571       571/571
(100 %)
1 diff
(99.9 %id)
BP370540 testis .a-u 647 to 1195 1 to 549       549/550
(99 %)
20 diff
(96.4 %id)
BP371742 testis .a-u 647 to 1228 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DB022840 testis .a-u 648 to 1200 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB030328 testis .a-u 648 to 1238 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
DB032526 testis .a-u 648 to 1209 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB034081 testis .a-u 648 to 1227 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
TI_44348391   .a-u 649 to 1337 92 to 780       689/780
(88 %)
6 diff
(99.3 %id)
T18864   .a-u 663 to 1047 1 to 383       383/403
(95 %)
6 diff
(98.6 %id)
AI223109   .a-u 667 to 1048 382 to 1       382/388
(98 %)
3 diff
(99.3 %id)
BX113830   .a-u 670 to 1046 1 to 377       377/377
(100 %)
0 diff
(100 %id)
AA883975 pooled .a-u 702 to 1046 342 to 2       341/342
(99 %)
0 diff
(100 %id)
AA860213   .a-u 703 to 1044 342 to 5       338/342
(98 %)
0 diff
(100 %id)
AI479322 pooled .a-u 705 to 1048 345 to 1       345/345
(100 %)
1 diff
(99.8 %id)
AW087713 pooled .a-u 705 to 1048 344 to 1       344/344
(100 %)
0 diff
(100 %id)
AW341589 pooled .a-u 749 to 1008 260 to 1       260/260
(100 %)
0 diff
(100 %id)
AA860223   .a-u 756 to 1046 287 to 2       286/287
(99 %)
0 diff
(100 %id)
AI050685   .a-u 756 to 969 212 to 1       212/212
(100 %)
4 diff
(98.2 %id)
TI_1948102500   .a-u 761 to 1272 126 to 648   fully sequenced,   523/648
(80 %)
6 diff
(99.1 %id)
TI_1948102334   .a-u 767 to 1579 131 to 949       819/1273
(64 %)
20 diff
(98.5 %id)
TI_1948102667   .a-u 767 to 1588 125 to 958       834/1269
(65 %)
22 diff
(98.3 %id)
TI_1948102832   .a-u 767 to 1490 128 to 857       730/1106
(66 %)
22 diff
(98.1 %id)
CV024256 mixed .a-u 768 to 1394 1 to 627       627/627
(100 %)
1 diff
(99.9 %id)
AI831802 B-cell, chronic lymphotic leukemia .a-u 1117 to 1348 1 to 232     Submitted on the opposite strand 232/232
(100 %)
0 diff
(100 %id)
TI_1948102501   .a-u 1242 to 1594 410 to 57   fully sequenced,   354/410
(86 %)
6 diff
(98.6 %id)
AI827749 pooled .a-u 1310 to 1975 694 to 29   AAA   666/671
(99 %)
30 diff
(95.6 %id)
DB520996 testis .a-u 1521 to 1973 1 to 453     Submitted on the opposite strand 453/455
(99 %)
2 diff
(99.6 %id)
AI025487   .a-u 1586 to 1976 393 to 3       391/393
(99 %)
0 diff
(100 %id)
AI024234   .a-u 1588 to 1976 392 to 4       389/392
(99 %)
0 diff
(100 %id)
AW662022 pooled .a-u 1597 to 1976 382 to 3       380/382
(99 %)
0 diff
(100 %id)
AA913074 pooled .a-u 1690 to 1976 286 to 3       284/286
(99 %)
0 diff
(100 %id)
AA608857   .a-u 1691 to 1975 301 to 19   AAA   283/283
(100 %)
2 diff
(99.3 %id)
DB517852 testis .a-u 1698 to 1973 8 to 284     Submitted on the opposite strand 277/286
(96 %)
2 diff
(99.4 %id)
AF329483   .b 1 to 1517 1 to 1517 exact tiling clone, AAA   1517/1517
(100 %)
1 diff
(100.0 %id)
BI828962 brain, medulla .b 615 to 1482 1 to 881       881/881
(100 %)
16 diff
(98.2 %id)
TI_57172521   .b 615 to 1482 33 to 913   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 881/913
(96 %)
12 diff
(98.7 %id)
AI150036   .b 972 to 1331 365 to 6       360/365
(98 %)
0 diff
(100 %id)
AA948538 pooled .c 1 to 316 1 to 308 A7G L8T P9C A10T R11I ... tiling clone, AAA Submitted on the opposite strand 308/308
(100 %)
8 diff
(97.5 %id)
CN315260 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d-u 1 to 262 323 to 62 T52P tiling clone, AAA Submitted on the opposite strand 262/262
(100 %)
6 diff
(97.8 %id)
CN263467 embryonic stem cells, cell lines H1, H7, andH9 .d-u 59 to 266 135 to 342   tiling clone,   208/344
(60 %)
1 diff
(99.8 %id)
AK172841 ileal mucosa Gene TSSK6, variant not shown       available from FLJ, AAA This clone was ignored    
AK058166 testis Gene TSSK6, variant not shown       available from FLJ, Suspected internal deletion, suspected internal deletion, this clone was ignored    
BP371231 testis Gene TSSK6, variant not shown         Suspected internal deletion, this clone was ignored    
BF972639 leiomyosarcoma cell line, uterus Gene TSSK6, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a-u, .b, .c, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI