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Gene SS18L1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
166 supporting clones for gene SS18L1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC068993 Lymph, Burkitt lymphoma .a 1 to 1873 1 to 1873 exact tiling clone, available from MGC, AAA   1873/1873
(100 %)
1 diff
(100.0 %id)
BI226301 Burkitt lymphoma, lymph .a 1 to 556 1 to 561       561/656
(85 %)
21 diff
(96.8 %id)
BE559530 Burkitt lymphoma, lymph .a 21 to 789 1 to 758       758/759
(99 %)
23 diff
(97.0 %id)
TI_1948234859   .a 406 to 1170 126 to 891   fully sequenced,   766/891
(85 %)
7 diff
(99.3 %id)
TI_1948235026   .a 406 to 1072 123 to 789   fully sequenced,   667/789
(84 %)
7 diff
(99.2 %id)
TI_1948235195   .a 406 to 1072 122 to 788   fully sequenced,   667/788
(84 %)
6 diff
(99.3 %id)
TI_1948235365   .a 406 to 1140 133 to 873       741/1461
(50 %)
20 diff
(98.7 %id)
EL736554 mixed .a 410 to 1053 1 to 643       643/643
(100 %)
1 diff
(99.9 %id)
TI_1948235027   .a 1042 to 1614 697 to 125   fully sequenced,   573/697
(82 %)
0 diff
(100 %id)
TI_1948235196   .a 1042 to 1614 695 to 123   fully sequenced,   573/695
(82 %)
0 diff
(100 %id)
TI_1948234860   .a 1109 to 1614 629 to 124   fully sequenced,   506/629
(80 %)
0 diff
(100 %id)
DC332044 hippocampus .b 1 to 534 1 to 535   tiling clone,   535/535
(100 %)
1 diff
(99.9 %id)
DC374728 brain .b 3 to 568 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
DC375156 brain .b 4 to 559 1 to 556       556/556
(100 %)
0 diff
(100 %id)
DC347116 tongue, tumor tissue .b 13 to 601 1 to 589       589/589
(100 %)
0 diff
(100 %id)
DC374478 brain .b 23 to 589 1 to 567       567/567
(100 %)
0 diff
(100 %id)
AK299881 brain .b 29 to 1409 1 to 1381 exact tiling clone,   1381/1381
(100 %)
1 diff
(100.0 %id)
BC034494 testis .c 1 to 3694 1 to 3695 M189I tiling clone, available from MGC, AAA   3695/3695
(100 %)
6 diff
(99.9 %id)
AI653284 pooled germ cell tumors .c 838 to 1510 674 to 1       674/758
(88 %)
9 diff
(98.9 %id)
AI990918 pooled germ cell tumors .c 880 to 1510 631 to 1       631/824
(76 %)
5 diff
(99.4 %id)
AI206618 pooled germ cell tumors .c 1040 to 1510 470 to 1       470/470
(100 %)
4 diff
(99.2 %id)
AK291485 brain .d 1 to 1313 1 to 1313 T139S     1313/1313
(100 %)
2 diff
(99.9 %id)
DC348838   .d 1 to 558 1 to 558       558/558
(100 %)
0 diff
(100 %id)
DC352272 brain .d 1 to 705 1 to 711   tiling clone,   711/755
(94 %)
11 diff
(98.6 %id)
DC376543 brain .d 1 to 520 1 to 520       520/520
(100 %)
0 diff
(100 %id)
DC377595 brain .d 1 to 555 1 to 555       555/555
(100 %)
0 diff
(100 %id)
DC377994 brain .d 1 to 548 1 to 548       548/548
(100 %)
2 diff
(99.7 %id)
DC386450   .d 1 to 506 1 to 506       506/506
(100 %)
1 diff
(99.9 %id)
DA953888 Spleen .d 2 to 557 2 to 560   capped   559/559
(100 %)
3 diff
(99.5 %id)
BG723335 testis .d 17 to 641 1 to 623       623/623
(100 %)
8 diff
(98.8 %id)
NM_198935.1   .d 22 to 4569 1 to 4548 exact RefSeq, AAA   4548/4548
(100 %)
0 diff
(100 %id)
DA753018   .d 22 to 598 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA711295   .d 23 to 568 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA794754 brain .d 23 to 518 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
DA180214 amygdala .d 26 to 593 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DA780351 brain .d 26 to 599 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA781096 brain .d 26 to 604 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DA212998 brain .d 28 to 506 2 to 481   capped   474/480
(98 %)
3 diff
(99.4 %id)
DR002280 fetal brain .d 28 to 531 1 to 502       502/502
(100 %)
4 diff
(99.3 %id)
DB466840.
matches multiple genes
hippocampus .d 31 to 460 1 to 429     also hits gene dozor 429/433
(99 %)
8 diff
(98.2 %id)
DB482952.
matches multiple genes
hippocampus .d 31 to 539 1 to 509     also hits gene dozor 509/509
(100 %)
2 diff
(99.7 %id)
DB503028.
matches multiple genes
hypothalamus .d 31 to 504 1 to 474     also hits gene dozor 474/474
(100 %)
0 diff
(100 %id)
DA394829 thalamus .d 34 to 608 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA772649 brain .d 35 to 611 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA689395   .d 37 to 557 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
DA881298   .d 37 to 593 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB206474 trachea .d 37 to 632 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DA496622 brain .d 41 to 624 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DR000811 fetal brain .d 41 to 730 9 to 696       688/700
(98 %)
8 diff
(98.9 %id)
DR002404 fetal brain .d 41 to 750 10 to 719       710/719
(98 %)
8 diff
(98.9 %id)
AB014593 brain .d 51 to 4543 1 to 4493 exact tiling clone, available from KIAA,   4493/4493
(100 %)
0 diff
(100 %id)
CN258236 embryonic stem cells, cell lines H1, H7, andH9 .d 61 to 745 1 to 684       684/684
(100 %)
3 diff
(99.6 %id)
DA789671 brain .d 92 to 435 166 to 509   capped   344/508
(67 %)
6 diff
(98.9 %id)
BE394633 endometrium, adenocarcinoma cell line, uterus .d 105 to 786 1 to 684       684/793
(86 %)
12 diff
(98.5 %id)
EC461187 Prostate .d 323 to 413 1 to 91       91/91
(100 %)
0 diff
(100 %id)
TI_1948154168   .d 452 to 1272 944 to 123       822/1442
(57 %)
5 diff
(99.7 %id)
TI_1948154263   .d 471 to 1272 931 to 122       810/1442
(56 %)
31 diff
(97.9 %id)
TI_1948154343   .d 521 to 1272 869 to 122       748/1323
(56 %)
11 diff
(99.2 %id)
CN258237 embryonic stem cells, DMSO-treated H9 cellline .d 581 to 1259 1 to 679       679/679
(100 %)
7 diff
(99.0 %id)
EC541354 Prostate .d 588 to 677 1 to 95       95/95
(100 %)
8 diff
(91.6 %id)
DA781651 brain .d 613 to 1186 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
TI_1948154082   .d 630 to 1272 767 to 123       645/1448
(44 %)
36 diff
(97.6 %id)
CN258234 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 1028 to 1240 1 to 213       213/213
(100 %)
1 diff
(99.6 %id)
DT221010 brain .d 1265 to 1933 669 to 2       668/669
(99 %)
0 diff
(100 %id)
BX506778 Liver .d 1322 to 1851 1 to 532       532/532
(100 %)
7 diff
(98.7 %id)
BE830615 marrow .d 1333 to 1664 336 to 5       332/338
(98 %)
0 diff
(100 %id)
BQ722557 sympathetic trunk .d 1334 to 2068 1 to 754       754/983
(76 %)
26 diff
(97.4 %id)
AW274714 pooled .d 1402 to 1876 487 to 13   AAA   475/475
(100 %)
2 diff
(99.6 %id)
BE825169 colon_normal .d 1502 to 1744 252 to 12       241/260
(92 %)
0 diff
(100 %id)
CN258235 embryonic stem cells, DMSO-treated H9 cellline .d 1745 to 2265 1 to 521       521/521
(100 %)
0 diff
(100 %id)
BM452970 melanotic melanoma, skin .d 1801 to 2515 1 to 716       716/889
(80 %)
13 diff
(98.6 %id)
CD654322 Embryonic Stem cells .d 1802 to 2157 1 to 353       353/383
(92 %)
35 diff
(90.9 %id)
H01062 placenta .d 1807 to 2076 1 to 277   fully sequenced,   277/277
(100 %)
3 diff
(99.0 %id)
BU176753 eye, retinoblastoma .d 1809 to 2611 1 to 815       815/815
(100 %)
17 diff
(98.0 %id)
CB140533 Liver .d 1863 to 2239 9 to 385       377/385
(97 %)
6 diff
(98.5 %id)
T05499   .d 1880 to 2181 307 to 1       307/307
(100 %)
4 diff
(98.7 %id)
BQ025990 placenta .d 1909 to 2343 451 to 17   AAA   435/435
(100 %)
0 diff
(100 %id)
BJ990808 hepatoblastoma .d 1932 to 2425 32 to 525       494/525
(94 %)
0 diff
(100 %id)
BX501113 Liver .d 1953 to 2497 1 to 545       545/545
(100 %)
2 diff
(99.7 %id)
DA157565 amygdala .d 2006 to 2579 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
H01063 placenta .d 2046 to 2333 293 to 1   fully sequenced,   293/293
(100 %)
0 diff
(100 %id)
H22696 whole brain .d 2150 to 2538 1 to 396       396/396
(100 %)
10 diff
(97.5 %id)
CN258239 embryonic stem cells, cell lines H1, H7, andH9 .d 2176 to 2811 13 to 648       636/648
(98 %)
6 diff
(99.1 %id)
DA420382 cervix .d 2199 to 2723 2 to 527   capped   526/526
(100 %)
1 diff
(99.9 %id)
DA158427 amygdala .d 2368 to 2932 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
BG428102 Kidney .d 2457 to 3095 1 to 644       644/644
(100 %)
11 diff
(98.3 %id)
AA353957   .d 2596 to 2951 1 to 357       357/358
(99 %)
2 diff
(99.5 %id)
DA177571 amygdala .d 2647 to 3212 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
AW962225   .d 2720 to 3300 1 to 576       576/576
(100 %)
13 diff
(97.8 %id)
AV685916 hepatocellular carcinoma .d 2870 to 3424 1 to 555       555/576
(96 %)
2 diff
(99.7 %id)
AA331509 Embryo, 8 weeks .d 2885 to 3101 1 to 218       218/218
(100 %)
1 diff
(99.6 %id)
AV682956 hepatocellular carcinoma .d 2885 to 3273 1 to 382       382/388
(98 %)
9 diff
(97.7 %id)
AA188596   .d 2903 to 3383 1 to 480       480/482
(99 %)
10 diff
(98.0 %id)
BG192483   .d 2953 to 3709 1 to 746       746/748
(99 %)
30 diff
(96.0 %id)
CD298895 Blood vessels - aorta, basilar and artery .d 3050 to 3781 1 to 738       738/738
(100 %)
16 diff
(97.9 %id)
CA773713 Pancreas, Purified pancreatic islet .d 3054 to 3693 11 to 650       640/650
(98 %)
6 diff
(99.1 %id)
T67188 liver and spleen .d 3072 to 3460 1 to 396       396/397
(99 %)
10 diff
(97.5 %id)
BX499901 Liver .d 3086 to 3628 1 to 543       543/543
(100 %)
3 diff
(99.5 %id)
CK902494 Pancreas, Purified pancreatic islet .d 3096 to 3666 1 to 571     Submitted on the opposite strand 571/571
(100 %)
3 diff
(99.5 %id)
FN075204 breast carcinoma .d 3271 to 3359 89 to 1     Submitted on the opposite strand 89/89
(100 %)
0 diff
(100 %id)
BF244962 brain, glioblastoma .d 3302 to 3861 1 to 586       586/888
(65 %)
29 diff
(96.8 %id)
AA488223 whole brain .d 3556 to 4059 1 to 503   fully sequenced,   503/503
(100 %)
0 diff
(100 %id)
AA488256.
matches multiple genes
whole brain .d 3556 to 4011 1 to 456     also hits gene METTL10andFAM53B 456/456
(100 %)
2 diff
(99.6 %id)
CR738936   .d 3557 to 4249 1 to 693       693/693
(100 %)
0 diff
(100 %id)
CD102103 Pooled-Skin .d 3557 to 4261 1 to 716       716/768
(93 %)
22 diff
(97.2 %id)
AA328996   .d 3678 to 4063 1 to 389       389/390
(99 %)
4 diff
(99.0 %id)
AW952446   .d 3679 to 4238 1 to 560       560/560
(100 %)
0 diff
(100 %id)
DW438072 Liver .d 3740 to 3970 17 to 247       231/247
(93 %)
6 diff
(97.6 %id)
DW449330 Liver .d 3740 to 3926 17 to 204       188/204
(92 %)
6 diff
(97.1 %id)
DW465574 Liver .d 3740 to 4079 17 to 357       341/357
(95 %)
6 diff
(98.4 %id)
TI_149274523   .d 3792 to 4536 837 to 93   AAA   745/1021
(72 %)
1 diff
(100.0 %id)
BU676187 lung, Primary Lung Epithelial Cells .d 3792 to 4536 763 to 19   AAA   745/751
(99 %)
1 diff
(99.9 %id)
AA371329 Prostate .d 3814 to 4073 1 to 263       263/263
(100 %)
6 diff
(97.8 %id)
H89281 cochlea, ear .d 3847 to 4233 1 to 397       397/399
(99 %)
17 diff
(95.8 %id)
FN060240 breast carcinoma .d 3873 to 3980 1 to 109       109/109
(100 %)
4 diff
(96.4 %id)
FN064199 breast carcinoma .d 3874 to 3980 1 to 107       107/107
(100 %)
0 diff
(100 %id)
CN258238 embryonic stem cells, cell lines H1, H7, andH9 .d 3953 to 4507 1 to 555       555/555
(100 %)
1 diff
(99.9 %id)
AU311811.
matches multiple genes
neuroblastoma .d 3977 to 4536 599 to 41   AAA also hits gene CACNB3 559/559
(100 %)
1 diff
(99.9 %id)
BJ990809 hepatoblastoma .d 3984 to 4523 540 to 1       540/540
(100 %)
0 diff
(100 %id)
AA345510 gall bladder .d 3994 to 4318 1 to 326       326/326
(100 %)
1 diff
(99.7 %id)
AI627781 Kidney .d 4023 to 4544 523 to 1       523/523
(100 %)
1 diff
(99.9 %id)
BF940285 Kidney .d 4023 to 4553 532 to 2   tiling clone,   531/532
(99 %)
0 diff
(100 %id)
BU069011 Pancreas, Purified pancreatic islet .d 4023 to 4543 532 to 12   AAA   521/521
(100 %)
1 diff
(99.9 %id)
AA488169 whole brain .d 4029 to 4548 521 to 1   fully sequenced,   521/521
(100 %)
0 diff
(100 %id)
AW152517 serous papillary carcinoma, high grade, 2pooled tumors, uterus .d 4030 to 4536 507 to 1       507/507
(100 %)
0 diff
(100 %id)
BG150091 carcinoid, lung .d 4045 to 4540 496 to 1       496/496
(100 %)
0 diff
(100 %id)
FN124533 breast carcinoma .d 4050 to 4141 1 to 90       90/95
(94 %)
4 diff
(95.8 %id)
BE221720 Kidney .d 4077 to 4544 472 to 5       468/472
(99 %)
0 diff
(100 %id)
AA488199 whole brain .d 4083 to 4548 466 to 1       466/466
(100 %)
0 diff
(100 %id)
AA810747 germinal center B cell .d 4094 to 4543 460 to 12   AAA   449/449
(100 %)
2 diff
(99.6 %id)
BQ024608 placenta .d 4100 to 4543 463 to 19   AAA   445/445
(100 %)
1 diff
(99.8 %id)
AA084575   .d 4129 to 4543 416 to 1       416/417
(99 %)
1 diff
(99.8 %id)
H23976 whole brain .d 4138 to 4544 419 to 8       412/425
(96 %)
0 diff
(100 %id)
T67187 liver and spleen .d 4138 to 4544 432 to 4       429/439
(97 %)
0 diff
(100 %id)
AI003992   .d 4139 to 4539 396 to 1       396/396
(100 %)
4 diff
(99.0 %id)
AA662729 normal prostate, Prostate .d 4146 to 4544 400 to 2       399/400
(99 %)
0 diff
(100 %id)
T52986 ovary .d 4202 to 4553 1 to 353   fully sequenced,   353/353
(100 %)
10 diff
(97.2 %id)
EC501183 Prostate .d 4216 to 4337 1 to 122       122/122
(100 %)
5 diff
(96.0 %id)
EC447021 Prostate .d 4217 to 4339 1 to 119       119/119
(100 %)
4 diff
(96.7 %id)
C00372   .d 4220 to 4538 1 to 320       320/326
(98 %)
11 diff
(96.7 %id)
AI539078 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .d 4244 to 4537 321 to 28   AAA   294/294
(100 %)
8 diff
(97.3 %id)
BE890131 leiomyosarcoma, uterus .d 4245 to 4536 1 to 291   AAA   291/291
(100 %)
1 diff
(99.7 %id)
AI566665 serous papillary carcinoma, high grade, 2pooled tumors, uterus .d 4247 to 4536 290 to 1       290/290
(100 %)
1 diff
(99.7 %id)
AI824488 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d 4251 to 4540 291 to 1       291/291
(100 %)
7 diff
(97.6 %id)
AW081994 esophagus, squamous cell carcinoma .d 4265 to 4544 281 to 2       280/281
(99 %)
0 diff
(100 %id)
FN112799 breast carcinoma .d 4471 to 4542 1 to 73       73/76
(96 %)
2 diff
(97.4 %id)
T52987 ovary .d 4480 to 4542 63 to 1   fully sequenced,   63/63
(100 %)
0 diff
(100 %id)
DA452845 tongue, tumor tissue .e 1 to 573 2 to 574   tiling clone, capped   573/573
(100 %)
0 diff
(100 %id)
BX640848 small intestine .e 2 to 3620 1 to 3619 S106G tiling clone, available from DKFZ, AAA   3619/3619
(100 %)
7 diff
(99.9 %id)
DA147730 amygdala .e 3 to 568 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
AK308765 amygdala .e 14 to 1034 1 to 1021   tiling clone,   1021/1021
(100 %)
3 diff
(99.8 %id)
DA191315 amygdala .e 15 to 590 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
BF750323 breast_normal .e 214 to 437 33 to 260       226/262
(86 %)
10 diff
(96.2 %id)
CR998072 T-Lymphocytes .f 1 to 805 1 to 806   tiling clone,   806/808
(99 %)
2 diff
(99.8 %id)
AY203931   .f 389 to 1629 1 to 1241 exact tiling clone, AAA   1241/1241
(100 %)
1 diff
(100.0 %id)
BP871682 embryonal kidney .g 1 to 584 1 to 583 exact tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
AV688244 hepatocellular carcinoma .h 1 to 397 1 to 394   tiling clone,   394/395
(99 %)
7 diff
(98.3 %id)
AV686625 hepatocellular carcinoma .h 1 to 454 1 to 451       451/451
(100 %)
9 diff
(98.1 %id)
AV692249 hepatocellular carcinoma .h 1 to 428 1 to 424       424/424
(100 %)
9 diff
(97.9 %id)
AV690955 hepatocellular carcinoma .h 1 to 435 1 to 432       432/432
(100 %)
7 diff
(98.4 %id)
DA012839 adrenal gland .h 82 to 641 2 to 561   tiling clone, capped   560/561
(99 %)
2 diff
(99.7 %id)
CB267677 adipose .h 118 to 650 1 to 532 H74L S98N S102N S115F Q121S ... tiling clone,   532/567
(93 %)
9 diff
(98.5 %id)
CN286425 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i-u 1 to 222 1 to 222   tiling clone,   222/222
(100 %)
0 diff
(100 %id)
DA642394 Liver .i-u 205 to 846 2 to 644   tiling clone, capped   643/643
(100 %)
2 diff
(99.7 %id)
AK125656 synovial membrane tissue from rheumatioidarthritis Gene SS18L1, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
BX483299   Gene SS18L1, variant not shown         This clone was ignored    
BX483300   Gene SS18L1, variant not shown       AAA This clone was ignored    
AV689887 hepatocellular carcinoma Gene SS18L1, variant not shown         Suspected internal deletion, this clone was ignored    
BE887578 leiomyosarcoma, uterus Gene SS18L1, variant not shown         This clone was ignored    
BG389212 embryonal carcinoma, cell line, testis Gene SS18L1, variant not shown         Suspected internal deletion, this clone was ignored    
BU570447 testis Gene SS18L1, variant not shown         This clone was ignored    
CV570474 cornea, eye Gene SS18L1, variant not shown         Suspected internal deletion, this clone was ignored    
DA994523 synovial membrane tissue from rheumatioidarthritis Gene SS18L1, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB335058 synovial membrane tissue from rheumatioidarthritis Gene SS18L1, variant not shown         Suspected internal deletion, this clone was ignored    
DB150551 thymus Gene SS18L1, variant not shown       capped      
DB346094 thymus Gene SS18L1, variant not shown              
DB229019 trachea Gene SS18L1, variant not shown       capped      
DB229054 trachea Gene SS18L1, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI