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Gene SRFTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
255 supporting clones for gene SRF back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AI085561 B-cell, chronic lymphotic leukemia .a 1 to 432 435 to 4   tiling clone,   432/435
(99 %)
0 diff
(100 %id)
AW297472   .a 100 to 444 347 to 3       345/347
(99 %)
0 diff
(100 %id)
NM_003131.2   .a 100 to 4416 1 to 4317 exact RefSeq, AAA   4317/4317
(100 %)
0 diff
(100 %id)
BC052572 Lung, epidermoid carcinoma .a 213 to 4416 1 to 4204 exact tiling clone, available from MGC, AAA   4204/4204
(100 %)
0 diff
(100 %id)
BQ945683 epidermoid carcinoma, cell line, lung .a 214 to 808 1 to 597       597/1037
(57 %)
16 diff
(98.5 %id)
J03161   .a 217 to 4416 1 to 4201 exact     4201/4201
(100 %)
2 diff
(100.0 %id)
CD109828 Human Placenta, placenta .a 339 to 1035 20 to 723       704/852
(82 %)
6 diff
(99.3 %id)
DN995367 breast cancer, Mammary gland (cancer tissue) .a 373 to 933 1 to 561       561/561
(100 %)
6 diff
(99.0 %id)
BC048211 Lymph, lymphoma .a 377 to 2858 1 to 2482 exact available from MGC, AAA   2482/2482
(100 %)
1 diff
(100.0 %id)
BQ056072 lymph, lymphoma, cell line .a 379 to 1088 1 to 711       711/1002
(70 %)
8 diff
(99.3 %id)
AI469747 colon, moderately-differentiated adenocarcinoma .a 445 to 826 1 to 382     Submitted on the opposite strand 382/382
(100 %)
1 diff
(99.8 %id)
BE044291 pooled .a 446 to 917 1 to 472     Submitted on the opposite strand 472/472
(100 %)
0 diff
(100 %id)
BE552093 pooled germ cell tumors .a 447 to 959 1 to 513     Submitted on the opposite strand 513/513
(100 %)
1 diff
(99.9 %id)
AI469731 colon, moderately-differentiated adenocarcinoma .a 462 to 763 1 to 302     Submitted on the opposite strand 302/302
(100 %)
1 diff
(99.7 %id)
AI223331 pooled .a 473 to 1238 1 to 759     Submitted on the opposite strand 759/759
(100 %)
26 diff
(96.6 %id)
AI425115 pooled .a 473 to 905 1 to 433     Submitted on the opposite strand 433/459
(94 %)
6 diff
(98.7 %id)
AW071998 anaplastic oligodendroglioma, brain .a 473 to 1087 1 to 615     Submitted on the opposite strand 615/615
(100 %)
6 diff
(99.1 %id)
AW070449 pooled .a 473 to 935 1 to 463     Submitted on the opposite strand 463/463
(100 %)
4 diff
(99.2 %id)
AW172521 pooled .a 473 to 1015 1 to 539     Submitted on the opposite strand 539/539
(100 %)
11 diff
(98.0 %id)
AW270147 pooled .a 473 to 896 1 to 424     Submitted on the opposite strand 424/424
(100 %)
1 diff
(99.8 %id)
AW511307 pooled .a 473 to 921 1 to 448     Submitted on the opposite strand 448/626
(71 %)
5 diff
(99.3 %id)
AW594518 pooled germ cell tumors .a 473 to 938 1 to 466     Submitted on the opposite strand 466/466
(100 %)
4 diff
(99.2 %id)
BQ786929 Pancreas, Purified pancreatic islet .a 483 to 688 1 to 206     Submitted on the opposite strand 206/206
(100 %)
2 diff
(99.1 %id)
BF057535 fibrotheoma, ovary .a 577 to 748 1 to 172     Submitted on the opposite strand 172/172
(100 %)
0 diff
(100 %id)
CN273298 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 593 to 744 1 to 152       152/152
(100 %)
2 diff
(98.7 %id)
BG005820 placenta_normal .a 863 to 1263 1 to 398       398/399
(99 %)
8 diff
(98.0 %id)
BM008457 Spleen .a 881 to 1716 1 to 836       836/975
(85 %)
23 diff
(97.7 %id)
TI_59383190   .a 882 to 1716 103 to 937       835/974
(85 %)
22 diff
(97.8 %id)
BQ307835 breast .a 932 to 1190 1 to 262       262/262
(100 %)
23 diff
(91.3 %id)
BQ719356 sympathetic trunk .a 991 to 1898 1 to 913       913/919
(99 %)
16 diff
(98.3 %id)
DB126670 thymus .a 1020 to 1545 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
H30760 brain .a 1032 to 1429 1 to 401       401/431
(93 %)
4 diff
(99.1 %id)
BF844679 head_neck .a 1044 to 1443 1 to 398       400/398
(100 %)
5 diff
(98.8 %id)
BF844678 head_neck .a 1047 to 1398 1 to 351       353/351
(100 %)
8 diff
(97.8 %id)
CN273304 embryonic stem cells, DMSO-treated H9 cellline .a 1047 to 1437 394 to 4     Submitted on the opposite strand 391/394
(99 %)
0 diff
(100 %id)
BU195764 eye, retinoblastoma .a 1050 to 1928 1 to 878       878/906
(96 %)
8 diff
(99.2 %id)
H19541 brain .a 1056 to 1264 209 to 1     Submitted on the opposite strand 209/209
(100 %)
3 diff
(98.6 %id)
H18617 brain .a 1071 to 1270 200 to 1     Submitted on the opposite strand 200/200
(100 %)
3 diff
(98.5 %id)
H21236 brain .a 1117 to 1264 148 to 1     Submitted on the opposite strand 148/148
(100 %)
2 diff
(98.7 %id)
BM466280 embryonal carcinoma, cell line, testis .a 1171 to 2010 1 to 843       843/1169
(72 %)
19 diff
(98.4 %id)
BF996172 placenta_normal .a 1197 to 1688 491 to 1       491/491
(100 %)
2 diff
(99.6 %id)
BQ072087 brain, neuroblastoma, cell line .a 1218 to 2179 1 to 961       961/1031
(93 %)
11 diff
(99.0 %id)
CB270761 adipose .a 1316 to 1803 1 to 488       488/488
(100 %)
0 diff
(100 %id)
CR594188 Neuroblastoma Cot 10-normalized .a 1475 to 4397 1 to 2923       2923/2923
(100 %)
0 diff
(100 %id)
AL521878 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 1475 to 2396 1 to 922       922/922
(100 %)
2 diff
(99.8 %id)
CN273301 embryonic stem cells, DMSO-treated H9 cellline .a 1492 to 2193 9 to 710       702/710
(98 %)
8 diff
(98.9 %id)
BM856035 stomach .a 1512 to 1641 1 to 130       130/130
(100 %)
0 diff
(100 %id)
BM469317 embryonal carcinoma, cell line, testis .a 1584 to 2197 1 to 614       614/627
(97 %)
3 diff
(99.6 %id)
BF763903 colon_est .a 1649 to 1900 255 to 5     Submitted on the opposite strand 251/257
(97 %)
4 diff
(98.5 %id)
BF733797 amnion_normal .a 1691 to 2083 1 to 393       393/393
(100 %)
0 diff
(100 %id)
BE817130 breast_normal .a 1875 to 2128 256 to 1       256/261
(98 %)
12 diff
(95.5 %id)
BE817144 breast_normal .a 1875 to 2162 324 to 30       295/329
(89 %)
5 diff
(98.5 %id)
BE818715 breast_normal .a 1884 to 2194 322 to 13       310/322
(96 %)
0 diff
(100 %id)
BE818728 breast_normal .a 1884 to 2192 321 to 11       311/321
(96 %)
0 diff
(100 %id)
BE727665 melanotic melanoma, skin .a 1957 to 2676 1 to 716       716/764
(93 %)
7 diff
(99.1 %id)
R73231 breast .a 2002 to 2212 1 to 211       211/211
(100 %)
5 diff
(97.7 %id)
BM714062 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2069 to 2721 1 to 652       652/652
(100 %)
1 diff
(99.9 %id)
DA297083 hippocampus .a 2173 to 2709 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
CN273299 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2203 to 2854 1 to 652       652/652
(100 %)
2 diff
(99.7 %id)
D58567   .a 2212 to 2598 1 to 383       383/394
(97 %)
5 diff
(98.8 %id)
D58745   .a 2212 to 2496 1 to 288       288/293
(98 %)
4 diff
(98.7 %id)
D58972   .a 2212 to 2531 1 to 320       320/320
(100 %)
6 diff
(98.2 %id)
CD616396   .a 2256 to 2740 497 to 14       484/504
(96 %)
0 diff
(100 %id)
AA033917 uterus .a 2256 to 2461 1 to 207   fully sequenced,   207/207
(100 %)
3 diff
(98.6 %id)
BX368985 Neuroblastoma Cot 10-normalized .a 2283 to 2919 1 to 634       634/641
(98 %)
31 diff
(95.2 %id)
BM542655 leiomyosarcoma, uterus .a 2284 to 2869 658 to 72     Submitted on the opposite strand 587/1264
(46 %)
0 diff
(100 %id)
TI_159705822   .a 2288 to 2863 607 to 33   AAA   575/1004
(57 %)
3 diff
(99.8 %id)
BU156977 hepatocellular carcinoma, cell line, Liver .a 2290 to 2869 610 to 30     Submitted on the opposite strand 581/614
(94 %)
0 diff
(100 %id)
CR974739 T-Lymphocytes .a 2293 to 2762 470 to 1     Submitted on the opposite strand 470/470
(100 %)
0 diff
(100 %id)
AI188786 placenta .a 2294 to 2864 574 to 4       571/584
(97 %)
0 diff
(100 %id)
BQ648260 hepatocellular carcinoma, cell line, Liver .a 2294 to 2869 611 to 30     Submitted on the opposite strand 582/1087
(53 %)
0 diff
(100 %id)
AW471366 adenocarcinoma, Pancreas .a 2299 to 2863 565 to 1       565/565
(100 %)
24 diff
(95.8 %id)
CA424569 cell lines, Chondrosarcoma .a 2307 to 2858 570 to 19   AAA   552/552
(100 %)
0 diff
(100 %id)
CA308102 Alveolar Macrophage, lung .a 2309 to 2867 575 to 19   AAA   557/557
(100 %)
2 diff
(99.7 %id)
AI188933 placenta .a 2312 to 2869 559 to 3       557/578
(96 %)
0 diff
(100 %id)
BQ013534 placenta .a 2321 to 2863 553 to 13   AAA   541/541
(100 %)
2 diff
(99.7 %id)
N31354 melanocyte .a 2322 to 2689 1 to 366       366/366
(100 %)
2 diff
(99.5 %id)
AA366483 Pancreas .a 2323 to 2523 1 to 201       201/201
(100 %)
1 diff
(99.6 %id)
DA148585 amygdala .a 2323 to 2878 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
BP291748 lung .a 2326 to 2906 1 to 581       581/581
(100 %)
15 diff
(97.5 %id)
TI_158431002   .a 2329 to 2863 639 to 99   AAA   541/996
(54 %)
26 diff
(97.4 %id)
BQ787204 Pancreas, Purified pancreatic islet .a 2331 to 2869 574 to 36     Submitted on the opposite strand 539/574
(93 %)
0 diff
(100 %id)
AW237418 Kidney .a 2355 to 2863 508 to 1       508/508
(100 %)
1 diff
(99.9 %id)
BG941780 blood .a 2383 to 2773 1 to 392       392/392
(100 %)
3 diff
(99.3 %id)
BI225226 Burkitt lymphoma, lymph .a 2384 to 2960 1 to 578       578/578
(100 %)
4 diff
(99.4 %id)
AI093269 uterus .a 2400 to 2859 460 to 1       460/460
(100 %)
3 diff
(99.4 %id)
AW237435 Kidney .a 2401 to 2863 462 to 1       462/462
(100 %)
1 diff
(99.8 %id)
BE270000 Burkitt lymphoma, lymph .a 2403 to 2990 1 to 590       590/591
(99 %)
5 diff
(99.2 %id)
BQ652098 hepatocellular carcinoma, cell line, Liver .a 2407 to 2869 492 to 30     Submitted on the opposite strand 463/1061
(43 %)
0 diff
(100 %id)
AI080234 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2425 to 2859 435 to 1       435/435
(100 %)
0 diff
(100 %id)
AA033918 uterus .a 2431 to 2863 436 to 1   fully sequenced,   436/436
(100 %)
7 diff
(98.4 %id)
BF510629   .a 2452 to 2863 429 to 18   AAA   412/412
(100 %)
1 diff
(99.8 %id)
BG176555 lymph, lymphoma, cell line .a 2526 to 3252 1 to 730       730/731
(99 %)
21 diff
(97.2 %id)
CF528447 placenta .a 2539 to 2863 337 to 13   AAA   325/325
(100 %)
0 diff
(100 %id)
CD616394   .a 2590 to 3200 1 to 612       612/612
(100 %)
7 diff
(98.9 %id)
TI_57221479   .a 2594 to 2757 498 to 664       533/1088
(48 %)
22 diff
(98.0 %id)
F18048 pectoral muscle (after mastectomy) .a 2626 to 2864 1 to 239       239/239
(100 %)
1 diff
(99.6 %id)
CD172074 White Matter .a 2673 to 3529 29 to 893       865/906
(95 %)
31 diff
(96.6 %id)
R73158 breast .a 2692 to 2831 140 to 1       140/140
(100 %)
1 diff
(99.3 %id)
H28169 brain .a 2738 to 2862 125 to 1       125/125
(100 %)
2 diff
(98.4 %id)
CF529507 placenta .a 2740 to 2863 137 to 14   AAA   124/124
(100 %)
0 diff
(100 %id)
AA326320 brain, cerebellum .a 2874 to 3121 1 to 249       249/249
(100 %)
2 diff
(99.2 %id)
BX349891 Neuroblastoma Cot 10-normalized .a 2876 to 3577 709 to 3       707/867
(81 %)
0 diff
(100 %id)
CN483214 eye .a 3037 to 3656 1 to 620       620/620
(100 %)
2 diff
(99.7 %id)
TI_57189880   .a 3111 to 3768 49 to 703       655/655
(100 %)
6 diff
(99.1 %id)
BI860056 breast, mammary adenocarcinoma, cell line .a 3112 to 3768 1 to 654       654/654
(100 %)
6 diff
(99.1 %id)
BE616339 adenocarcinoma, Pancreas .a 3119 to 3859 39 to 769       731/769
(95 %)
6 diff
(99.3 %id)
BE615112 adenocarcinoma, Pancreas .a 3138 to 3992 1 to 844       844/857
(98 %)
30 diff
(96.5 %id)
BM836967 Ascites, stomach .a 3170 to 3589 1 to 420       420/420
(100 %)
4 diff
(99.1 %id)
CX165639 human embryonic stem cells differentiated toan early endodermal cell type .a 3194 to 4003 7 to 816       810/816
(99 %)
6 diff
(99.3 %id)
BM312618 Pancreas, Purified pancreatic islet .a 3197 to 3660 1 to 464       464/464
(100 %)
3 diff
(99.4 %id)
CX756229 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 3199 to 3966 1 to 761     Submitted on the opposite strand 761/762
(99 %)
8 diff
(99.0 %id)
BM423603 amelanotic melanoma, cell line, skin .a 3200 to 4113 1 to 921       921/1063
(86 %)
24 diff
(97.8 %id)
CB270697 adipose .a 3201 to 3635 1 to 433       433/433
(100 %)
3 diff
(99.4 %id)
BQ068564 brain, neuroblastoma, cell line .a 3201 to 3948 1 to 754       754/1021
(73 %)
16 diff
(98.5 %id)
BQ065950 lymph, lymphoma, cell line .a 3204 to 4115 1 to 915       915/1039
(88 %)
13 diff
(98.8 %id)
BQ718094 sympathetic trunk .a 3212 to 3894 1 to 698       698/946
(73 %)
19 diff
(98.0 %id)
BI868503 adenocarcinoma, cell line, Liver .a 3231 to 4037 1 to 807       807/810
(99 %)
21 diff
(97.5 %id)
TI_57228165   .a 3231 to 4037 57 to 863       807/810
(99 %)
21 diff
(97.5 %id)
BM694060 eye, RPE and Choroid .a 3245 to 3574 1 to 330       330/330
(100 %)
0 diff
(100 %id)
BM704607 eye, RPE and Choroid .a 3245 to 3578 1 to 334       334/334
(100 %)
0 diff
(100 %id)
BF027053 melanotic melanoma, skin .a 3295 to 4025 32 to 754       723/755
(95 %)
16 diff
(97.9 %id)
W32975 parathyroid gland, parathyroid tumor .a 3310 to 3775 6 to 471       466/471
(98 %)
11 diff
(97.7 %id)
T29617 lung .a 3312 to 3547 1 to 234       234/234
(100 %)
2 diff
(99.2 %id)
EL954133 eyeball .a 3316 to 3716 1 to 401       401/401
(100 %)
8 diff
(98.1 %id)
BM476842 leiomyosarcoma, uterus .a 3318 to 4229 38 to 948       911/1076
(84 %)
10 diff
(99.1 %id)
BU521483 leiomyosarcoma, uterus .a 3318 to 4127 10 to 831       822/926
(88 %)
18 diff
(98.1 %id)
CD616393   .a 3319 to 3891 590 to 18       573/590
(97 %)
0 diff
(100 %id)
BU182089 eye, retinoblastoma .a 3319 to 4116 23 to 822       800/876
(91 %)
11 diff
(98.8 %id)
BM466600 eye, retinoblastoma .a 3320 to 3545 1 to 226       226/226
(100 %)
0 diff
(100 %id)
CD671136 eye, Iris .a 3322 to 3806 1 to 485       485/485
(100 %)
0 diff
(100 %id)
BQ059564 lymph, lymphoma, cell line .a 3322 to 4233 1 to 915       915/1001
(91 %)
25 diff
(97.6 %id)
BM472069 embryonal carcinoma, cell line, testis .a 3324 to 4182 1 to 870       870/1007
(86 %)
20 diff
(98.1 %id)
AA223408 brain, neuroepithelial cells .a 3329 to 3675 1 to 345       345/346
(99 %)
8 diff
(97.7 %id)
CN273303 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3330 to 3556 1 to 227       227/227
(100 %)
1 diff
(99.6 %id)
BM046088 carcinoma, cell line, Prostate .a 3332 to 4071 1 to 742       742/742
(100 %)
16 diff
(97.9 %id)
BG821231 adenocarcinoma cell line, colon .a 3334 to 3980 1 to 653       653/820
(79 %)
23 diff
(97.2 %id)
BG821504 adenocarcinoma cell line, colon .a 3334 to 4146 1 to 813       813/814
(99 %)
8 diff
(99.1 %id)
CN273300 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3336 to 3638 1 to 303       303/303
(100 %)
1 diff
(99.7 %id)
BI964212 Islets of Langerhans, Pancreas .a 3337 to 3836 1 to 500       500/500
(100 %)
0 diff
(100 %id)
BG341209 B-cells, primary B-cells from tonsils (cell line) .a 3344 to 4148 1 to 787       787/953
(82 %)
36 diff
(96.3 %id)
BQ071914 brain, neuroblastoma, cell line .a 3355 to 4242 1 to 898       898/1090
(82 %)
22 diff
(98.0 %id)
BE393678 endometrium, adenocarcinoma cell line, uterus .a 3369 to 4036 1 to 667       667/705
(94 %)
21 diff
(97.1 %id)
BM091175 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .a 3381 to 3928 1 to 548       548/548
(100 %)
2 diff
(99.7 %id)
AW878145 ovary .a 3401 to 3804 412 to 8       405/412
(98 %)
0 diff
(100 %id)
AL562034 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .a 3421 to 4359 970 to 39       932/980
(95 %)
0 diff
(100 %id)
BG822774 adenocarcinoma cell line, colon .a 3423 to 4146 1 to 724       724/724
(100 %)
5 diff
(99.4 %id)
EL950082 eyeball .a 3424 to 3734 20 to 332       313/332
(94 %)
6 diff
(98.2 %id)
AI694051 carcinoid, lung .a 3432 to 4160 1 to 728     Submitted on the opposite strand 728/728
(100 %)
10 diff
(98.7 %id)
BF433817 carcinoid, lung .a 3443 to 3982 1 to 539     Submitted on the opposite strand 539/539
(100 %)
5 diff
(99.1 %id)
TI_154116813   .a 3560 to 4414 938 to 93   AAA   846/976
(86 %)
16 diff
(98.4 %id)
TI_149310756   .a 3596 to 4416 912 to 97   AAA   816/937
(87 %)
12 diff
(98.8 %id)
AA927032 pooled germ cell tumors .a 3612 to 4417 813 to 9       805/819
(98 %)
0 diff
(100 %id)
BG744841 blood, natural killer cells, cell line .a 3613 to 4342 730 to 2       729/730
(99 %)
0 diff
(100 %id)
CN273305 embryonic stem cells, DMSO-treated H9 cellline .a 3644 to 4239 1 to 596       596/596
(100 %)
1 diff
(99.9 %id)
AI818134 anaplastic oligodendroglioma, brain .a 3647 to 4416 783 to 15   AAA   769/769
(100 %)
25 diff
(96.8 %id)
BM685954 eye, Retina Foveal and Macular .a 3647 to 4154 1 to 508   fully sequenced,   508/508
(100 %)
3 diff
(99.5 %id)
TI_149274342   .a 3655 to 4414 846 to 97   AAA   750/848
(88 %)
11 diff
(98.8 %id)
CA310095 Alveolar Macrophage, lung .a 3688 to 4414 742 to 17   AAA   726/726
(100 %)
3 diff
(99.6 %id)
TI_149289929   .a 3715 to 4418 788 to 86   AAA   703/704
(99 %)
6 diff
(99.2 %id)
BF155287 breast .a 3716 to 4151 1 to 436       436/436
(100 %)
2 diff
(99.6 %id)
BE616958 adenocarcinoma, colon .a 3731 to 4416 1 to 683   AAA   683/683
(100 %)
4 diff
(99.5 %id)
BF987134 placenta_normal .a 3735 to 4359 627 to 4       624/627
(99 %)
0 diff
(100 %id)
TI_153956603   .a 3735 to 4415 79 to 761       683/1007
(67 %)
53 diff
(94.8 %id)
BM973080 lung .a 3738 to 4418 698 to 17   AAA   682/683
(99 %)
3 diff
(99.6 %id)
AI192369 placenta .a 3749 to 4411 667 to 3       665/821
(80 %)
0 diff
(100 %id)
R72736 breast .a 3769 to 3872 1 to 104       104/104
(100 %)
1 diff
(99.1 %id)
AA039915 uterus .a 3772 to 4274 1 to 513       513/513
(100 %)
9 diff
(98.3 %id)
CA450413 Human Lung Epithelial cells, lung .a 3772 to 4414 659 to 17   AAA   643/643
(100 %)
0 diff
(100 %id)
AA635140 lung, lung carcinoma .a 3780 to 4413 635 to 1       635/635
(100 %)
4 diff
(99.4 %id)
CA442495 Fibrosarcoma .a 3784 to 4418 650 to 17   tiling clone, AAA   634/634
(100 %)
1 diff
(99.9 %id)
BM698716 eye, fetal eyes .a 3786 to 4319 1 to 534       534/534
(100 %)
0 diff
(100 %id)
T64614 lung .a 3787 to 4143 1 to 374   fully sequenced,   374/374
(100 %)
6 diff
(98.4 %id)
AI937298 anaplastic oligodendroglioma, brain .a 3790 to 4417 630 to 4       627/630
(99 %)
0 diff
(100 %id)
BU730682 eye, RPE and Choroid .a 3812 to 4416 623 to 19   AAA   605/605
(100 %)
0 diff
(100 %id)
R55070 breast .a 3813 to 4212 1 to 402   fully sequenced,   402/402
(100 %)
2 diff
(99.6 %id)
AA134601 lung, lung carcinoma .a 3818 to 4415 1 to 597       597/605
(98 %)
2 diff
(99.7 %id)
AI936653 anaplastic oligodendroglioma, brain .a 3820 to 4414 611 to 17   AAA   595/595
(100 %)
5 diff
(99.2 %id)
AI926472 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 3831 to 4415 585 to 2       584/585
(99 %)
0 diff
(100 %id)
CA449578 Chondrosarcoma, Left Pelvis .a 3836 to 4414 595 to 17   AAA   579/579
(100 %)
1 diff
(99.9 %id)
AW138806   .a 3854 to 4416 578 to 16   AAA   563/563
(100 %)
3 diff
(99.5 %id)
BI850532 duodenal adenocarcinoma, cell line, small intestine .a 3859 to 4408 1 to 551       551/556
(99 %)
2 diff
(99.7 %id)
BF982230 duodenal adenocarcinoma, cell line, small intestine .a 3860 to 4412 1 to 553   AAA   553/553
(100 %)
2 diff
(99.7 %id)
BU845088 ovary, teratocarcinoma, cell line .a 3872 to 4416 1 to 545   AAA   545/545
(100 %)
0 diff
(100 %id)
AA770000   .a 3896 to 4409 528 to 15   AAA   514/514
(100 %)
0 diff
(100 %id)
BM091479 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .a 3905 to 4415 511 to 1       511/511
(100 %)
0 diff
(100 %id)
AA649994 normal prostate, Prostate .a 3907 to 4414 518 to 11   AAA   508/508
(100 %)
9 diff
(98.3 %id)
AA994950 breast .a 3919 to 4416 497 to 1       497/497
(100 %)
4 diff
(99.2 %id)
W17073 lung .a 3927 to 4234 1 to 308   fully sequenced,   308/308
(100 %)
1 diff
(99.7 %id)
N24953.
matches multiple genes
melanocyte .a 3951 to 4415 471 to 4     also hits gene GPX4 468/471
(99 %)
0 diff
(100 %id)
AW608519 leiomios .a 3960 to 4334 379 to 3       377/379
(99 %)
0 diff
(100 %id)
AW608526 leiomios .a 3960 to 4305 348 to 1       348/348
(100 %)
8 diff
(97.8 %id)
AA910501 leiomyosarcoma, soft tissue .a 3968 to 4417 451 to 2       450/451
(99 %)
0 diff
(100 %id)
AA603716 germ cell tumor .a 3977 to 4413 439 to 4       436/439
(99 %)
0 diff
(100 %id)
W32378 parathyroid gland, parathyroid tumor .a 3985 to 4415 440 to 7       434/440
(98 %)
0 diff
(100 %id)
AI188766 placenta .a 3995 to 4414 432 to 12   AAA   421/421
(100 %)
2 diff
(99.6 %id)
BF739781 brain, oligodendroglioma .a 3995 to 4417 424 to 1       424/424
(100 %)
1 diff
(99.8 %id)
BG056523 brain, glioblastoma with probably TP53 mutation andwithout EGFR amplification .a 3998 to 4418 422 to 2       421/422
(99 %)
0 diff
(100 %id)
AA223196 brain, neuroepithelial cells .a 3999 to 4417 426 to 6       421/430
(97 %)
0 diff
(100 %id)
TI_149286643   .a 3999 to 4416 498 to 81   AAA   418/422
(99 %)
0 diff
(100 %id)
BU628793 Bone, Enchondroma cell line .a 3999 to 4412 434 to 19   AAA   416/416
(100 %)
9 diff
(97.9 %id)
BG232058 blood, lymphocyte .a 4000 to 4413 414 to 1       414/414
(100 %)
0 diff
(100 %id)
BG231953 blood, lymphocyte .a 4000 to 4396 397 to 1       397/397
(100 %)
0 diff
(100 %id)
BU616691 Bone, Subchondral Bone .a 4001 to 4412 430 to 19   AAA   412/412
(100 %)
0 diff
(100 %id)
AA962525 carcinoid, lung .a 4002 to 4416 416 to 1       416/416
(100 %)
6 diff
(98.6 %id)
BM992115 Bone, Subchondral Bone .a 4002 to 4416 433 to 19   AAA   415/415
(100 %)
0 diff
(100 %id)
BQ001805 Fibrosarcoma .a 4002 to 4412 429 to 19   AAA   411/411
(100 %)
0 diff
(100 %id)
CA427771 Bone, Subchondral Bone .a 4002 to 4416 433 to 19   AAA   415/415
(100 %)
0 diff
(100 %id)
CA305894 Alveolar Macrophage, lung .a 4003 to 4414 429 to 17   AAA   413/414
(99 %)
1 diff
(99.8 %id)
BM996340 lung, Metastatic Chondrosarcoma .a 4005 to 4416 429 to 17   AAA   413/413
(100 %)
1 diff
(99.8 %id)
BM968502 lung, Primary Lung Epithelial Cells .a 4005 to 4414 429 to 19   AAA   411/411
(100 %)
2 diff
(99.6 %id)
BU689024 lung .a 4005 to 4416 428 to 17   AAA   412/412
(100 %)
0 diff
(100 %id)
CA424851 cell lines, Chondrosarcoma .a 4005 to 4414 426 to 17   AAA   410/410
(100 %)
2 diff
(99.6 %id)
BM353197 Pancreas, Purified pancreatic islet .a 4006 to 4417 413 to 2       412/413
(99 %)
0 diff
(100 %id)
BF058663 fibrotheoma, ovary .a 4006 to 4416 411 to 1       411/411
(100 %)
2 diff
(99.6 %id)
BG057399 blood, lymphocyte .a 4006 to 4414 410 to 1       410/410
(100 %)
1 diff
(99.8 %id)
BU616078 Bone, Subchondral Bone .a 4006 to 4416 429 to 19   AAA   411/411
(100 %)
0 diff
(100 %id)
BM994090 lung, Metastatic Chondrosarcoma .a 4007 to 4416 426 to 17   AAA   410/410
(100 %)
0 diff
(100 %id)
BM972180 lung .a 4007 to 4416 426 to 17   AAA   410/410
(100 %)
0 diff
(100 %id)
CA440206 lung, Metastatic Chondrosarcoma .a 4007 to 4412 424 to 19   AAA   406/406
(100 %)
0 diff
(100 %id)
BQ026411 placenta .a 4010 to 4412 420 to 18   AAA   403/405
(99 %)
0 diff
(100 %id)
AW137527   .a 4011 to 4416 421 to 16   AAA   406/406
(100 %)
0 diff
(100 %id)
BF445909 breast, invasive ductal carcinoma, 3 pooled samples .a 4012 to 4413 407 to 6       402/407
(98 %)
0 diff
(100 %id)
TI_151697549   .a 4012 to 4415 524 to 121       404/900
(44 %)
0 diff
(100 %id)
N21398 melanocyte .a 4014 to 4402 397 to 9       389/397
(97 %)
0 diff
(100 %id)
CA444899 lung, Metastatic Chondrosarcoma .a 4015 to 4416 420 to 19   AAA   402/402
(100 %)
3 diff
(99.3 %id)
AI880164 astrocytoma, brain .a 4016 to 4354 338 to 1       338/338
(100 %)
4 diff
(98.9 %id)
BU626374 Bone, Subchondral Bone .a 4022 to 4416 413 to 19   AAA   395/395
(100 %)
0 diff
(100 %id)
BU631984 cell lines, Chondrosarcoma .a 4024 to 4414 408 to 17   AAA   392/392
(100 %)
2 diff
(99.5 %id)
BX098614 whole brain .a 4029 to 4416 402 to 15   AAA   388/393
(98 %)
0 diff
(100 %id)
AA962564 Kidney .a 4033 to 4416 384 to 1       384/384
(100 %)
0 diff
(100 %id)
AW002159 thymus, pooled .a 4039 to 4412 372 to 1       372/372
(100 %)
7 diff
(98.2 %id)
CA436063 lung, Metastatic Chondrosarcoma .a 4044 to 4418 391 to 17   AAA   375/375
(100 %)
1 diff
(99.8 %id)
BM686986 eye, optic nerve .a 4050 to 4415 9 to 374       366/374
(97 %)
10 diff
(97.4 %id)
BM690099 eye, Retina Foveal and Macular .a 4051 to 4415 1 to 365       365/405
(90 %)
1 diff
(99.8 %id)
BQ631552 Pancreas, Purified pancreatic islet .a 4074 to 4416 1 to 343   AAA   343/343
(100 %)
5 diff
(98.6 %id)
AW136101   .a 4097 to 4416 335 to 16   AAA   320/323
(99 %)
4 diff
(98.8 %id)
AA456604 ovarian tumor, ovary .a 4101 to 4373 273 to 1       273/273
(100 %)
3 diff
(99.0 %id)
T64473 lung .a 4113 to 4384 275 to 1   fully sequenced,   275/275
(100 %)
0 diff
(100 %id)
BM663517 eye, Retina Foveal and Macular .a 4124 to 4414 308 to 18   fully sequenced, AAA   291/291
(100 %)
1 diff
(99.7 %id)
BE075766 breast .a 4134 to 4269 137 to 1     Submitted on the opposite strand 137/137
(100 %)
3 diff
(97.9 %id)
AA487823 lung .a 4139 to 4405 1 to 268   fully sequenced,   268/268
(100 %)
2 diff
(99.3 %id)
AA025327 heart .a 4149 to 4409 1 to 263       263/268
(98 %)
4 diff
(98.6 %id)
AI339488 pooled germ cell tumors .a 4159 to 4413 255 to 1       255/255
(100 %)
2 diff
(99.3 %id)
BM999075 lung, Lung Focal Fibrosis .a 4178 to 4414 12 to 248   AAA Submitted on the opposite strand 237/248
(95 %)
6 diff
(97.6 %id)
R55041 breast .a 4182 to 4414 244 to 1   fully sequenced,   244/244
(100 %)
1 diff
(99.6 %id)
BE856155 Prostate .a 4182 to 4416 235 to 1       235/235
(100 %)
0 diff
(100 %id)
BF850416 lung_normal .a 4188 to 4290 118 to 16     Submitted on the opposite strand 103/118
(87 %)
0 diff
(100 %id)
N89658 lung .a 4204 to 4416 213 to 1   fully sequenced,   213/213
(100 %)
0 diff
(100 %id)
BM970621 lung .a 4235 to 4412 196 to 19   AAA   178/178
(100 %)
0 diff
(100 %id)
CA335212 posterior tongue (pooled) .a 4271 to 4416 1 to 146   AAA   146/146
(100 %)
0 diff
(100 %id)
AA487973 lung .a 4277 to 4384 109 to 1   fully sequenced,   109/109
(100 %)
1 diff
(99.1 %id)
EC498850 Prostate .a 4314 to 4415 101 to 3       99/101
(98 %)
0 diff
(100 %id)
GD147927   .a 4335 to 4413 1 to 79       79/90
(87 %)
4 diff
(95.6 %id)
GD147977   .a 4335 to 4415 1 to 81       81/95
(85 %)
4 diff
(95.8 %id)
CA335223 posterior tongue (pooled) .a 4340 to 4395 1 to 56       56/56
(100 %)
0 diff
(100 %id)
AA195329 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1 to 393 392 to 1   tiling clone,   392/396
(98 %)
2 diff
(99.5 %id)
AK300467 placenta .b 8 to 1319 1 to 1312   tiling clone,   1312/1312
(100 %)
1 diff
(100.0 %id)
DC382710 placenta .b 8 to 560 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
BG927779 cartilage .c 1 to 549 630 to 82   tiling clone,   549/562
(97 %)
0 diff
(100 %id)
DC357350 heart .c 317 to 883 1 to 567 A146G V147S A148G Q149P tiling clone,   567/567
(100 %)
1 diff
(99.9 %id)
BF881885 lung_tumor .d-u 1 to 347 1 to 347 exact tiling clone,   347/347
(100 %)
0 diff
(100 %id)
AB209128 brain Gene SRF, variant not shown         This clone was ignored    
CR595609 HeLa cells Cot 25-normalized Gene SRF, variant not shown         Suspected internal deletion, this clone was ignored    
N24952 melanocyte Gene SRF, variant not shown         Suspected internal deletion, this clone was ignored    
N33830 melanocyte Gene SRF, variant not shown         Suspected internal deletion, this clone was ignored    
AI003779 Kidney Gene SRF, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI