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Gene SPTA1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
74 supporting clones for gene SPTA1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_003126.2   .a 1 to 8017 1 to 8017 exact RefSeq,   8017/8017
(100 %)
0 diff
(100 %id)
M61877   .a 19 to 8017 1 to 8001 S1163A W1410R C1568R A1570C C1571D ... tiling clone,   8001/8001
(100 %)
16 diff
(99.9 %id)
BP284353 bone marrow .a 126 to 704 1 to 583       583/583
(100 %)
4 diff
(99.4 %id)
BP282873 bone marrow .a 128 to 707 1 to 583       583/583
(100 %)
7 diff
(98.8 %id)
DN999019 bone marrow .a 175 to 922 8 to 755   tiling clone,   748/755
(99 %)
8 diff
(99.0 %id)
BX495295 Liver .a 2083 to 2709 1 to 627       627/627
(100 %)
3 diff
(99.6 %id)
W87721 liver and spleen .a 2150 to 2377 1 to 228   fully sequenced,   228/228
(100 %)
5 diff
(97.9 %id)
AA699880 liver and spleen .a 2236 to 2743 530 to 19       512/536
(95 %)
10 diff
(98.2 %id)
AI247896 liver and spleen .a 2238 to 2743 529 to 23       507/529
(95 %)
11 diff
(98.0 %id)
T97531 liver and spleen .a 2305 to 2339 1 to 35   fully sequenced,   35/35
(100 %)
0 diff
(100 %id)
T97532 liver and spleen .a 2309 to 2743 456 to 1   fully sequenced,   456/456
(100 %)
26 diff
(94.3 %id)
AI052331 liver and spleen .a 2335 to 2743 427 to 19       409/427
(95 %)
3 diff
(99.3 %id)
AA680079 liver and spleen .a 2347 to 2743 415 to 19       397/415
(95 %)
3 diff
(99.3 %id)
W87722 liver and spleen .a 2375 to 2741 371 to 1   fully sequenced,   371/371
(100 %)
13 diff
(96.5 %id)
BX502650 Liver .a 2870 to 3263 1 to 394       394/394
(100 %)
3 diff
(99.3 %id)
BX502667 Liver .a 3076 to 3608 1 to 534       534/534
(100 %)
3 diff
(99.5 %id)
BX500889 Liver .a 3410 to 4003 1 to 594       594/594
(100 %)
2 diff
(99.7 %id)
CD616352   .a 3914 to 4635 7 to 729   tiling clone,   723/729
(99 %)
15 diff
(98.0 %id)
R07150 liver and spleen .a 4507 to 4805 1 to 308       290/355
(81 %)
15 diff
(95.8 %id)
BP281784 bone marrow .a 4536 to 5119 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
M11049   .a 4549 to 5263 1 to 712   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 712/713
(99 %)
4 diff
(99.5 %id)
CD616351   .a 4650 to 5257 610 to 3   tiling clone,   608/610
(99 %)
0 diff
(100 %id)
R07151 liver and spleen .a 4890 to 5242 358 to 1       358/361
(99 %)
7 diff
(98.1 %id)
BX496544 Liver .a 4922 to 5425 1 to 505       505/509
(99 %)
3 diff
(99.5 %id)
AI133071 Liver .a 4952 to 5266 1 to 315       315/315
(100 %)
0 diff
(100 %id)
BX494376 Liver .a 5607 to 5755 1 to 150       150/154
(97 %)
3 diff
(98.1 %id)
BX500920 Liver .a 5654 to 6312 1 to 659   tiling clone,   659/659
(100 %)
1 diff
(99.9 %id)
H64067 liver and spleen .a 5715 to 6032 1 to 319       319/326
(97 %)
7 diff
(97.9 %id)
AA699804 liver and spleen .a 5717 to 6197 482 to 2       481/482
(99 %)
0 diff
(100 %id)
T28020 adrenal gland, Bone .a 5845 to 6171 1 to 327       327/327
(100 %)
1 diff
(99.7 %id)
AW950278   .a 5846 to 6430 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
R84621 liver and spleen .a 6963 to 7119 1 to 157       157/157
(100 %)
0 diff
(100 %id)
BU665064 blood .a 7024 to 7555 1 to 532   tiling clone,   532/532
(100 %)
0 diff
(100 %id)
AA001290 liver and spleen .a 7098 to 7462 1 to 376   fully sequenced,   376/376
(100 %)
9 diff
(97.7 %id)
H90182 liver and spleen .a 7129 to 7550 5 to 432       428/432
(99 %)
14 diff
(96.8 %id)
AF060556   .a 7334 to 7493 1 to 160       160/160
(100 %)
0 diff
(100 %id)
AA001897 liver and spleen .a 7432 to 7804 375 to 1   fully sequenced,   375/375
(100 %)
7 diff
(98.2 %id)
BX507470 Liver .a 7457 to 7999 541 to 1   tiling clone,   541/541
(100 %)
1 diff
(99.9 %id)
BG059217 nasopharynx, normal epithelium .a 7462 to 7670 213 to 1     Submitted on the opposite strand 213/219
(97 %)
3 diff
(98.7 %id)
AA703344 liver and spleen .a 7557 to 8012 458 to 1       458/486
(94 %)
4 diff
(99.2 %id)
AA704876 liver and spleen .a 7564 to 7945 382 to 1       382/382
(100 %)
0 diff
(100 %id)
H90842 liver and spleen .a 7750 to 8015 266 to 1       266/266
(100 %)
2 diff
(99.3 %id)
R85375 liver and spleen .a 7833 to 8235 414 to 6   tiling clone,   409/414
(98 %)
0 diff
(100 %id)
BX500921 Liver .b 1 to 712 1 to 711 V223G tiling clone,   711/711
(100 %)
3 diff
(99.6 %id)
BX112770 liver and spleen .b 146 to 930 1 to 785   tiling clone,   785/785
(100 %)
4 diff
(99.5 %id)
T96756 liver and spleen .b 148 to 386 1 to 243       243/295
(82 %)
12 diff
(96.0 %id)
R01506 liver and spleen .b 571 to 794 1 to 226       226/231
(97 %)
8 diff
(96.6 %id)
T96643 liver and spleen .b 697 to 1033 365 to 19   tiling clone, AAA   347/377
(92 %)
18 diff
(95.3 %id)
AI248420 liver and spleen .b 936 to 1353 420 to 3   tiling clone,   418/420
(99 %)
0 diff
(100 %id)
AA704516 liver and spleen .b 981 to 1348 368 to 1       368/368
(100 %)
1 diff
(99.8 %id)
R00853 liver and spleen .b 1162 to 1349 199 to 9   tiling clone,   191/204
(93 %)
0 diff
(100 %id)
BX507019 Liver .c 1 to 600 1 to 601 I75T A151V F152S I161T E184R ... tiling clone,   601/601
(100 %)
7 diff
(98.9 %id)
W78849 liver and spleen .d 1 to 392 1 to 392   tiling clone, fully sequenced,   392/392
(100 %)
4 diff
(99.0 %id)
AI248703 liver and spleen .d 151 to 718 563 to 1   tiling clone,   563/568
(99 %)
4 diff
(99.3 %id)
AA703334 liver and spleen .d 241 to 709 462 to 1       462/462
(100 %)
10 diff
(97.9 %id)
AI057065 liver and spleen .d 267 to 714 448 to 1       448/448
(100 %)
0 diff
(100 %id)
W84703 liver and spleen .d 362 to 714 355 to 1   fully sequenced,   355/355
(100 %)
0 diff
(100 %id)
N57825 liver and spleen .e 1 to 380 1 to 385   tiling clone, Submitted on the opposite strand 385/390
(98 %)
12 diff
(97.0 %id)
H56946 liver and spleen .e 25 to 301 1 to 283     Submitted on the opposite strand 283/283
(100 %)
6 diff
(97.9 %id)
BX097720 liver and spleen .e 53 to 818 770 to 4 exact tiling clone, Submitted on the opposite strand 767/770
(99 %)
2 diff
(99.8 %id)
BI462352 testis .f 1 to 776 1 to 777 L11C L12S E14K T15Q G16E ... tiling clone,   777/777
(100 %)
13 diff
(98.4 %id)
T91853 liver and spleen .f 595 to 934 345 to 1   tiling clone,   345/468
(73 %)
8 diff
(98.3 %id)
CR737378 liver and spleen .g 1 to 631 1 to 632 N48I E50X tiling clone,   632/632
(100 %)
5 diff
(99.3 %id)
DB448879 testis .h 1 to 431 1 to 431 exact tiling clone,   431/431
(100 %)
0 diff
(100 %id)
AA700289 liver and spleen .i 1 to 260 260 to 1   tiling clone,   260/260
(100 %)
1 diff
(99.7 %id)
H47798 liver and spleen .i 44 to 452 1 to 420       420/424
(99 %)
15 diff
(96.5 %id)
H79670 liver and spleen .i 203 to 624 1 to 436   tiling clone,   436/436
(100 %)
15 diff
(96.6 %id)
H48135 liver and spleen .i 737 to 1006 271 to 1   tiling clone,   271/272
(99 %)
5 diff
(98.2 %id)
H79671 liver and spleen .i 853 to 1097 245 to 1   tiling clone,   245/245
(100 %)
1 diff
(99.6 %id)
BX502690 Liver .j-u 1 to 521 1 to 521   tiling clone,   521/521
(100 %)
4 diff
(99.3 %id)
BX643535   .j-u 148 to 764 1 to 617 exact tiling clone,   617/617
(100 %)
1 diff
(99.9 %id)
BX500936 Liver .j-u 200 to 894 1 to 695 exact tiling clone,   695/695
(100 %)
1 diff
(99.9 %id)
H83034 liver and spleen .k-u 1 to 363 1 to 368   tiling clone,   368/375
(98 %)
7 diff
(98.2 %id)
H52379 liver and spleen .k-u 37 to 438 1 to 408 L18F A39G I40N Y41I G42W ... tiling clone, Submitted on the opposite strand 408/414
(98 %)
13 diff
(96.9 %id)
H82813 liver and spleen .k-u 615 to 885 271 to 1   tiling clone,   271/271
(100 %)
2 diff
(99.3 %id)
BX643566   .l 1 to 643 1 to 645 exact tiling clone,   645/645
(100 %)
1 diff
(99.9 %id)
DA536951 heart .l 38 to 587 2 to 552   capped   551/551
(100 %)
3 diff
(99.5 %id)
CB266355 adipose .l 321 to 634 1 to 314       314/314
(100 %)
4 diff
(98.8 %id)
BX470303 Liver .m-u 1 to 517 1 to 517 exact tiling clone,   517/517
(100 %)
3 diff
(99.5 %id)
BG944327 blood Gene SPTA1, variant not shown       AAA      
AL601620   Gene SPTA1, variant not shown              
AL691716   Gene SPTA1, variant not shown              
AL691717   Gene SPTA1, variant not shown              
AL601678   Gene SPTA1, variant not shown              
BX495076 Liver Gene SPTA1, variant not shown         This clone was ignored    
BX502741 Liver Gene SPTA1, variant not shown         Suspected internal deletion, this clone was ignored    
H52378 liver and spleen Gene SPTA1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k-u, .l, .m-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI