To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene C5orf46andSPINK1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
117 supporting clones for gene C5orf46andSPINK1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_206966.2   .a 1 to 540 2 to 541 exact RefSeq, AAA   541/541
(100 %)
0 diff
(100 %id)
BX115935 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 34 to 529 1 to 496 S4L     496/496
(100 %)
1 diff
(99.8 %id)
AA436232 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 34 to 282 1 to 249   tiling clone, fully sequenced,   249/249
(100 %)
1 diff
(99.6 %id)
AY358656   .a 36 to 540 1 to 505 S4L tiling clone, AAA   505/505
(100 %)
1 diff
(99.9 %id)
AA436233 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 221 to 540 345 to 26   fully sequenced, AAA   320/320
(100 %)
0 diff
(100 %id)
AK289403   .b 1 to 518 2 to 519 F18I tiling clone,   519/519
(100 %)
2 diff
(99.7 %id)
DA026376   .b 1 to 561 2 to 562 F18I tiling clone, to resequence, capped   561/561
(100 %)
2 diff
(99.7 %id)
CV028796 mixed .b 37 to 258 1 to 222   tiling clone,   222/388
(57 %)
4 diff
(99.0 %id)
DB295693   .b 1251 to 1799 549 to 1   tiling clone, to resequence,   549/549
(100 %)
2 diff
(99.7 %id)
CB159576 Liver .c 1 to 530 1 to 530 exact tiling clone,   530/530
(100 %)
0 diff
(100 %id)
BM855485 stomach .c 230 to 463 1 to 234       234/234
(100 %)
2 diff
(99.2 %id)
BM855319 stomach .c 232 to 344 1 to 114       114/114
(100 %)
2 diff
(98.3 %id)
AW975654   .d 1 to 596 109 to 703   tiling clone,   595/731
(81 %)
5 diff
(99.4 %id)
AA652500   .d 10 to 759 11 to 748       738/748
(98 %)
6 diff
(99.2 %id)
AA740207 Ewing's sarcoma .d 10 to 420 1 to 411       411/411
(100 %)
1 diff
(99.8 %id)
AI990990 colon, colonic mucosa from 3 patients with Crohn'sdisease .d 581 to 1018 444 to 7 exact tiling clone,   438/444
(98 %)
0 diff
(100 %id)
NM_003122.3   .d 581 to 1021 1 to 441 exact RefSeq, AAA   441/441
(100 %)
0 diff
(100 %id)
AA918966 2 pooled tumors (clear cell type), Kidney .d 590 to 1019 436 to 7 exact     430/436
(98 %)
0 diff
(100 %id)
AA612829 colon, colon tumor RER+ .d 601 to 1018 417 to 1 exact     417/417
(100 %)
2 diff
(99.6 %id)
AA918970 2 pooled tumors (clear cell type), Kidney .d 601 to 1019 426 to 7 exact     420/426
(98 %)
0 diff
(100 %id)
BU581387 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .d 611 to 1018 408 to 1 exact     408/413
(98 %)
5 diff
(98.8 %id)
BX108904 Pancreas .d 616 to 1018 1 to 403 exact AAA   403/403
(100 %)
4 diff
(99.1 %id)
AW582941 Islets of Langerhans, Pancreas .d 623 to 1016 1 to 395 S18W N20E T21H G22W A23S ...     395/395
(100 %)
5 diff
(98.8 %id)
CK905024 Islets of Langerhans, Pancreas .d 623 to 1019 1 to 397 exact AAA   397/397
(100 %)
0 diff
(100 %id)
BM830452 stomach .d 627 to 1018 1 to 392 exact     392/394
(99 %)
1 diff
(99.8 %id)
BU581519 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .d 630 to 1018 1 to 389 exact AAA   389/389
(100 %)
0 diff
(100 %id)
GW493223 diffuse (Lauren) gastric adenocarcinoma, stomach .d 633 to 1019 1 to 387 exact AAA   387/387
(100 %)
6 diff
(98.5 %id)
GW493224 diffuse (Lauren) gastric adenocarcinoma, stomach .d 633 to 1019 9 to 395 T40I AAA   387/395
(97 %)
7 diff
(98.3 %id)
AW584007 Islets of Langerhans, Pancreas .d 634 to 1019 388 to 3 S76Y     386/388
(99 %)
0 diff
(100 %id)
AW973307   .d 641 to 1017 377 to 1 exact   Submitted on the opposite strand 377/485
(77 %)
1 diff
(99.8 %id)
BM855825 stomach .d 641 to 1018 1 to 380 exact     380/380
(100 %)
3 diff
(99.3 %id)
BU581710 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .d 643 to 1019 1 to 377 exact AAA   377/377
(100 %)
0 diff
(100 %id)
AA983320 2 pooled tumors (clear cell type), Kidney .d 643 to 1021 383 to 6 exact tiling clone,   378/383
(98 %)
0 diff
(100 %id)
AI660251 colon, colonic mucosa from 3 patients with Crohn'sdisease .d 643 to 1012 370 to 1 L9I Y33C T49N G51E T69A ...     370/370
(100 %)
11 diff
(97.1 %id)
M11949   .d 643 to 1016 59 to 432 exact     374/432
(86 %)
6 diff
(98.7 %id)
BM855648 stomach .d 643 to 1011 1 to 368 exact     368/368
(100 %)
1 diff
(99.8 %id)
BM090551 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .d 644 to 1018 11 to 385 exact AAA   375/385
(97 %)
7 diff
(98.2 %id)
TI_57164735   .d 651 to 1018 27 to 394 exact AAA   368/394
(93 %)
6 diff
(98.5 %id)
AA845156 Pancreas .d 655 to 972 318 to 1 exact     318/318
(100 %)
0 diff
(100 %id)
BI835329 pooled pancreas and spleen .d 656 to 1018 1 to 363 exact AAA   363/363
(100 %)
0 diff
(100 %id)
BG141336 Islets of Langerhans, Pancreas .d 657 to 1018 1 to 362 exact AAA   362/362
(100 %)
0 diff
(100 %id)
AW005713 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 663 to 1019 356 to 1 exact     356/356
(100 %)
2 diff
(99.5 %id)
BP421293 small intestine .d 664 to 1018 1 to 355 exact   Submitted on the opposite strand 355/360
(98 %)
2 diff
(99.5 %id)
AA551894 colon, tumor .d 665 to 1018 356 to 3 exact     354/356
(99 %)
0 diff
(100 %id)
BM773093 Ascites, stomach .d 665 to 1012 1 to 344 L9*     344/344
(100 %)
4 diff
(98.9 %id)
BI836381 pooled pancreas and spleen .d 666 to 1018 1 to 353 exact AAA   353/353
(100 %)
0 diff
(100 %id)
TI_57162817   .d 666 to 1018 35 to 387 exact AAA   353/387
(91 %)
6 diff
(98.5 %id)
TI_57182867   .d 667 to 1018 34 to 385 C79G AAA   352/385
(91 %)
8 diff
(98.0 %id)
TI_57183008   .d 667 to 980 33 to 348 C32M Y33L N34Q E35V L36N ... AAA   316/595
(53 %)
10 diff
(98.4 %id)
BI770923 pooled lung and spleen .d 668 to 980 1 to 315 C32M Y33L N34Q E35V L36N ...     315/590
(53 %)
4 diff
(99.4 %id)
BI771478 pooled lung and spleen .d 668 to 1018 1 to 351 C79G AAA   351/351
(100 %)
2 diff
(99.5 %id)
AA844948 Pancreas .d 670 to 1018 353 to 5 exact     349/353
(98 %)
0 diff
(100 %id)
AW471481 colon, moderately-differentiated adenocarcinoma .d 672 to 1018 347 to 1 L9X     347/373
(93 %)
2 diff
(99.5 %id)
BM843236 stomach .d 681 to 1018 1 to 338 exact AAA   338/338
(100 %)
0 diff
(100 %id)
BM843311 stomach .d 681 to 1018 1 to 338 exact AAA   338/338
(100 %)
0 diff
(100 %id)
BM855672 stomach .d 681 to 1017 1 to 337 exact     337/337
(100 %)
0 diff
(100 %id)
BP424247 small intestine .d 682 to 1019 1 to 341 D50*   Submitted on the opposite strand 341/343
(99 %)
5 diff
(98.6 %id)
AA627501 colon, colon tumor RER+ .d 683 to 1014 329 to 1 V3*     329/329
(100 %)
18 diff
(94.6 %id)
AI302919 2 pooled tumors (clear cell type), Kidney .d 683 to 1018 337 to 8 K2G V3T T4G G5L I6F ...     330/337
(97 %)
12 diff
(96.5 %id)
AA586834 colon, colon tumor RER+ .d 685 to 1018 336 to 2 exact     335/336
(99 %)
0 diff
(100 %id)
AA835291 Pancreas .d 685 to 1016 337 to 6 exact     332/337
(98 %)
0 diff
(100 %id)
BC025790 Pancreas, Spleen, adult pooled .d 686 to 1018 1 to 333 exact available from MGC, AAA   333/333
(100 %)
0 diff
(100 %id)
BI837747 pooled pancreas and spleen .d 686 to 1018 1 to 334 S16R L17S S18I G19W N20* AAA   334/334
(100 %)
1 diff
(99.8 %id)
TI_57165307   .d 686 to 1018 35 to 368 S16R L17S S18I G19W N20* AAA   334/368
(90 %)
6 diff
(98.4 %id)
AA845077 Pancreas .d 694 to 1018 329 to 6 exact     324/329
(98 %)
0 diff
(100 %id)
AA921372 Pancreas .d 696 to 1021 329 to 5 exact     325/329
(98 %)
0 diff
(100 %id)
AA569123 colon, colon tumor RER+ .d 697 to 1018 321 to 1 exact     321/321
(100 %)
1 diff
(99.7 %id)
BM090732 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .d 701 to 1018 1 to 318 E63D N64Y AAA   318/318
(100 %)
2 diff
(99.4 %id)
CV029553 mixed .d 701 to 939 1 to 239       239/424
(56 %)
1 diff
(99.8 %id)
BG661253 Islets of Langerhans, Pancreas .d 701 to 1018 1 to 318 exact AAA   318/335
(94 %)
1 diff
(99.8 %id)
AI362622 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 702 to 1018 317 to 1       317/317
(100 %)
0 diff
(100 %id)
BM090780 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .d 706 to 1018 314 to 2       313/314
(99 %)
0 diff
(100 %id)
AI310323 2 pooled tumors (clear cell type), Kidney .d 715 to 1018 309 to 6       304/309
(98 %)
0 diff
(100 %id)
AI459618 colon .d 716 to 1017 308 to 7       302/308
(98 %)
0 diff
(100 %id)
BM090949 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) .d 732 to 1018 316 to 31   AAA   286/286
(100 %)
6 diff
(98.0 %id)
AA919095 2 pooled tumors (clear cell type), Kidney .d 765 to 1019 262 to 7       256/262
(97 %)
0 diff
(100 %id)
BU951541 Pancreas, Purified pancreatic islet .d 769 to 1018 1 to 251   fully sequenced, AAA   251/251
(100 %)
3 diff
(98.9 %id)
AA844953 Pancreas .d 775 to 1019 250 to 7       244/250
(97 %)
0 diff
(100 %id)
AI571643 adenocarcinoma, Pancreas .d 781 to 1018 238 to 1       238/406
(58 %)
3 diff
(99.3 %id)
AI362470 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 785 to 1018 234 to 1       234/234
(100 %)
0 diff
(100 %id)
BG951475 colon .d 786 to 984 14 to 210       197/210
(93 %)
8 diff
(96.2 %id)
BG952282 colon .d 790 to 984 18 to 212       195/212
(91 %)
6 diff
(97.2 %id)
BG951323 colon .d 792 to 993 209 to 8       202/209
(96 %)
0 diff
(100 %id)
BG951466 colon .d 792 to 975 190 to 10       181/190
(95 %)
0 diff
(100 %id)
BG951962 colon .d 792 to 986 210 to 17       194/210
(92 %)
0 diff
(100 %id)
BG952178 colon .d 792 to 981 193 to 1       193/194
(99 %)
13 diff
(93.3 %id)
BG953469 colon .d 792 to 982 206 to 20       187/206
(90 %)
0 diff
(100 %id)
BG952198 colon .d 799 to 984 1 to 186       186/186
(100 %)
2 diff
(99.0 %id)
AA835382 Pancreas .d 807 to 974 168 to 1       168/168
(100 %)
1 diff
(99.5 %id)
BU951290 Pancreas, Purified pancreatic islet .d 831 to 1018 188 to 1   fully sequenced,   188/188
(100 %)
2 diff
(99.0 %id)
BM768854 stomach .d 873 to 1019 1 to 147   AAA   147/147
(100 %)
0 diff
(100 %id)
BM856185 stomach .d 880 to 1019 1 to 140   AAA   140/140
(100 %)
0 diff
(100 %id)
BQ082663 stomach .d 880 to 1019 1 to 140   AAA   140/140
(100 %)
0 diff
(100 %id)
BM783834 stomach .d 882 to 1018 1 to 137   AAA   137/137
(100 %)
0 diff
(100 %id)
BM967166 Islets of Langerhans, Pancreas .d 932 to 1016 1 to 85       85/101
(84 %)
1 diff
(99.1 %id)
BM967327 Islets of Langerhans, Pancreas .d 932 to 1016 1 to 85       85/101
(84 %)
1 diff
(99.1 %id)
BX490381   .e 1 to 501 1 to 501 S4L G13R D24G tiling clone,   501/501
(100 %)
3 diff
(99.5 %id)
CD356344 Blood vessels - aorta, basilar and artery .f 1 to 341 5 to 345 exact tiling clone, AAA   345/345
(100 %)
3 diff
(99.2 %id)
BC021680 Prostate, adenocarcinoma. .f 1 to 337 6 to 342 S4L available from MGC, AAA   338/338
(100 %)
1 diff
(99.8 %id)
CD556191 embryonic trophoblasts, made from WA01 stemcells .f 1 to 343 21 to 364 S4L L15S V16C F18I L19P ... AAA   345/364
(94 %)
7 diff
(98.1 %id)
DW408884 Liver .f 1 to 323 19 to 341 F18I     324/341
(95 %)
8 diff
(97.7 %id)
DA374994 thalamus .f 1 to 572 2 to 570 S4L tiling clone, capped   569/569
(100 %)
2 diff
(99.7 %id)
BF102589 adenocarcinoma, Prostate .f 19 to 341 1 to 321 S4L AAA   321/321
(100 %)
4 diff
(98.8 %id)
W23624 heart .f 49 to 342 301 to 1       301/301
(100 %)
6 diff
(98.1 %id)
AI591033 ovary, tumor, 5 pooled (see description) .f 56 to 341 286 to 1       286/286
(100 %)
1 diff
(99.7 %id)
BX498806 Liver .g 1 to 558 1 to 559 exact tiling clone,   559/559
(100 %)
2 diff
(99.7 %id)
DA043101 bladder .g 25 to 597 2 to 575 L36X N37* tiling clone, capped   574/574
(100 %)
2 diff
(99.7 %id)
BF327364 breast_normal .h 1 to 327 331 to 2 D4N S36T tiling clone,   330/332
(99 %)
4 diff
(98.8 %id)
DA044552 bladder .h 221 to 752 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA039118 bladder .h 222 to 789 2 to 569   tiling clone, capped   568/568
(100 %)
0 diff
(100 %id)
DA039216 bladder .h 257 to 830 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DA045200 bladder .h 258 to 821 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
BX495705 Liver .h 296 to 818 1 to 524       524/526
(99 %)
3 diff
(99.5 %id)
BX497081 Liver .h 379 to 885 1 to 507   tiling clone,   507/507
(100 %)
9 diff
(98.3 %id)
AA479470 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i-u 1 to 425 1 to 425 K48N tiling clone,   425/425
(100 %)
2 diff
(99.6 %id)
BF328580 breast_normal .i-u 342 to 594 38 to 290   tiling clone,   253/299
(84 %)
6 diff
(98.0 %id)
DB204939 trachea .j 1 to 572 2 to 573 exact tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
AI961220 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .k 1 to 487 510 to 24 R8K tiling clone, AAA   487/487
(100 %)
7 diff
(98.6 %id)
DA890716 rectum Gene C5orf46andSPINK1, variant not shown       capped This clone was ignored    
DB330502 rectum Gene C5orf46andSPINK1, variant not shown         This clone was ignored    
Y00705 sigmoid colon Gene C5orf46andSPINK1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j, .k Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DI