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Gene SPATA6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
124 supporting clones for gene SPATA6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK301770 testis .a 1 to 1635 1 to 1633 L45H K74R D75Q K76R E77G ... tiling clone,   1633/1633
(100 %)
4 diff
(99.8 %id)
DC395194 testis .a 1 to 563 1 to 561       561/561
(100 %)
3 diff
(99.5 %id)
DB057289 testis .b 1 to 236 11 to 246   tiling clone, capped   236/245
(96 %)
6 diff
(97.6 %id)
NM_019073.2   .b 18 to 5021 1 to 5004 exact RefSeq, AAA   5004/5004
(100 %)
0 diff
(100 %id)
DB025426 testis .b 19 to 543 2 to 526   capped   525/525
(100 %)
1 diff
(99.9 %id)
DB058084 testis .b 19 to 566 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB024538 testis .b 21 to 577 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DB046000 testis .b 21 to 590 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB047156 testis .b 21 to 584 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DB038670 testis .b 24 to 601 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DB040462 testis .b 46 to 614 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DB042235 testis .b 46 to 505 2 to 461   capped   460/460
(100 %)
0 diff
(100 %id)
DA754340   .b 47 to 549 2 to 504   capped   503/503
(100 %)
2 diff
(99.7 %id)
AK000869 whole embryo, mainly head .b 49 to 1787 1 to 1739 exact tiling clone, available from FLJ,   1739/1739
(100 %)
0 diff
(100 %id)
DB032312 testis .b 49 to 577 2 to 530   capped   529/529
(100 %)
1 diff
(99.9 %id)
AU116876 whole embryo, mainly head .b 50 to 795 2 to 750   capped   749/750
(99 %)
5 diff
(99.4 %id)
DB047364 testis .b 50 to 615 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB457197 testis .b 51 to 543 1 to 493     Submitted on the opposite strand 493/493
(100 %)
0 diff
(100 %id)
TI_44351011   .b 57 to 570 125 to 651       527/653
(80 %)
29 diff
(95.6 %id)
DN996588 breast cancer, Mammary gland (cancer tissue) .b 61 to 759 1 to 699       699/699
(100 %)
5 diff
(99.3 %id)
DB458297 testis .b 67 to 550 1 to 484     Submitted on the opposite strand 484/484
(100 %)
2 diff
(99.6 %id)
CN428258 embryonic stem cells, cell lines H1, H7, andH9 .b 85 to 730 1 to 645       645/645
(100 %)
2 diff
(99.7 %id)
CN428259 embryonic stem cells, DMSO-treated H9 cellline .b 91 to 406 1 to 316       316/316
(100 %)
0 diff
(100 %id)
DB108843 thymus .b 189 to 767 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
BG503847 embryonal carcinoma, testis .b 211 to 994 1 to 796       796/859
(92 %)
33 diff
(96.2 %id)
EL735484 mixed .b 214 to 812 1 to 598       598/598
(100 %)
4 diff
(99.4 %id)
TI_1948222347   .b 214 to 918 129 to 836       708/1420
(49 %)
17 diff
(98.9 %id)
TI_1948222348   .b 214 to 1081 132 to 1001       870/1292
(67 %)
27 diff
(98.0 %id)
TI_1948222653   .b 214 to 990 131 to 905       775/1413
(54 %)
28 diff
(98.1 %id)
TI_1948222654   .b 214 to 1081 136 to 999       864/1206
(71 %)
17 diff
(98.6 %id)
TI_1948222951   .b 214 to 966 124 to 885       762/1466
(51 %)
23 diff
(98.5 %id)
TI_1948223267   .b 214 to 1054 127 to 964       838/1438
(58 %)
31 diff
(97.9 %id)
TI_1948223268   .b 214 to 1082 134 to 1006   AAA   873/1350
(64 %)
29 diff
(97.9 %id)
CN428261 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 227 to 880 1 to 654       654/654
(100 %)
0 diff
(100 %id)
CN428257 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 249 to 906 1 to 657       657/657
(100 %)
1 diff
(99.9 %id)
BG720886 testis .b 321 to 700 138 to 515       378/516
(73 %)
12 diff
(97.7 %id)
CB989040 Human Placenta, placenta .b 415 to 1054 28 to 673       646/763
(84 %)
18 diff
(97.7 %id)
AI240133 pooled .b 533 to 988 456 to 4       453/456
(99 %)
6 diff
(98.7 %id)
BQ320157 colon .b 589 to 764 179 to 4       176/179
(98 %)
1 diff
(99.5 %id)
AW592920 pooled .b 683 to 1066 384 to 1       384/393
(97 %)
0 diff
(100 %id)
DA600982   .b 717 to 1279 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA624644 Kidney .b 847 to 1389 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
BF980014 testis .b 889 to 1692 805 to 1       805/806
(99 %)
11 diff
(98.7 %id)
BI520668 brain, medulla .b 1028 to 1677 688 to 38       651/688
(94 %)
0 diff
(100 %id)
TI_43963852   .b 1028 to 1677 688 to 38       651/688
(94 %)
0 diff
(100 %id)
AU143847 whole embryo, mainly head .b 1239 to 1787 548 to 1       548/548
(100 %)
3 diff
(99.5 %id)
AA769927 pooled .b 1264 to 1744 481 to 1       481/481
(100 %)
0 diff
(100 %id)
AI139608   .b 1268 to 1743 478 to 3       476/478
(99 %)
0 diff
(100 %id)
DB508699 testis .b 1292 to 1715 1 to 424     Submitted on the opposite strand 424/424
(100 %)
3 diff
(99.3 %id)
AW340418 pooled .b 1448 to 1743 301 to 6       296/301
(98 %)
0 diff
(100 %id)
AL036488 brain .b 1535 to 1745 1 to 211   AAA   211/211
(100 %)
4 diff
(98.2 %id)
BX099038 multiple sclerosis lesions .b 1979 to 2605 1 to 627   tiling clone,   627/627
(100 %)
0 diff
(100 %id)
N79901 multiple sclerosis lesions .b 2011 to 2404 1 to 404       404/412
(98 %)
11 diff
(97.4 %id)
TI_149296299   .b 2148 to 2911 845 to 88   tiling clone, AAA   758/967
(78 %)
8 diff
(99.2 %id)
AI375752   .b 2178 to 2571 395 to 2       394/395
(99 %)
0 diff
(100 %id)
BU684281 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 2212 to 2911 717 to 19   AAA   699/699
(100 %)
1 diff
(99.9 %id)
AA449136   .b 2406 to 2735 1 to 330       330/330
(100 %)
10 diff
(97.0 %id)
N52855 multiple sclerosis lesions .b 2441 to 2897 459 to 1       459/459
(100 %)
4 diff
(99.2 %id)
N62993 multiple sclerosis lesions .b 2451 to 2897 447 to 1       447/449
(99 %)
2 diff
(99.6 %id)
AI827433 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 2457 to 2905 450 to 2       449/450
(99 %)
0 diff
(100 %id)
DB513636 testis .b 2499 to 2905 1 to 412     Submitted on the opposite strand 412/413
(99 %)
14 diff
(96.7 %id)
DB522644 testis .b 2502 to 2905 1 to 404     Submitted on the opposite strand 404/404
(100 %)
3 diff
(99.3 %id)
BG674490 skin .b 2567 to 3254 1 to 694       694/720
(96 %)
20 diff
(97.3 %id)
FN112522 breast carcinoma .b 2625 to 2692 1 to 66       66/67
(98 %)
3 diff
(95.6 %id)
AI565303 pooled .b 2681 to 2911 231 to 1       231/231
(100 %)
0 diff
(100 %id)
R13780 whole brain .b 2773 to 3207 1 to 455       455/457
(99 %)
22 diff
(95.2 %id)
R23679 whole brain .b 2773 to 3167 1 to 405       405/417
(97 %)
12 diff
(97.2 %id)
AL121421 melanoma (MeWo cell line) .b 2843 to 3378 1 to 534   tiling clone,   534/534
(100 %)
1 diff
(99.9 %id)
AL048159 uterus .b 3478 to 4264 1 to 787   tiling clone,   787/787
(100 %)
3 diff
(99.7 %id)
BC040655 Brain, hypothalamus .b 3603 to 5021 1 to 1419   tiling clone, available from MGC, AAA   1419/1419
(100 %)
11 diff
(99.3 %id)
BG715158 brain, hypothalamus .b 3603 to 4389 1 to 807   available from MGC,   807/813
(99 %)
19 diff
(97.7 %id)
BI494131 cochlea, ear .b 3634 to 4165 1 to 532   fully sequenced, AAA   532/532
(100 %)
5 diff
(99.1 %id)
AW303405 pooled .b 3843 to 4394 560 to 9       552/560
(98 %)
0 diff
(100 %id)
DB523793 testis .b 3929 to 4387 1 to 459     Submitted on the opposite strand 459/459
(100 %)
0 diff
(100 %id)
AA476607   .b 3997 to 4394 401 to 4       398/401
(99 %)
0 diff
(100 %id)
R37638 whole brain .b 4008 to 4389 395 to 8       388/477
(81 %)
0 diff
(100 %id)
BM931765 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 4035 to 4272 1 to 236   fully sequenced,   236/236
(100 %)
1 diff
(99.6 %id)
BI494130 cochlea, ear .b 4090 to 4165 114 to 39   fully sequenced, AAA   76/76
(100 %)
3 diff
(96.1 %id)
GD161117   .b 4096 to 4165 1 to 70   AAA   70/70
(100 %)
4 diff
(94.3 %id)
AI824719 adenocarcinoma, Pancreas .b 4115 to 4393 319 to 40   AAA   280/280
(100 %)
1 diff
(99.7 %id)
BM675558 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 4242 to 4901 675 to 19   fully sequenced, AAA   657/657
(100 %)
2 diff
(99.7 %id)
FN086751 breast carcinoma .b 4318 to 4387 1 to 68       68/69
(98 %)
3 diff
(95.7 %id)
AL048160 uterus .b 4361 to 5020 663 to 6   tiling clone,   658/663
(99 %)
0 diff
(100 %id)
AI188666 placenta .b 4476 to 4899 435 to 13   AAA   423/423
(100 %)
1 diff
(99.8 %id)
FN047802 breast carcinoma .b 4576 to 4650 1 to 78       78/78
(100 %)
3 diff
(96.2 %id)
AA886769 Kidney .b 4622 to 4901 280 to 1       280/280
(100 %)
0 diff
(100 %id)
DB451183 testis .c 1 to 487 1 to 488   tiling clone, Submitted on the opposite strand 488/488
(100 %)
10 diff
(98.0 %id)
BC020660 Testis, embryonal carcinoma .c 196 to 2478 1 to 2283 L25P K28I tiling clone, available from MGC, AAA   2283/2283
(100 %)
2 diff
(100.0 %id)
TI_1948223270   .c 829 to 1615 917 to 124       794/1105
(71 %)
16 diff
(98.6 %id)
TI_1948222349   .c 889 to 1615 862 to 125       738/1387
(53 %)
13 diff
(99.1 %id)
TI_1948222953   .c 891 to 1615 853 to 128       726/1329
(54 %)
7 diff
(99.5 %id)
TI_1948222656   .c 898 to 1615 856 to 129       728/1113
(65 %)
20 diff
(98.3 %id)
BE550330 pooled germ cell tumors .c 1148 to 1681 534 to 1       534/534
(100 %)
1 diff
(99.9 %id)
AA758994   .c 1221 to 1683 468 to 5       464/468
(99 %)
0 diff
(100 %id)
DB516673 testis .c 1235 to 1676 1 to 442     Submitted on the opposite strand 442/444
(99 %)
1 diff
(99.8 %id)
BG771751 testis .d 1 to 822 7 to 830   tiling clone,   830/830
(100 %)
16 diff
(98.1 %id)
DB035036 testis .d 1 to 558 2 to 559   tiling clone, capped   558/558
(100 %)
0 diff
(100 %id)
BX107566 brain, tumor, 5 pooled (see description) .d 745 to 1179 449 to 15   tiling clone, AAA   435/435
(100 %)
0 diff
(100 %id)
AI863328 brain, tumor, 5 pooled (see description) .d 813 to 1179 367 to 1       367/367
(100 %)
0 diff
(100 %id)
BG718353 testis .e 1 to 831 1 to 835   tiling clone,   835/839
(99 %)
13 diff
(98.5 %id)
BI827849 brain, medulla .e 25 to 831 1 to 808   tiling clone,   808/897
(90 %)
15 diff
(98.4 %id)
TI_57171893   .e 25 to 831 36 to 843       808/932
(86 %)
16 diff
(98.3 %id)
BI831762 brain, medulla .e 28 to 597 1 to 575       573/580
(98 %)
10 diff
(98.3 %id)
TI_57175685   .e 28 to 597 28 to 602       573/607
(94 %)
16 diff
(97.4 %id)
BI562550 testis .e 37 to 696 1 to 660   tiling clone,   660/660
(100 %)
6 diff
(99.1 %id)
TI_44350540   .e 42 to 696 113 to 767       655/767
(85 %)
8 diff
(99.0 %id)
CR748067   .e 48 to 559 1 to 511       511/511
(100 %)
1 diff
(99.9 %id)
BF109318 pooled .e 702 to 1200 510 to 12   tiling clone, AAA   499/499
(100 %)
0 diff
(100 %id)
CX166478 human embryonic stem cells differentiated toan early endodermal cell type .f 1 to 815 1 to 815 exact tiling clone,   815/815
(100 %)
1 diff
(99.9 %id)
DB451502 testis .g 1 to 493 7 to 499   tiling clone, Submitted on the opposite strand 499/499
(100 %)
1 diff
(99.8 %id)
DB516969 testis .g 794 to 1256 1 to 463   tiling clone, Submitted on the opposite strand 463/463
(100 %)
0 diff
(100 %id)
AW183572 pooled .h 1 to 462 464 to 2 L21X S27X T28N M29N P30A ... tiling clone,   463/464
(99 %)
1 diff
(99.8 %id)
AW303869 serous papillary carcinoma, high grade, 2pooled tumors, uterus .h 252 to 672 421 to 1   tiling clone,   421/421
(100 %)
2 diff
(99.6 %id)
DB472442.
matches multiple genes
hippocampus .i 1 to 492 1 to 492   tiling clone, also hits gene wuzarbo 492/492
(100 %)
0 diff
(100 %id)
CN428260 embryonic stem cells, cell lines H1, H7, andH9 .i 88 to 762 1 to 675       675/675
(100 %)
1 diff
(99.9 %id)
DA848096 placenta .i 134 to 708 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
CR592303 Placenta Cot 25-normalized .i 184 to 3127 1 to 2944 exact tiling clone,   2944/2944
(100 %)
0 diff
(100 %id)
AL572184 placenta, Placenta Cot 25-normalized .i 184 to 1280 1 to 1090 M8X F35X I41X I46X F57X ... AAA   1090/1110
(98 %)
36 diff
(96.8 %id)
BX348773 Placenta Cot 25-normalized .i 989 to 1895 1 to 911       911/911
(100 %)
12 diff
(98.7 %id)
BX371524 Placenta Cot 25-normalized .i 1654 to 2591 931 to 1       931/934
(99 %)
22 diff
(97.7 %id)
AL572269 placenta, Placenta Cot 25-normalized .i 2099 to 3076 1029 to 55       975/1042
(93 %)
17 diff
(98.4 %id)
DA397515 thalamus .j-u 1 to 595 2 to 596 N4S L22S tiling clone, capped   595/595
(100 %)
3 diff
(99.5 %id)
AA382218 testis .j-u 445 to 682 11 to 249   tiling clone,   239/251
(95 %)
2 diff
(99.3 %id)
BX479460   .j-u 511 to 1057 1 to 550   tiling clone,   550/550
(100 %)
3 diff
(99.5 %id)
BF351548 head_neck .j-u 668 to 1084 15 to 427   tiling clone,   413/438
(94 %)
13 diff
(97.1 %id)
BE169810 head_neck .j-u 673 to 1002 17 to 341       325/347
(93 %)
13 diff
(96.3 %id)
DA110915 cerebellum .k 1 to 594 2 to 595 exact tiling clone, capped   594/594
(100 %)
0 diff
(100 %id)
BF357978 leiomios .k 469 to 867 1 to 400   tiling clone,   400/400
(100 %)
5 diff
(98.8 %id)
DB034721 testis .l 1 to 576 2 to 577   tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
AA345356 gall bladder Gene SPATA6, variant not shown         Suspected internal deletion, this clone was ignored    
BM678842 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene SPATA6, variant not shown       fully sequenced, AAA Suspected internal deletion, this clone was ignored    
BM720265 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene SPATA6, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
BX470826   Gene SPATA6, variant not shown              
BX470827   Gene SPATA6, variant not shown       AAA      
AW956680   Gene SPATA6, variant not shown         Suspected internal deletion, this clone was ignored    
DA068524 cerebellum Gene SPATA6, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C