To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene SOX8TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
126 supporting clones for gene SOX8 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB481199 hippocampus .a 1 to 438 1 to 438   tiling clone,   438/438
(100 %)
0 diff
(100 %id)
DB496414 hypothalamus .a 1 to 475 1 to 475       475/475
(100 %)
1 diff
(99.8 %id)
DB503819 hypothalamus .a 8 to 489 1 to 482       482/482
(100 %)
1 diff
(99.8 %id)
BQ879994 dorsal root ganglia .a 15 to 487 1 to 474       474/1068
(44 %)
7 diff
(99.4 %id)
BC031797 Brain, anaplastic oligodendroglioma with1p/19q loss .a 39 to 3086 1 to 3048   tiling clone, available from MGC, AAA   3048/3048
(100 %)
7 diff
(99.8 %id)
NM_014587.3   .a 39 to 3087 1 to 3049   RefSeq,   3049/3049
(100 %)
0 diff
(100 %id)
BG910187 anaplastic oligodendroglioma with 1p/19qloss, brain .a 40 to 667 1 to 624       624/625
(99 %)
12 diff
(98.1 %id)
BI554157 anaplastic oligodendroglioma with 1p/19qloss, brain .a 41 to 736 1 to 724       724/724
(100 %)
37 diff
(94.9 %id)
AF226675   .a 154 to 1494 1 to 1341       1341/1341
(100 %)
1 diff
(100.0 %id)
CA396432 eye, RPE/choroid .a 159 to 547 1 to 389       389/389
(100 %)
26 diff
(93.4 %id)
BG913507 anaplastic oligodendroglioma with 1p/19qloss, brain .a 423 to 1038 1 to 630       630/632
(99 %)
33 diff
(94.8 %id)
BG911279 anaplastic oligodendroglioma with 1p/19qloss, brain .a 499 to 1029 11 to 543       533/690
(77 %)
13 diff
(98.2 %id)
AF164104   .a 508 to 3086 1 to 2579   tiling clone,   2579/2579
(100 %)
1 diff
(100.0 %id)
BG912190 anaplastic oligodendroglioma with 1p/19qloss, brain .a 548 to 1025 12 to 485       474/485
(97 %)
11 diff
(97.8 %id)
BG911458 anaplastic oligodendroglioma with 1p/19qloss, brain .a 552 to 1055 1 to 536       536/637
(84 %)
49 diff
(92.4 %id)
BF530357 anaplastic oligodendroglioma with 1p/19qloss, brain .a 754 to 1025 1 to 271       271/271
(100 %)
2 diff
(99.3 %id)
BF529917 anaplastic oligodendroglioma with 1p/19qloss, brain .a 848 to 1513 1 to 664       664/890
(74 %)
40 diff
(95.6 %id)
BG910388 anaplastic oligodendroglioma with 1p/19qloss, brain .a 852 to 1025 1 to 174       174/174
(100 %)
1 diff
(99.5 %id)
BG820712 anaplastic oligodendroglioma with 1p/19qloss, brain .a 884 to 1622 1 to 743       743/744
(99 %)
23 diff
(97.0 %id)
BG911707 anaplastic oligodendroglioma with 1p/19qloss, brain .a 909 to 1025 1 to 118       118/118
(100 %)
2 diff
(98.4 %id)
BF528890 anaplastic oligodendroglioma with 1p/19qloss, brain .a 953 to 1025 1 to 74       74/74
(100 %)
1 diff
(98.7 %id)
BG910328 anaplastic oligodendroglioma with 1p/19qloss, brain .a 975 to 1562 1 to 595       595/595
(100 %)
26 diff
(95.7 %id)
BG910450 anaplastic oligodendroglioma with 1p/19qloss, brain .a 976 to 1025 1 to 51       51/51
(100 %)
1 diff
(98.1 %id)
BX280963 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1006 to 1339 1 to 334       334/334
(100 %)
1 diff
(99.8 %id)
BF347364 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1181 to 1864 13 to 698       686/883
(77 %)
30 diff
(96.7 %id)
BF527906 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1294 to 2075 1 to 778       778/779
(99 %)
40 diff
(94.9 %id)
BM906931 brain, hippocampus .a 1294 to 2093 12 to 813       802/1079
(74 %)
16 diff
(98.6 %id)
BF531106 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1304 to 2060 1 to 766   AAA   766/940
(81 %)
34 diff
(96.4 %id)
BF530706 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1340 to 1856 1 to 517       517/518
(99 %)
3 diff
(99.5 %id)
BF346054 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1358 to 2099 1 to 737       737/943
(78 %)
17 diff
(98.2 %id)
BG910800 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1428 to 2085 41 to 715       675/951
(70 %)
37 diff
(96.2 %id)
BG819182 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1487 to 2220 1 to 734       734/738
(99 %)
20 diff
(97.3 %id)
BF526543 brain, glioblastoma with EGFR amplification .a 1496 to 2171 24 to 691       668/1059
(63 %)
23 diff
(97.9 %id)
BG910278 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1558 to 2337 1 to 778       778/788
(98 %)
19 diff
(97.6 %id)
BF529117 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1567 to 2384 1 to 803       803/809
(99 %)
28 diff
(96.6 %id)
BG818976 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1567 to 2318 5 to 762       758/762
(99 %)
6 diff
(99.3 %id)
BG914259 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1587 to 2392 29 to 829       801/840
(95 %)
20 diff
(97.7 %id)
AI880068 brain, oligodendroglioma .a 1589 to 1988 401 to 1       401/401
(100 %)
3 diff
(99.3 %id)
AA326193 brain, cerebellum .a 1598 to 1904 1 to 306       306/306
(100 %)
5 diff
(98.4 %id)
AW961218   .a 1598 to 2172 1 to 575       575/580
(99 %)
16 diff
(97.3 %id)
AW292749   .a 1607 to 2141 548 to 16   AAA   533/533
(100 %)
3 diff
(99.5 %id)
BF529204 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1675 to 2389 1 to 708       708/782
(90 %)
33 diff
(95.8 %id)
BG911118 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1718 to 2316 1 to 599       599/599
(100 %)
0 diff
(100 %id)
CD558428 White Matter .a 1720 to 2307 24 to 606       583/986
(59 %)
16 diff
(98.4 %id)
R15122 whole brain .a 1772 to 2135 1 to 367       367/368
(99 %)
9 diff
(97.6 %id)
DB475376 hippocampus .a 1838 to 2310 1 to 473       473/473
(100 %)
1 diff
(99.8 %id)
BG911508 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1839 to 2316 1 to 479       479/479
(100 %)
3 diff
(99.4 %id)
BG911055 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1847 to 2316 11 to 480       470/480
(97 %)
6 diff
(98.8 %id)
BF347048 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1849 to 2316 1 to 470       470/470
(100 %)
6 diff
(98.8 %id)
BF529946 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1850 to 2316 1 to 467       467/467
(100 %)
0 diff
(100 %id)
BG819070 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1851 to 2316 1 to 465       465/465
(100 %)
1 diff
(99.8 %id)
BG910776 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1851 to 2316 14 to 482       469/482
(97 %)
7 diff
(98.6 %id)
BF345238 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1852 to 2616 1 to 777       777/957
(81 %)
72 diff
(92.5 %id)
BG912209 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1852 to 2316 1 to 466       466/466
(100 %)
1 diff
(99.8 %id)
BF529033 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1854 to 2316 1 to 466       466/466
(100 %)
8 diff
(98.3 %id)
AA248419   .a 1861 to 2085 1 to 225       225/225
(100 %)
0 diff
(100 %id)
BF345136 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1862 to 2316 1 to 454       454/454
(100 %)
1 diff
(99.8 %id)
BG910954 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1862 to 2316 1 to 455       455/455
(100 %)
0 diff
(100 %id)
BG820231 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1863 to 2316 1 to 454       454/454
(100 %)
0 diff
(100 %id)
F08042 brain, total brain .a 1924 to 2251 1 to 328       328/328
(100 %)
0 diff
(100 %id)
CR603537 fetal brain .a 1924 to 3024 1 to 1101       1101/1101
(100 %)
0 diff
(100 %id)
AL568196 brain, fetal brain .a 1924 to 2843 1 to 923       923/923
(100 %)
7 diff
(99.3 %id)
H16632 whole brain .a 1925 to 2383 1 to 462       462/462
(100 %)
9 diff
(98.1 %id)
AI880097 astrocytoma, brain .a 1995 to 2245 1 to 251     Submitted on the opposite strand 251/251
(100 %)
0 diff
(100 %id)
CF455496 peripheral nervous system .a 1999 to 2767 36 to 804       769/804
(95 %)
6 diff
(99.3 %id)
BF529282 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2017 to 2082 372 to 435       397/436
(91 %)
19 diff
(95.7 %id)
AA330929 embryo .a 2117 to 2327 1 to 211       211/211
(100 %)
0 diff
(100 %id)
BG820982 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2132 to 2316 8 to 192       185/192
(96 %)
6 diff
(96.9 %id)
BF346208 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2150 to 2316 1 to 167       167/167
(100 %)
1 diff
(99.5 %id)
BF348111 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2170 to 2316 7 to 151       145/151
(96 %)
6 diff
(96.1 %id)
H43928 breast .a 2185 to 2427 1 to 241       241/430
(56 %)
3 diff
(99.4 %id)
BF529880 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2206 to 2316 1 to 111       111/111
(100 %)
1 diff
(99.1 %id)
BF922506 nervous_tumor .a 2266 to 2666 406 to 5     Submitted on the opposite strand 402/422
(95 %)
0 diff
(100 %id)
BQ339351 nervous_normal .a 2282 to 2710 1 to 432       432/432
(100 %)
23 diff
(94.7 %id)
N57615 multiple sclerosis lesions .a 2291 to 2676 1 to 394   fully sequenced,   394/394
(100 %)
14 diff
(96.5 %id)
BF528714 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2350 to 3086 11 to 738   AAA   728/749
(97 %)
15 diff
(98.0 %id)
BF528587 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2350 to 3086 10 to 743   AAA   734/743
(98 %)
6 diff
(99.2 %id)
AI459734 brain, oligodendroglioma .a 2385 to 2838 1 to 454     Submitted on the opposite strand 454/454
(100 %)
1 diff
(99.8 %id)
BM715144 eye, human retina .a 2409 to 2986 1 to 578       578/578
(100 %)
5 diff
(99.2 %id)
TI_153966035   .a 2409 to 2985 97 to 679       583/1290
(45 %)
24 diff
(98.2 %id)
BF948984 nervous_normal .a 2414 to 2831 429 to 12       418/429
(97 %)
0 diff
(100 %id)
BG913457 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2424 to 3002 1 to 581       581/581
(100 %)
9 diff
(98.5 %id)
AA429327 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2461 to 3004 1 to 541       541/541
(100 %)
4 diff
(99.3 %id)
BF527050.
matches multiple genes
anaplastic oligodendroglioma with 1p/19qloss, brain, Brain, anaplastic oligodendroglioma with1p/19q loss .a 2525 to 3085 1 to 577   available from MGC, also hits gene faflawbu 577/593
(97 %)
7 diff
(98.9 %id)
BF528727 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2538 to 3086 1 to 546   AAA   546/546
(100 %)
5 diff
(99.1 %id)
AI675177 anaplastic oligodendroglioma, brain .a 2544 to 3087 548 to 5       544/548
(99 %)
0 diff
(100 %id)
AI568565 anaplastic oligodendroglioma, brain .a 2546 to 3086 541 to 1       541/541
(100 %)
2 diff
(99.7 %id)
BM717289 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2560 to 2926 1 to 367       367/367
(100 %)
2 diff
(99.5 %id)
BG820767 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2582 to 3086 1 to 509       509/543
(93 %)
10 diff
(98.2 %id)
DB550731 hippocampus .a 2591 to 3086 1 to 496     Submitted on the opposite strand 496/496
(100 %)
0 diff
(100 %id)
AI421997 brain, glioblastoma (pooled) .a 2593 to 3086 494 to 1       494/494
(100 %)
0 diff
(100 %id)
AW081671 colon, moderately differentiated adenocarcinoma .a 2594 to 3086 514 to 22   AAA   493/493
(100 %)
0 diff
(100 %id)
DB550016 hippocampus .a 2600 to 3084 1 to 486     Submitted on the opposite strand 486/488
(99 %)
11 diff
(97.8 %id)
AI151033 brain, glioblastoma (pooled) .a 2600 to 3086 488 to 1       488/488
(100 %)
1 diff
(99.8 %id)
DB575063 hypothalamus .a 2607 to 3085 1 to 479     Submitted on the opposite strand 479/479
(100 %)
0 diff
(100 %id)
R44028 whole brain .a 2608 to 3086 492 to 12   AAA   481/481
(100 %)
12 diff
(97.6 %id)
AW008587 brain, glioblastoma (pooled) .a 2610 to 3086 477 to 1       477/477
(100 %)
0 diff
(100 %id)
DB544201 hippocampus .a 2615 to 3085 1 to 471     Submitted on the opposite strand 471/471
(100 %)
2 diff
(99.6 %id)
AI333191 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2632 to 3086 465 to 11   AAA   455/455
(100 %)
0 diff
(100 %id)
AI609018 anaplastic oligodendroglioma, brain .a 2632 to 3086 455 to 1       455/455
(100 %)
2 diff
(99.6 %id)
DB567435 hypothalamus .a 2635 to 3086 1 to 452     Submitted on the opposite strand 452/452
(100 %)
0 diff
(100 %id)
DB558290 hypothalamus .a 2641 to 3084 1 to 445     Submitted on the opposite strand 445/447
(99 %)
37 diff
(91.8 %id)
N52793 multiple sclerosis lesions .a 2646 to 3086 444 to 1   fully sequenced,   444/444
(100 %)
4 diff
(99.1 %id)
R41545 whole brain .a 2653 to 3086 458 to 11   AAA   448/452
(99 %)
15 diff
(96.7 %id)
H43890 breast .a 2688 to 3053 372 to 1       372/372
(100 %)
60 diff
(83.9 %id)
AI341639   .a 2694 to 3086 405 to 13   AAA   393/393
(100 %)
2 diff
(99.5 %id)
DB554713 hypothalamus .a 2698 to 3085 11 to 403     Submitted on the opposite strand 393/403
(97 %)
6 diff
(98.6 %id)
AA252125 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2701 to 3086 386 to 1       386/386
(100 %)
0 diff
(100 %id)
AI263761 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2701 to 3087 389 to 3       387/389
(99 %)
0 diff
(100 %id)
AI651764 pooled germ cell tumors .a 2704 to 3087 386 to 3       384/386
(99 %)
0 diff
(100 %id)
TI_154124306   .a 2709 to 3086 464 to 86   AAA   379/986
(38 %)
1 diff
(99.9 %id)
AI953267 anaplastic oligodendroglioma, brain .a 2715 to 3085 392 to 22   AAA   371/371
(100 %)
12 diff
(96.8 %id)
H16586 whole brain .a 2716 to 3086 393 to 22   AAA   372/372
(100 %)
3 diff
(99.2 %id)
AI497923 anaplastic oligodendroglioma, brain .a 2723 to 3087 369 to 5       365/369
(98 %)
0 diff
(100 %id)
BF445316 Prostate .a 2725 to 3087 363 to 1       363/363
(100 %)
0 diff
(100 %id)
H14495 whole brain .a 2727 to 3086 368 to 1       368/430
(85 %)
13 diff
(97.0 %id)
BG057090 anaplastic oligodendroglioma, brain .a 2734 to 3087 356 to 3       354/356
(99 %)
0 diff
(100 %id)
AI696654 Prostate .a 2739 to 3087 351 to 3       349/351
(99 %)
0 diff
(100 %id)
BG055771 anaplastic oligodendroglioma, brain .a 2755 to 3087 336 to 4       333/336
(99 %)
0 diff
(100 %id)
BG152478 brain, glioblastoma without EGFR amplification .a 2757 to 3087 336 to 5       332/336
(98 %)
0 diff
(100 %id)
AA904134 Dorsal root ganglion, peripheral nervous system .a 2767 to 3087 327 to 7       321/327
(98 %)
0 diff
(100 %id)
CB156566 brain .a 2783 to 3097 1 to 315   AAA   315/315
(100 %)
1 diff
(99.7 %id)
AA758812   .a 2785 to 3087 308 to 5       304/308
(98 %)
0 diff
(100 %id)
AW015479   .a 2798 to 3086 306 to 18   AAA   289/289
(100 %)
3 diff
(99.0 %id)
Z41122 brain, total brain .a 2825 to 3086 262 to 1       262/262
(100 %)
1 diff
(99.7 %id)
DB535823 hippocampus .a 2862 to 3086 1 to 225     Submitted on the opposite strand 225/225
(100 %)
8 diff
(96.5 %id)
BG056945 anaplastic oligodendroglioma, brain .a 2866 to 3087 223 to 2       222/223
(99 %)
0 diff
(100 %id)
AI470991 brain, glioblastoma (pooled) .a 2881 to 3087 207 to 1       207/207
(100 %)
0 diff
(100 %id)
AK024491 Spleen .b 1 to 4153 1 to 4149 A221V tiling clone, available from FLJ,   4149/4149
(100 %)
7 diff
(99.9 %id)
BF530555 anaplastic oligodendroglioma with 1p/19qloss, brain .b 1441 to 2012 1 to 578       578/728
(79 %)
16 diff
(97.9 %id)
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI