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Gene SOX30TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
90 supporting clones for gene SOX30 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB028068 testis .a 1 to 528 2 to 529   tiling clone, capped   528/528
(100 %)
0 diff
(100 %id)
DB446030 testis .a 11 to 438 1 to 431       431/431
(100 %)
18 diff
(95.9 %id)
TI_57177286   .a 12 to 752 64 to 805       742/805
(92 %)
6 diff
(99.3 %id)
BC033492 Brain, adult medulla .a 18 to 2658 1 to 2641 Q429K available from MGC, AAA   2641/2641
(100 %)
1 diff
(100.0 %id)
BI830793 brain, medulla .a 18 to 752 1 to 735       735/735
(100 %)
1 diff
(99.9 %id)
NM_178424.1   .a 18 to 3282 1 to 3265 exact RefSeq, AAA   3265/3265
(100 %)
0 diff
(100 %id)
CD358368 testis .a 26 to 556 1 to 531       531/949
(55 %)
34 diff
(96.5 %id)
BP370744 testis .a 39 to 593 1 to 554       554/554
(100 %)
4 diff
(99.3 %id)
DB058948 testis .a 62 to 315 2 to 255   capped   254/254
(100 %)
0 diff
(100 %id)
AB022083 testis .a 65 to 3282 1 to 3218 exact tiling clone, AAA   3218/3218
(100 %)
5 diff
(99.9 %id)
AK308329 testis .a 70 to 2783 1 to 2714 Q77*     2714/2714
(100 %)
1 diff
(100.0 %id)
DB460116 testis .a 70 to 536 1 to 467       467/467
(100 %)
1 diff
(99.8 %id)
DB029759 testis .a 71 to 641 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DB038983 testis .a 71 to 554 2 to 486   capped   485/486
(99 %)
3 diff
(99.4 %id)
DB056380 testis .a 71 to 655 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
DB092252 testis .a 71 to 608 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DB065893 testis .a 257 to 805 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DB067099 testis .a 261 to 739 2 to 480   capped   479/479
(100 %)
0 diff
(100 %id)
DB040230 testis .a 263 to 818 2 to 557   capped   556/557
(99 %)
3 diff
(99.5 %id)
DB045939 testis .a 263 to 816 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DB044440 testis .a 265 to 813 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DB065652 testis .a 265 to 815 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB075784 testis .a 266 to 772 2 to 509   capped   508/508
(100 %)
1 diff
(99.9 %id)
DB085249 testis .a 266 to 823 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
CD243909 testis .a 269 to 1016 1 to 755       755/856
(88 %)
18 diff
(97.9 %id)
DB076983 testis .a 277 to 808 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DB066148 testis .a 279 to 826 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB457858 testis .a 285 to 783 1 to 499       499/499
(100 %)
2 diff
(99.6 %id)
DB025118 testis .a 286 to 835 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB047484 testis .a 286 to 856 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DB068119 testis .a 286 to 567 2 to 283   capped   282/282
(100 %)
0 diff
(100 %id)
DB072981 testis .a 286 to 564 2 to 280   capped   279/279
(100 %)
0 diff
(100 %id)
DB082757 testis .a 286 to 851 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB085315 testis .a 286 to 836 2 to 553   capped   552/553
(99 %)
3 diff
(99.5 %id)
DB088735 testis .a 286 to 524 2 to 240   capped   239/239
(100 %)
0 diff
(100 %id)
DB089032 testis .a 286 to 834 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB043397 testis .a 314 to 888 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
BI458893 testis .a 355 to 1079 1 to 725       725/800
(90 %)
33 diff
(95.9 %id)
CV030262 mixed .a 360 to 950 1 to 591       591/591
(100 %)
1 diff
(99.9 %id)
BI829275 brain, medulla .a 412 to 1266 1 to 861       861/861
(100 %)
17 diff
(98.1 %id)
TI_57176011   .a 412 to 1266 70 to 930       861/930
(92 %)
6 diff
(99.4 %id)
TI_57174104   .a 418 to 1082 675 to 12     Submitted on the opposite strand 664/675
(98 %)
0 diff
(100 %id)
DB452363 testis .a 424 to 905 1 to 482       482/482
(100 %)
0 diff
(100 %id)
DB445278 testis .a 664 to 1072 1 to 409       409/410
(99 %)
11 diff
(97.4 %id)
DB100663 testis .a 705 to 1274 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB040774 testis .a 810 to 1381 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BI826497 brain, medulla .a 817 to 1065 248 to 1     Submitted on the opposite strand 248/248
(100 %)
2 diff
(99.2 %id)
DB054997 testis .a 983 to 1536 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB523352 testis .a 2292 to 2793 1 to 502     Submitted on the opposite strand 502/502
(100 %)
0 diff
(100 %id)
DB525554 testis .a 2350 to 2784 1 to 435     Submitted on the opposite strand 435/437
(99 %)
2 diff
(99.6 %id)
AI223411   .a 2361 to 2794 436 to 3       434/436
(99 %)
0 diff
(100 %id)
DB510300 testis .a 2386 to 2786 1 to 401     Submitted on the opposite strand 401/401
(100 %)
3 diff
(99.3 %id)
AI004117   .a 2562 to 2778 225 to 9       217/225
(96 %)
0 diff
(100 %id)
NM_007017.2   .b 1 to 2772 1 to 2772 exact RefSeq, AAA   2772/2772
(100 %)
0 diff
(100 %id)
AB022441 testis .b 48 to 2772 1 to 2725 exact tiling clone, AAA   2725/2725
(100 %)
5 diff
(99.9 %id)
DC398108 testis .c 1 to 572 1 to 572   tiling clone,   572/572
(100 %)
2 diff
(99.7 %id)
AK302162 testis .c 2 to 1667 1 to 1666 exact tiling clone,   1666/1666
(100 %)
0 diff
(100 %id)
BI827150 brain, medulla .c 14 to 844 1 to 828       828/831
(99 %)
17 diff
(98.0 %id)
TI_57174464   .c 14 to 844 29 to 856       828/859
(96 %)
22 diff
(97.5 %id)
BX100955   .c 495 to 965 1 to 471       471/471
(100 %)
0 diff
(100 %id)
AA401466   .c 496 to 975 1 to 479       479/479
(100 %)
4 diff
(99.2 %id)
BG005252 placenta_normal .c 854 to 1015 163 to 2       162/163
(99 %)
0 diff
(100 %id)
AI917320 pooled germ cell tumors .c 1014 to 1547 537 to 4       534/537
(99 %)
2 diff
(99.7 %id)
AI917322 pooled germ cell tumors .c 1055 to 1544 506 to 17   AAA   490/580
(84 %)
3 diff
(99.5 %id)
AA983409 pooled germ cell tumors .c 1077 to 1547 474 to 4       471/474
(99 %)
0 diff
(100 %id)
AI797722 pooled .c 1095 to 1544 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
DB511081 testis .c 1110 to 1544 6 to 440     Submitted on the opposite strand 435/441
(98 %)
6 diff
(98.7 %id)
AI138249   .c 1133 to 1545 417 to 5       413/417
(99 %)
0 diff
(100 %id)
AA400263   .c 1137 to 1544 408 to 1       408/408
(100 %)
0 diff
(100 %id)
BF478244 pooled germ cell tumors .c 1250 to 1563 317 to 5       313/359
(87 %)
0 diff
(100 %id)
AA994615   .c 1252 to 1547 300 to 5       296/300
(98 %)
0 diff
(100 %id)
BI551315 brain, hippocampus .d-u 1 to 921 1 to 914 exact available from MGC,   914/916
(99 %)
35 diff
(96.2 %id)
AK055284 brain .d-u 4 to 1051 1 to 1048 exact tiling clone, available from FLJ,   1048/1048
(100 %)
1 diff
(100.0 %id)
DA511866 brain .d-u 5 to 544 2 to 541 exact capped   540/540
(100 %)
1 diff
(99.9 %id)
BC035142 Brain, hippocampus .d-u 6 to 1044 1 to 1039 exact available from MGC, AAA   1039/1039
(100 %)
1 diff
(100.0 %id)
CB044023 colon, juvenile granulosa tumor .d-u 7 to 618 1 to 612 exact fully sequenced,   612/612
(100 %)
5 diff
(99.2 %id)
TI_44170069   .d-u 8 to 921 88 to 994 exact     907/996
(91 %)
31 diff
(96.9 %id)
DB462405 testis .d-u 24 to 512 1 to 489       489/490
(99 %)
2 diff
(99.6 %id)
AA083050   .d-u 57 to 430 1 to 378       378/382
(98 %)
20 diff
(94.8 %id)
DA320497 hippocampus .d-u 58 to 622 2 to 566 exact capped   565/565
(100 %)
0 diff
(100 %id)
BX110114   .d-u 286 to 771 1 to 485   AAA   485/485
(100 %)
5 diff
(99.0 %id)
AI191937   .d-u 343 to 771 442 to 14   AAA   429/433
(99 %)
1 diff
(99.8 %id)
CB044022 colon, juvenile granulosa tumor .d-u 588 to 1051 514 to 51   fully sequenced, AAA   464/464
(100 %)
14 diff
(97.0 %id)
DB316348 brain .d-u 630 to 1051 422 to 1       422/422
(100 %)
0 diff
(100 %id)
AA083051   .d-u 637 to 1046 413 to 1       413/413
(100 %)
15 diff
(96.4 %id)
DB527836 testis .d-u 737 to 1202 1 to 466   tiling clone, Submitted on the opposite strand 466/466
(100 %)
0 diff
(100 %id)
AI651883 pooled germ cell tumors .e 1 to 481 481 to 1 exact tiling clone,   481/481
(100 %)
0 diff
(100 %id)
AK225861 testis Gene SOX30, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BI830615 brain, medulla Gene SOX30, variant not shown         This clone was ignored    
BI827017 brain, medulla Gene SOX30, variant not shown         This clone was ignored    
BI825863 brain, medulla Gene SOX30, variant not shown         This clone was ignored    
TI_57171161   Gene SOX30, variant not shown         This clone was ignored    
TI_57173068   Gene SOX30, variant not shown         This clone was ignored    
TI_57174007   Gene SOX30, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI