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Gene SOX2OTTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
281 supporting clones for gene SOX2OT back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM474966 duodenal adenocarcinoma, cell line, small intestine SOX2OT.a 1 to 947 1 to 957 exact tiling clone,   957/1002
(95 %)
18 diff
(98.3 %id)
AI885646 anaplastic oligodendroglioma, brain SOX2OT.a 675 to 1072 401 to 4   tiling clone,   398/401
(99 %)
0 diff
(100 %id)
DA307129 hippocampus SOX2OT.b 1 to 466 2 to 467   tiling clone, capped   466/466
(100 %)
1 diff
(99.8 %id)
DA175740 amygdala SOX2OT.b 11 to 461 2 to 450   capped   449/449
(100 %)
2 diff
(99.6 %id)
DA082032 cerebellum SOX2OT.b 29 to 370 2 to 343   capped   342/342
(100 %)
1 diff
(99.8 %id)
DB015323 esophageal, tumor tissue SOX2OT.b 196 to 523 2 to 330   capped   329/330
(99 %)
5 diff
(98.5 %id)
DA164011 amygdala SOX2OT.b 259 to 829 2 to 572 exact tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
DA290283 hippocampus SOX2OT.b 265 to 845 2 to 582 exact capped   581/581
(100 %)
2 diff
(99.7 %id)
BI549039 brain, hippocampus SOX2OT.b 286 to 1062 1 to 802 L2S G3S T5G R6L G7T ...     796/802
(99 %)
53 diff
(93.4 %id)
BI916139 brain SOX2OT.b 290 to 1104 1 to 814 exact tiling clone,   814/814
(100 %)
4 diff
(99.6 %id)
TI_57239657   SOX2OT.b 290 to 1104 36 to 849 exact     814/849
(95 %)
9 diff
(99.0 %id)
DA130431 alzheimer cortex SOX2OT.b 292 to 849 2 to 559 exact capped   558/558
(100 %)
0 diff
(100 %id)
DA139670 alzheimer cortex SOX2OT.b 292 to 871 2 to 582 exact capped   581/581
(100 %)
1 diff
(99.9 %id)
DA175390 amygdala SOX2OT.b 296 to 863 2 to 569 exact capped   568/568
(100 %)
0 diff
(100 %id)
BI545922 brain, hippocampus SOX2OT.b 297 to 1109 6 to 814 V77G S78F F79I K80Q I81D ... tiling clone,   809/818
(98 %)
22 diff
(97.4 %id)
TI_44166080   SOX2OT.b 297 to 1109 119 to 927 V77G S78F F79I K80Q I81D ...     809/931
(86 %)
22 diff
(97.7 %id)
DA208447 brain SOX2OT.b 298 to 870 2 to 574 exact capped   573/573
(100 %)
0 diff
(100 %id)
DB470754 hippocampus SOX2OT.b 302 to 749 1 to 444       444/444
(100 %)
31 diff
(93.1 %id)
DB475443 hippocampus SOX2OT.b 302 to 761 1 to 460       460/460
(100 %)
0 diff
(100 %id)
DA284155 corpus callosum SOX2OT.b 316 to 862 17 to 563 exact capped   547/547
(100 %)
0 diff
(100 %id)
DA286657 corpus callosum SOX2OT.b 316 to 875 8 to 568 exact capped   561/561
(100 %)
1 diff
(99.9 %id)
DA349471 substantia nigra SOX2OT.b 321 to 878 2 to 559 exact capped   558/558
(100 %)
2 diff
(99.7 %id)
DA167144 amygdala SOX2OT.b 323 to 802 2 to 481   capped   480/480
(100 %)
3 diff
(99.4 %id)
DA131865 alzheimer cortex SOX2OT.b 333 to 872 2 to 542 exact capped   541/541
(100 %)
5 diff
(99.1 %id)
BI601220 brain, hypothalamus SOX2OT.b 334 to 1039 1 to 707 G3A L4D T5K G7L S8R ...     707/709
(99 %)
11 diff
(98.5 %id)
BI601514 brain, hypothalamus SOX2OT.b 334 to 1185 1 to 860 G3A L4D T5K G7L S8R ... tiling clone,   860/861
(99 %)
21 diff
(97.6 %id)
BI668091 brain, hypothalamus SOX2OT.b 334 to 1155 1 to 823 L2A G3D L4K T5R R6L ... tiling clone,   823/823
(100 %)
22 diff
(97.4 %id)
DA148233 amygdala SOX2OT.b 335 to 912 2 to 581 exact capped   580/580
(100 %)
2 diff
(99.7 %id)
DA359248 subthalamic nucleus SOX2OT.b 335 to 889 2 to 557 exact capped   556/556
(100 %)
1 diff
(99.9 %id)
DA362189 subthalamic nucleus SOX2OT.b 335 to 795 2 to 464   capped   463/463
(100 %)
7 diff
(98.5 %id)
DA369506 subthalamic nucleus SOX2OT.b 335 to 905 2 to 573 exact capped   572/572
(100 %)
1 diff
(99.9 %id)
DA166593 amygdala SOX2OT.b 337 to 880 2 to 549 L62F K64E K65E T66N I67K ... capped   548/548
(100 %)
8 diff
(98.6 %id)
DB474842 hippocampus SOX2OT.b 337 to 851 1 to 515 exact     515/515
(100 %)
2 diff
(99.7 %id)
DB482709 hippocampus SOX2OT.b 337 to 837 1 to 501 exact     501/501
(100 %)
2 diff
(99.7 %id)
DA132079 alzheimer cortex SOX2OT.b 338 to 892 2 to 557 exact capped   556/556
(100 %)
2 diff
(99.7 %id)
DA277074 corpus callosum SOX2OT.b 338 to 913 2 to 578 exact capped   577/577
(100 %)
2 diff
(99.7 %id)
DA290999 hippocampus SOX2OT.b 338 to 911 2 to 575 exact capped   574/574
(100 %)
1 diff
(99.9 %id)
DA351387 substantia nigra SOX2OT.b 338 to 926 2 to 591 exact capped   590/590
(100 %)
3 diff
(99.5 %id)
DA354554 substantia nigra SOX2OT.b 338 to 919 2 to 583 exact capped   582/582
(100 %)
2 diff
(99.7 %id)
DB468110 hippocampus SOX2OT.b 338 to 764 1 to 427       427/436
(97 %)
20 diff
(95.5 %id)
DA165213 amygdala SOX2OT.b 339 to 888 13 to 563 exact capped   551/562
(98 %)
6 diff
(99.0 %id)
DA263226 caudate nucleus SOX2OT.b 339 to 888 2 to 553 exact capped   552/552
(100 %)
2 diff
(99.7 %id)
DA303463 hippocampus SOX2OT.b 339 to 924 2 to 588 exact capped   587/587
(100 %)
3 diff
(99.5 %id)
DA346811 substantia nigra SOX2OT.b 339 to 893 2 to 557 exact capped   556/556
(100 %)
3 diff
(99.5 %id)
DT219358 brain SOX2OT.b 339 to 1005 1 to 667 exact     667/667
(100 %)
1 diff
(99.9 %id)
DB505934 hypothalamus SOX2OT.b 339 to 845 1 to 508 S10N     508/508
(100 %)
2 diff
(99.7 %id)
BG701492 brain, hippocampus SOX2OT.b 339 to 1159 8 to 840 exact tiling clone,   833/847
(98 %)
25 diff
(97.1 %id)
TI_45211249   SOX2OT.b 339 to 1039 146 to 847 G3A L4D T5K G7L S8R ...     702/849
(82 %)
10 diff
(98.9 %id)
TI_45215363   SOX2OT.b 339 to 1185 86 to 940 G3A L4D T5K G7L S8R ...     855/941
(90 %)
22 diff
(97.7 %id)
TI_44346500   SOX2OT.b 339 to 1155 86 to 903 L2A G3D L4K T5R R6L ...     818/903
(90 %)
19 diff
(97.9 %id)
DB180169 kidney, tumor tissue SOX2OT.b 339 to 891 2 to 555 exact capped   554/554
(100 %)
1 diff
(99.9 %id)
DA134901 alzheimer cortex SOX2OT.b 340 to 893 2 to 556 exact capped   555/555
(100 %)
1 diff
(99.9 %id)
DA136099 alzheimer cortex SOX2OT.b 340 to 972 2 to 635 exact capped   634/634
(100 %)
2 diff
(99.7 %id)
DA140451 alzheimer cortex SOX2OT.b 340 to 665 2 to 327   capped   326/326
(100 %)
0 diff
(100 %id)
DA159447 amygdala SOX2OT.b 340 to 908 2 to 571 exact capped   570/570
(100 %)
1 diff
(99.9 %id)
DA167857 amygdala SOX2OT.b 340 to 915 2 to 578 exact capped   577/577
(100 %)
1 diff
(99.9 %id)
DA180052 amygdala SOX2OT.b 340 to 907 2 to 570 exact capped   569/569
(100 %)
1 diff
(99.9 %id)
DA233431 brain SOX2OT.b 340 to 914 2 to 577 exact capped   576/576
(100 %)
2 diff
(99.7 %id)
DA248954 brain SOX2OT.b 340 to 916 2 to 579 exact capped   578/578
(100 %)
2 diff
(99.7 %id)
DA257051 caudate nucleus SOX2OT.b 340 to 802 2 to 464   capped   463/463
(100 %)
0 diff
(100 %id)
DA259497 caudate nucleus SOX2OT.b 340 to 802 2 to 464   capped   463/463
(100 %)
0 diff
(100 %id)
DA264487 caudate nucleus SOX2OT.b 340 to 802 2 to 465   capped   464/464
(100 %)
1 diff
(99.8 %id)
DA268973 caudate nucleus SOX2OT.b 340 to 894 2 to 557 Y18H capped   556/556
(100 %)
2 diff
(99.7 %id)
DA272665 caudate nucleus SOX2OT.b 340 to 871 2 to 533 exact capped   532/532
(100 %)
1 diff
(99.9 %id)
DA277970 corpus callosum SOX2OT.b 340 to 862 2 to 525 R82X capped   524/524
(100 %)
2 diff
(99.7 %id)
DA278267 corpus callosum SOX2OT.b 340 to 896 2 to 559 exact capped   558/558
(100 %)
1 diff
(99.9 %id)
DA279068 corpus callosum SOX2OT.b 340 to 904 2 to 567 exact capped   566/566
(100 %)
1 diff
(99.9 %id)
DA285311 corpus callosum SOX2OT.b 340 to 876 2 to 539 exact capped   538/538
(100 %)
1 diff
(99.9 %id)
DA286610 corpus callosum SOX2OT.b 340 to 914 2 to 577 exact capped   576/576
(100 %)
1 diff
(99.9 %id)
DA290114 hippocampus SOX2OT.b 340 to 789 2 to 451   capped   450/450
(100 %)
1 diff
(99.8 %id)
DA342800 substantia nigra SOX2OT.b 340 to 915 2 to 577 exact capped   576/576
(100 %)
1 diff
(99.9 %id)
DA345402 substantia nigra SOX2OT.b 340 to 901 2 to 564 exact capped   563/563
(100 %)
1 diff
(99.9 %id)
DA350278 substantia nigra SOX2OT.b 340 to 862 2 to 524 exact capped   523/523
(100 %)
0 diff
(100 %id)
DA352576 substantia nigra SOX2OT.b 340 to 919 2 to 581 S10N capped   580/580
(100 %)
1 diff
(99.9 %id)
DA357302 subthalamic nucleus SOX2OT.b 340 to 889 2 to 551 N27S capped   550/550
(100 %)
1 diff
(99.9 %id)
DA362148 subthalamic nucleus SOX2OT.b 340 to 916 2 to 578 exact capped   577/577
(100 %)
0 diff
(100 %id)
DA365849 subthalamic nucleus SOX2OT.b 340 to 848 2 to 511 R74X capped   510/510
(100 %)
2 diff
(99.7 %id)
DA367963 subthalamic nucleus SOX2OT.b 340 to 897 2 to 559 exact capped   558/558
(100 %)
0 diff
(100 %id)
DA406068 thalamus SOX2OT.b 340 to 923 2 to 586 exact capped   585/585
(100 %)
1 diff
(99.9 %id)
DA412243 thalamus SOX2OT.b 340 to 919 2 to 581 exact capped   580/580
(100 %)
0 diff
(100 %id)
DB169465 kidney, tumor tissue SOX2OT.b 340 to 928 2 to 591 exact capped   590/590
(100 %)
1 diff
(99.9 %id)
DB175041 kidney, tumor tissue SOX2OT.b 340 to 899 2 to 562 I81V capped   561/561
(100 %)
2 diff
(99.7 %id)
DB175631 kidney, tumor tissue SOX2OT.b 340 to 902 2 to 564 exact capped   563/563
(100 %)
1 diff
(99.9 %id)
DA270048 caudate nucleus SOX2OT.b 341 to 905 2 to 567 exact capped   566/566
(100 %)
1 diff
(99.9 %id)
DA368208 subthalamic nucleus SOX2OT.b 341 to 924 2 to 585 exact capped   584/584
(100 %)
0 diff
(100 %id)
DB480681 hippocampus SOX2OT.b 342 to 811 1 to 470 T59I     470/470
(100 %)
1 diff
(99.8 %id)
DA410724 thalamus SOX2OT.b 345 to 802 2 to 461   capped   460/460
(100 %)
2 diff
(99.6 %id)
AL598157   SOX2OT.c 1 to 556 1 to 556 C42R tiling clone,   556/566
(98 %)
3 diff
(99.5 %id)
DA515381 brain SOX2OT.d 1 to 559 2 to 561   tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
BC041898 testis SOX2OT.d 425 to 2367 1 to 1943 exact tiling clone, available from MGC, AAA   1943/1943
(100 %)
1 diff
(100.0 %id)
DA140256 alzheimer cortex SOX2OT.d 692 to 1249 2 to 560 exact capped   559/559
(100 %)
1 diff
(99.9 %id)
DA278319 corpus callosum SOX2OT.d 693 to 1255 2 to 565 exact capped   564/564
(100 %)
1 diff
(99.9 %id)
DA369884 subthalamic nucleus SOX2OT.d 693 to 1243 2 to 553 exact capped   552/552
(100 %)
1 diff
(99.9 %id)
DA283659 corpus callosum SOX2OT.d 701 to 1280 2 to 582 exact capped   581/581
(100 %)
1 diff
(99.9 %id)
BF528977 anaplastic oligodendroglioma with 1p/19qloss, brain SOX2OT.d 705 to 1465 1 to 800 H12Q V13R L14S S15F L16A ... available from MGC,   800/822
(97 %)
52 diff
(93.7 %id)
DA270443 caudate nucleus SOX2OT.d 709 to 1282 2 to 576 exact capped   575/576
(99 %)
2 diff
(99.7 %id)
DA365386 subthalamic nucleus SOX2OT.d 709 to 1272 2 to 568 exact capped   567/567
(100 %)
3 diff
(99.5 %id)
DA343465 substantia nigra SOX2OT.d 711 to 1283 2 to 575 exact capped   574/574
(100 %)
2 diff
(99.7 %id)
DA142203 alzheimer cortex SOX2OT.d 716 to 1267 2 to 553 exact capped   552/552
(100 %)
0 diff
(100 %id)
DA275725 corpus callosum SOX2OT.d 716 to 1270 2 to 556 exact capped   555/555
(100 %)
0 diff
(100 %id)
DA357231 subthalamic nucleus SOX2OT.d 716 to 1280 2 to 566 exact tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
DA154575 amygdala SOX2OT.d 717 to 1277 2 to 562 exact capped   561/561
(100 %)
0 diff
(100 %id)
DA298250 hippocampus SOX2OT.d 717 to 1277 2 to 563 exact capped   562/562
(100 %)
1 diff
(99.9 %id)
BI601716 brain, hypothalamus SOX2OT.d 795 to 1392 143 to 752 Y18D I21S K22Q L23T L24A ...     610/753
(81 %)
28 diff
(96.3 %id)
TI_45214772   SOX2OT.d 795 to 1392 227 to 836 Y18D I21S K22Q L23T L24A ...     610/837
(72 %)
28 diff
(96.7 %id)
DA254884 caudate nucleus SOX2OT.d 871 to 1430 2 to 561 S10N capped   560/560
(100 %)
2 diff
(99.7 %id)
DA269055 caudate nucleus SOX2OT.d 1028 to 1565 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
N74615 liver and spleen SOX2OT.d 1093 to 1532 441 to 1       441/491
(89 %)
2 diff
(99.6 %id)
CA314424 Human Lung Epithelial cells, lung SOX2OT.d 1095 to 1777 701 to 19   AAA   683/698
(97 %)
0 diff
(100 %id)
BE767297 nervous_tumor SOX2OT.d 1207 to 1739 539 to 5       535/554
(96 %)
0 diff
(100 %id)
BX423293 brain, fetal brain SOX2OT.d 1335 to 2351 1021 to 1       1021/1090
(93 %)
16 diff
(98.6 %id)
BX508181   SOX2OT.d 1353 to 1806 1 to 455       455/457
(99 %)
2 diff
(99.6 %id)
AA663718 schizophrenic brain S-11 frontal lobe SOX2OT.d 1444 to 1845 403 to 2       402/403
(99 %)
0 diff
(100 %id)
DA177152 amygdala SOX2OT.d 1793 to 2342 2 to 557   capped   556/556
(100 %)
5 diff
(99.2 %id)
BX454810 brain, fetal brain SOX2OT.d 1814 to 2359 540 to 1       540/540
(100 %)
7 diff
(98.8 %id)
DA269719 caudate nucleus SOX2OT.d 1989 to 2549 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
BE972288 testis SOX2OT.d 2012 to 2674 1 to 659   tiling clone,   659/661
(99 %)
28 diff
(95.8 %id)
DB570145 hypothalamus SOX2OT.d 2040 to 2540 1 to 501     Submitted on the opposite strand 501/501
(100 %)
2 diff
(99.7 %id)
DB539105 hippocampus SOX2OT.d 2100 to 2540 1 to 443     Submitted on the opposite strand 443/443
(100 %)
2 diff
(99.6 %id)
DB539423 hippocampus SOX2OT.d 2101 to 2540 1 to 439     Submitted on the opposite strand 439/439
(100 %)
7 diff
(98.5 %id)
T23513   SOX2OT.d 2101 to 2366 269 to 4       266/269
(98 %)
0 diff
(100 %id)
DB539090 hippocampus SOX2OT.d 2104 to 2540 1 to 438     Submitted on the opposite strand 438/438
(100 %)
1 diff
(99.8 %id)
DB533494 hippocampus SOX2OT.d 2127 to 2540 1 to 415     Submitted on the opposite strand 415/415
(100 %)
2 diff
(99.6 %id)
DB544266 hippocampus SOX2OT.d 2180 to 2540 1 to 362     Submitted on the opposite strand 362/362
(100 %)
2 diff
(99.5 %id)
DB316776 brain SOX2OT.d 2204 to 2742 540 to 1   tiling clone,   540/541
(99 %)
1 diff
(99.9 %id)
NR_004053.2   SOX2OT.e 1 to 2493 1 to 2493 exact RefSeq, tiling clone, AAA Possibly primed on the genome, locally A rich (17/21 A in genome downstream of last aligned base) 2493/2493
(100 %)
0 diff
(100 %id)
AK022826   SOX2OT.e 184 to 2493 1 to 2309 I21T available from FLJ, AAA Possibly primed on the genome, locally A rich (17/21 A in genome downstream of last aligned base) 2309/2309
(100 %)
4 diff
(99.9 %id)
AU127535   SOX2OT.e 185 to 845 2 to 660   capped   659/818
(80 %)
7 diff
(99.2 %id)
BC016393 Brain, anaplastic oligodendroglioma with1p/19q loss SOX2OT.e 455 to 2493 1 to 2041 exact available from MGC, AAA Possibly primed on the genome, locally A rich (17/21 A in genome downstream of last aligned base) 2041/2041
(100 %)
1 diff
(100.0 %id)
BX410064 brain, fetal brain SOX2OT.e 1353 to 2218 1 to 859       859/908
(94 %)
6 diff
(99.4 %id)
AW026485 brain, glioblastoma (pooled) SOX2OT.e 1596 to 2118 529 to 2       528/529
(99 %)
0 diff
(100 %id)
BX454790 brain, fetal brain SOX2OT.e 1606 to 2119 520 to 7       514/520
(98 %)
0 diff
(100 %id)
DB549733 hippocampus SOX2OT.e 1651 to 2121 1 to 471     Submitted on the opposite strand 471/471
(100 %)
2 diff
(99.6 %id)
AI497629 anaplastic oligodendroglioma, brain SOX2OT.e 1657 to 2112 489 to 34   AAA   456/456
(100 %)
2 diff
(99.6 %id)
DB566303 hypothalamus SOX2OT.e 1663 to 2119 1 to 457     Submitted on the opposite strand 457/459
(99 %)
1 diff
(99.8 %id)
BE935863 nervous_normal SOX2OT.e 1664 to 1977 11 to 325       315/334
(94 %)
30 diff
(91.1 %id)
DB565123 hypothalamus SOX2OT.e 1667 to 2119 1 to 453     Submitted on the opposite strand 453/455
(99 %)
1 diff
(99.8 %id)
AU150100   SOX2OT.e 1963 to 2508 542 to 2       541/556
(97 %)
0 diff
(100 %id)
DA735954   SOX2OT.f 1 to 888 2 to 886 R29X tiling clone, capped   885/885
(100 %)
6 diff
(99.4 %id)
Z44703 brain, total brain SOX2OT.f 300 to 608 1 to 309 exact     309/309
(100 %)
1 diff
(99.7 %id)
Z40539 brain, total brain SOX2OT.f 1589 to 1851 263 to 1   tiling clone,   263/263
(100 %)
1 diff
(99.7 %id)
AU153060   SOX2OT.f 1712 to 2235 524 to 1   tiling clone,   524/531
(98 %)
16 diff
(97.0 %id)
DB535293 hippocampus SOX2OT.g-u 1 to 429 1 to 431   tiling clone, Submitted on the opposite strand 431/432
(99 %)
8 diff
(98.2 %id)
DT216636 brain SOX2OT.g-u 61 to 685 1 to 622   tiling clone,   622/622
(100 %)
3 diff
(99.6 %id)
R55368 whole brain SOX2OT.g-u 450 to 861 1 to 427   tiling clone, Submitted on the opposite strand 427/437
(97 %)
17 diff
(96.2 %id)
AW905812 nervous_normal SOX2OT.g-u 498 to 749 262 to 9       254/263
(96 %)
0 diff
(100 %id)
CF455658 peripheral nervous system SOX2OT.g-u 533 to 1506 36 to 1011 exact tiling clone,   976/1020
(95 %)
5 diff
(99.6 %id)
BF946788 nervous_normal SOX2OT.g-u 619 to 840 8 to 228       221/234
(94 %)
6 diff
(97.5 %id)
CF456582 peripheral nervous system SOX2OT.g-u 653 to 1393 27 to 766 exact     740/766
(96 %)
6 diff
(99.3 %id)
BI037596 nervous_tumor SOX2OT.g-u 759 to 1253 21 to 513       493/513
(96 %)
6 diff
(98.9 %id)
BF935712 nervous_tumor SOX2OT.g-u 763 to 1271 517 to 9     Submitted on the opposite strand 509/517
(98 %)
0 diff
(100 %id)
BM709735 eye, Retina Foveal and Macular SOX2OT.g-u 797 to 1375 1 to 579       579/579
(100 %)
0 diff
(100 %id)
DB549451 hippocampus SOX2OT.g-u 843 to 1277 1 to 435     Submitted on the opposite strand 435/435
(100 %)
1 diff
(99.8 %id)
AW026426 brain, glioblastoma (pooled) SOX2OT.g-u 964 to 1507 546 to 1       546/546
(100 %)
5 diff
(99.1 %id)
AI912222 carcinoid, lung SOX2OT.g-u 967 to 1509 543 to 1       543/543
(100 %)
1 diff
(99.9 %id)
BF438550 brain, glioblastoma (pooled) SOX2OT.g-u 997 to 1507 511 to 1       511/511
(100 %)
1 diff
(99.9 %id)
BX095976 whole brain SOX2OT.g-u 1002 to 1509 521 to 15   AAA Possibly primed on the genome, locally A rich (17/21 A in genome downstream of last aligned base) 507/507
(100 %)
1 diff
(99.9 %id)
DB551560 hippocampus SOX2OT.g-u 1019 to 1514 1 to 496     Submitted on the opposite strand 496/496
(100 %)
1 diff
(99.8 %id)
DB577234 hypothalamus SOX2OT.g-u 1029 to 1509 1 to 480     Submitted on the opposite strand 480/480
(100 %)
9 diff
(98.2 %id)
DB543679 hippocampus SOX2OT.g-u 1059 to 1514 1 to 456     Submitted on the opposite strand 456/456
(100 %)
0 diff
(100 %id)
BF594264 brain, glioblastoma (pooled) SOX2OT.g-u 1063 to 1507 445 to 1       445/445
(100 %)
0 diff
(100 %id)
AI056507 brain, glioblastoma (pooled) SOX2OT.g-u 1064 to 1509 463 to 18   AAA Possibly primed on the genome, locally A rich (17/21 A in genome downstream of last aligned base) 446/446
(100 %)
0 diff
(100 %id)
DB544818 hippocampus SOX2OT.g-u 1077 to 1514 1 to 438     Submitted on the opposite strand 438/438
(100 %)
0 diff
(100 %id)
AI051133 brain, glioblastoma (pooled) SOX2OT.g-u 1086 to 1517 447 to 16   tiling clone, AAA Possibly primed on the genome, locally A rich (17/21 A in genome downstream of last aligned base) 432/432
(100 %)
0 diff
(100 %id)
R55605 whole brain SOX2OT.g-u 1108 to 1507 404 to 1     Submitted on the opposite strand 404/409
(98 %)
4 diff
(99.1 %id)
DA268964 caudate nucleus SOX2OT.h 1 to 409 2 to 410 S34X capped   409/411
(99 %)
0 diff
(100 %id)
DA277929 corpus callosum SOX2OT.h 1 to 559 2 to 560 exact tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
DA406378 thalamus SOX2OT.h 13 to 437 2 to 427 exact capped   426/431
(98 %)
3 diff
(99.4 %id)
TI_57220461   SOX2OT.h 21 to 895 35 to 918 exact     884/926
(95 %)
37 diff
(96.1 %id)
BI757585 brain SOX2OT.h 22 to 895 1 to 883 exact     883/891
(99 %)
33 diff
(96.3 %id)
DB170935 kidney, tumor tissue SOX2OT.h 26 to 596 2 to 572 exact capped   571/571
(100 %)
1 diff
(99.9 %id)
BF347925 anaplastic oligodendroglioma with 1p/19qloss, brain SOX2OT.h 36 to 646 1 to 613 exact     613/616
(99 %)
15 diff
(97.6 %id)
DA136383 alzheimer cortex SOX2OT.h 37 to 581 2 to 546 K26R capped   545/545
(100 %)
1 diff
(99.9 %id)
DA302115 hippocampus SOX2OT.h 41 to 510 2 to 472 exact capped   471/471
(100 %)
2 diff
(99.6 %id)
DB499042 hypothalamus SOX2OT.h 49 to 390 1 to 342       342/394
(86 %)
2 diff
(99.5 %id)
DA265083 caudate nucleus SOX2OT.h 59 to 586 9 to 537 exact capped   529/529
(100 %)
2 diff
(99.7 %id)
DA282731 corpus callosum SOX2OT.h 59 to 603 14 to 559 A8C S9K S10L F11L N12Q ... capped   546/546
(100 %)
2 diff
(99.7 %id)
DB175439 kidney, tumor tissue SOX2OT.h 59 to 638 10 to 590 exact capped   581/581
(100 %)
1 diff
(99.9 %id)
DA532516 brain SOX2OT.h 62 to 556 2 to 496 exact capped   495/495
(100 %)
4 diff
(99.2 %id)
DB173817 kidney, tumor tissue SOX2OT.h 65 to 633 2 to 571 exact capped   570/570
(100 %)
2 diff
(99.7 %id)
DA418095 thalamus SOX2OT.h 77 to 620 7 to 550 exact capped   544/549
(99 %)
6 diff
(99.0 %id)
BG715434 brain, hypothalamus SOX2OT.h 77 to 697 1 to 621 exact     621/621
(100 %)
6 diff
(99.1 %id)
DB476009 hippocampus SOX2OT.h 80 to 308 1 to 229       229/230
(99 %)
2 diff
(99.2 %id)
BM725940 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid SOX2OT.h 80 to 527 1 to 448 exact fully sequenced,   448/448
(100 %)
0 diff
(100 %id)
DA153050 amygdala SOX2OT.h 81 to 652 2 to 574 exact capped   573/573
(100 %)
3 diff
(99.5 %id)
DA160000 amygdala SOX2OT.h 81 to 637 2 to 558 exact capped   557/557
(100 %)
2 diff
(99.7 %id)
DA278757 corpus callosum SOX2OT.h 81 to 627 2 to 549 exact capped   548/548
(100 %)
3 diff
(99.5 %id)
DA284596 corpus callosum SOX2OT.h 81 to 586 2 to 509 exact capped   508/508
(100 %)
3 diff
(99.5 %id)
DA260132 caudate nucleus SOX2OT.h 82 to 643 2 to 565 exact capped   564/564
(100 %)
4 diff
(99.3 %id)
DA278235 corpus callosum SOX2OT.h 82 to 390 217 to 525   capped   309/544
(56 %)
1 diff
(99.9 %id)
DA311296 hippocampus SOX2OT.h 82 to 627 2 to 548 A8C S9K S10L F11L N12Q ... capped   547/547
(100 %)
1 diff
(99.9 %id)
DA129372 alzheimer cortex SOX2OT.h 83 to 650 2 to 569 exact capped   568/568
(100 %)
0 diff
(100 %id)
DA131719 alzheimer cortex SOX2OT.h 83 to 621 2 to 541 exact capped   540/540
(100 %)
1 diff
(99.9 %id)
DA132672 alzheimer cortex SOX2OT.h 83 to 630 2 to 550 exact capped   549/549
(100 %)
1 diff
(99.9 %id)
DA133120 alzheimer cortex SOX2OT.h 83 to 628 2 to 548 A8C S9K S10L F11L N12Q ... capped   547/547
(100 %)
1 diff
(99.9 %id)
DA133155 alzheimer cortex SOX2OT.h 83 to 627 2 to 547 exact capped   546/546
(100 %)
1 diff
(99.9 %id)
DA139532 alzheimer cortex SOX2OT.h 83 to 706 2 to 625 exact capped   624/624
(100 %)
0 diff
(100 %id)
DA142762 alzheimer cortex SOX2OT.h 83 to 639 2 to 559 A8C S9K S10L F11L N12Q ... capped   558/558
(100 %)
1 diff
(99.9 %id)
DA145889 amygdala SOX2OT.h 83 to 645 2 to 567 A8C S9K S10L F11P N12S ... capped   566/566
(100 %)
3 diff
(99.5 %id)
DA166395 amygdala SOX2OT.h 83 to 607 2 to 526 exact capped   525/525
(100 %)
0 diff
(100 %id)
DA168440 amygdala SOX2OT.h 83 to 669 2 to 589 exact capped   588/588
(100 %)
1 diff
(99.9 %id)
DA179672 amygdala SOX2OT.h 83 to 604 2 to 524 exact capped   523/523
(100 %)
2 diff
(99.7 %id)
DA195694 amygdala SOX2OT.h 83 to 651 2 to 571 A8C S9K S10L F11L N12Q ... capped   570/570
(100 %)
2 diff
(99.7 %id)
DA264513 caudate nucleus SOX2OT.h 83 to 637 2 to 557 exact capped   556/556
(100 %)
2 diff
(99.7 %id)
DA273021 caudate nucleus SOX2OT.h 83 to 660 2 to 580 exact capped   579/579
(100 %)
1 diff
(99.9 %id)
DA274461 corpus callosum SOX2OT.h 83 to 654 2 to 574 exact capped   573/573
(100 %)
1 diff
(99.9 %id)
DA279363 corpus callosum SOX2OT.h 83 to 666 2 to 585 exact capped   584/584
(100 %)
1 diff
(99.9 %id)
DA280038 corpus callosum SOX2OT.h 83 to 649 2 to 570 K2E D3G E4L T7E A8L ... capped   569/569
(100 %)
2 diff
(99.7 %id)
DA281737 corpus callosum SOX2OT.h 83 to 649 2 to 569 exact capped   568/568
(100 %)
1 diff
(99.9 %id)
DA284362 corpus callosum SOX2OT.h 83 to 571 2 to 491 exact capped   490/490
(100 %)
1 diff
(99.8 %id)
DA284723 corpus callosum SOX2OT.h 83 to 632 2 to 552 exact capped   551/551
(100 %)
1 diff
(99.9 %id)
DA284814 corpus callosum SOX2OT.h 83 to 625 2 to 544 exact capped   543/543
(100 %)
1 diff
(99.9 %id)
DA286721 corpus callosum SOX2OT.h 83 to 631 2 to 551 exact capped   550/550
(100 %)
1 diff
(99.9 %id)
DA287748 corpus callosum SOX2OT.h 83 to 632 2 to 552 exact capped   551/551
(100 %)
1 diff
(99.9 %id)
DA350535 substantia nigra SOX2OT.h 83 to 671 2 to 590 exact capped   589/589
(100 %)
0 diff
(100 %id)
DA352078 substantia nigra SOX2OT.h 83 to 640 2 to 559 exact capped   558/558
(100 %)
1 diff
(99.9 %id)
DA355176 subthalamic nucleus SOX2OT.h 83 to 628 2 to 548 A8C S9K S10L F11L N12Q ... capped   547/547
(100 %)
2 diff
(99.7 %id)
DA358441 subthalamic nucleus SOX2OT.h 83 to 612 16 to 545 exact capped   530/530
(100 %)
0 diff
(100 %id)
DA358810 subthalamic nucleus SOX2OT.h 83 to 658 2 to 578 A8C S9K S10L F11L N12Q ... capped   577/577
(100 %)
3 diff
(99.5 %id)
DA362437 subthalamic nucleus SOX2OT.h 83 to 551 2 to 471 exact capped   470/470
(100 %)
1 diff
(99.8 %id)
DA362847 subthalamic nucleus SOX2OT.h 83 to 644 2 to 564 A8C S9K S10L F11L N12Q ... capped   563/563
(100 %)
3 diff
(99.5 %id)
DA363633 subthalamic nucleus SOX2OT.h 83 to 643 13 to 574 exact capped   562/562
(100 %)
1 diff
(99.9 %id)
DA406174 thalamus SOX2OT.h 83 to 632 2 to 552 exact capped   551/551
(100 %)
1 diff
(99.9 %id)
DA408016 thalamus SOX2OT.h 83 to 626 2 to 545 exact capped   544/544
(100 %)
0 diff
(100 %id)
DA531399 brain SOX2OT.h 83 to 698 2 to 618 A8C S9K S10L F11L N12Q ... capped   617/617
(100 %)
1 diff
(99.9 %id)
DB172455 kidney, tumor tissue SOX2OT.h 83 to 642 2 to 562 A8C S9K S10L F11L N12Q ... capped   561/561
(100 %)
1 diff
(99.9 %id)
DB178263 kidney, tumor tissue SOX2OT.h 83 to 636 2 to 555 exact capped   554/554
(100 %)
0 diff
(100 %id)
DA104936 cerebellum SOX2OT.h 84 to 670 2 to 589 exact capped   588/588
(100 %)
1 diff
(99.9 %id)
DA189377 amygdala SOX2OT.h 84 to 677 2 to 596 A8C S9K S10L F11L N12Q ... capped   595/595
(100 %)
2 diff
(99.7 %id)
DA529805 brain SOX2OT.h 87 to 682 12 to 608 exact capped   597/597
(100 %)
3 diff
(99.5 %id)
DA201533 brain SOX2OT.h 89 to 661 2 to 575 A8C S9K S10L F11L N12Q ... capped   574/574
(100 %)
1 diff
(99.9 %id)
DA270634 caudate nucleus SOX2OT.h 92 to 634 2 to 545 A8C S9K S10L F11L N12Q ... capped   544/544
(100 %)
1 diff
(99.9 %id)
BI549819 brain, hippocampus SOX2OT.h 92 to 841 1 to 749 exact     749/795
(94 %)
14 diff
(98.3 %id)
DA134835 alzheimer cortex SOX2OT.h 93 to 660 2 to 570 A8C S9K S10L F11L N12Q ... capped   569/569
(100 %)
1 diff
(99.9 %id)
DA181278 amygdala SOX2OT.h 95 to 661 2 to 568 exact capped   567/567
(100 %)
0 diff
(100 %id)
TI_44171288   SOX2OT.h 98 to 841 91 to 833 exact     743/943
(78 %)
14 diff
(98.6 %id)
AV729054 hypothalamus SOX2OT.h 104 to 567 1 to 464 A36T     464/464
(100 %)
8 diff
(98.3 %id)
BX442540 brain, fetal brain SOX2OT.h 105 to 1145 1 to 1038 exact tiling clone,   1038/1038
(100 %)
11 diff
(99.0 %id)
DB480926 hippocampus SOX2OT.h 113 to 587 1 to 475 exact     475/475
(100 %)
1 diff
(99.8 %id)
DB494090 hypothalamus SOX2OT.h 113 to 643 1 to 531 exact     531/531
(100 %)
1 diff
(99.9 %id)
DB495259 hypothalamus SOX2OT.h 113 to 602 1 to 490 exact     490/490
(100 %)
1 diff
(99.8 %id)
DA345227 substantia nigra SOX2OT.h 114 to 677 2 to 566 A8C S9K S10L F11L N12Q ... capped   565/565
(100 %)
2 diff
(99.7 %id)
DA261948 caudate nucleus SOX2OT.h 119 to 672 2 to 556 W13X F14V C15L P16S V17G ... capped   555/555
(100 %)
1 diff
(99.9 %id)
DA277798 corpus callosum SOX2OT.h 122 to 600 12 to 491 A8C S9K S10L F11L N12Q ... capped   480/480
(100 %)
1 diff
(99.8 %id)
BX423294 brain, fetal brain SOX2OT.h 123 to 1099 1 to 975 A22X A24X D25X tiling clone,   975/975
(100 %)
13 diff
(98.7 %id)
BX459910 brain, fetal brain SOX2OT.h 123 to 970 1 to 848 exact     848/848
(100 %)
0 diff
(100 %id)
BM678045 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid SOX2OT.h 497 to 845 367 to 19   fully sequenced, AAA   349/349
(100 %)
1 diff
(99.8 %id)
BQ429228 testis SOX2OT.i 1 to 818 1 to 837 exact tiling clone,   837/866
(96 %)
40 diff
(95.4 %id)
FN158187 breast carcinoma SOX2OT.j 1 to 103 1 to 101   tiling clone,   101/101
(100 %)
4 diff
(96.1 %id)
DA366949 subthalamic nucleus SOX2OT.j 38 to 518 2 to 481   tiling clone, capped   480/535
(89 %)
3 diff
(99.5 %id)
DA250340 caudate nucleus SOX2OT.j 68 to 625 2 to 559 exact tiling clone, capped   558/559
(99 %)
1 diff
(99.9 %id)
DA308672 hippocampus SOX2OT.j 68 to 518 2 to 452   capped   451/576
(78 %)
1 diff
(99.9 %id)
BI600313 brain, hypothalamus SOX2OT.j 204 to 804 1 to 602 exact     602/744
(80 %)
4 diff
(99.5 %id)
TI_45215303   SOX2OT.j 204 to 804 83 to 684 exact     602/826
(72 %)
7 diff
(99.2 %id)
DA485580 brain SOX2OT.j 229 to 804 2 to 577 exact capped   576/579
(99 %)
2 diff
(99.7 %id)
DA731984   SOX2OT.j 229 to 699 2 to 467 exact capped   466/466
(100 %)
8 diff
(98.3 %id)
DB170062 kidney, tumor tissue SOX2OT.j 234 to 804 2 to 572 exact tiling clone, capped   571/586
(97 %)
0 diff
(100 %id)
DA175606 amygdala SOX2OT.j 290 to 804 2 to 516 exact capped   515/525
(98 %)
1 diff
(99.9 %id)
DA353700 substantia nigra SOX2OT.j 291 to 804 2 to 515 exact capped   514/555
(92 %)
1 diff
(99.9 %id)
BX110135 anaplastic oligodendroglioma, brain SOX2OT.j 344 to 804 1 to 461 M4K     461/480
(96 %)
2 diff
(99.6 %id)
BF697244 brain, primitive neuroectoderm SOX2OT.k -8 to 235 2 to 244 D30T Q31R E32N P33Q T34Q ... tiling clone,   712/863
(82 %)
50 diff
(94.3 %id)
TI_44351009   SOX2OT.l 1 to 618 122 to 741 Q2E     620/977
(63 %)
12 diff
(98.8 %id)
BI562593 testis SOX2OT.l 2 to 618 1 to 619 Q2E tiling clone, available from MGC,   619/855
(72 %)
11 diff
(98.8 %id)
BX091073 pooled SOX2OT.l 22 to 264 1 to 243       243/350
(69 %)
5 diff
(98.6 %id)
BI522738 brain SOX2OT.l 55 to 618 201 to 764   tiling clone,   564/883
(63 %)
10 diff
(98.9 %id)
TI_44185627   SOX2OT.l 55 to 618 236 to 799       564/918
(61 %)
5 diff
(99.5 %id)
DA279403 corpus callosum SOX2OT.m 1 to 583 2 to 584 exact tiling clone, capped   583/583
(100 %)
0 diff
(100 %id)
DA366327 subthalamic nucleus SOX2OT.m 24 to 508 2 to 487 exact capped   486/486
(100 %)
1 diff
(99.8 %id)
DA168821 amygdala SOX2OT.n 1 to 577 2 to 578 exact tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
DA133714 alzheimer cortex SOX2OT.o 1 to 559 2 to 560 exact tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
DA310380 hippocampus SOX2OT.p 1 to 471 2 to 472 exact tiling clone, capped   471/560
(84 %)
1 diff
(99.9 %id)
DA281835 corpus callosum SOX2OT.p 194 to 472 219 to 497   capped   279/543
(51 %)
1 diff
(99.9 %id)
DA247194 brain SOX2OT.q 1 to 466 144 to 609 exact tiling clone, capped   467/608
(76 %)
6 diff
(99.1 %id)
AA813589 pooled SOX2OT.r 1 to 450 459 to -4 exact tiling clone,   457/467
(97 %)
4 diff
(99.2 %id)
AA994714 pooled SOX2OT.r 210 to 450 243 to 3       241/318
(75 %)
0 diff
(100 %id)
BF726937 eye, lens SOX2OT.s 1 to 385 1 to 385 exact tiling clone, AAA   385/385
(100 %)
2 diff
(99.5 %id)
AL157425 amygdala Gene SOX2OT, variant not shown       available from DKFZ, AAA This clone was ignored    
DA149786 amygdala Gene SOX2OT, variant not shown       capped      
DA165466 amygdala Gene SOX2OT, variant not shown       capped      
DA266092 caudate nucleus Gene SOX2OT, variant not shown       capped This clone was ignored    
DA310198 hippocampus Gene SOX2OT, variant not shown       capped This clone was ignored    
DB310044 hippocampus Gene SOX2OT, variant not shown         This clone was ignored    
DA339604 hippocampus Gene SOX2OT, variant not shown       capped This clone was ignored    
DB316699 brain Gene SOX2OT, variant not shown              
DA514437 brain Gene SOX2OT, variant not shown       capped      
AV718176 hypothalamus Gene SOX2OT, variant not shown         Suspected internal deletion, this clone was ignored    
AV725391 hypothalamus Gene SOX2OT, variant not shown         Suspected internal deletion, this clone was ignored    
DB172501 kidney, tumor tissue Gene SOX2OT, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes D