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Gene SOX21TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
39 supporting clones for gene SOX21 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM783259 stomach .a 1 to 607 1 to 609   tiling clone,   609/609
(100 %)
1 diff
(99.9 %id)
CX869743 embryonic stem .a 19 to 731 1 to 713       713/713
(100 %)
5 diff
(99.3 %id)
BM544378 brain, hippocampus .a 60 to 829 85 to 866       782/1146
(68 %)
22 diff
(98.1 %id)
AW006079 anaplastic oligodendroglioma, brain .a 176 to 544 369 to 1       369/369
(100 %)
1 diff
(99.8 %id)
BM545252 brain, hippocampus .a 483 to 1033 1 to 553   tiling clone,   553/1134
(48 %)
18 diff
(98.5 %id)
DB479118 hippocampus .a 798 to 1517 1 to 718       718/719
(99 %)
17 diff
(97.7 %id)
CN280956 embryonic stem cells, cell lines H1, H7, andH9 .a 826 to 1155 1 to 330   tiling clone,   330/330
(100 %)
0 diff
(100 %id)
CX869660 embryonic stem .a 928 to 1684 757 to 1   tiling clone,   757/757
(100 %)
2 diff
(99.8 %id)
CX868446 embryonic stem .a 1169 to 1693 530 to 6       525/530
(99 %)
0 diff
(100 %id)
AI816765 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 1192 to 1675 484 to 1       484/484
(100 %)
2 diff
(99.6 %id)
NM_007084.2   .a 1192 to 3695 1 to 2504   RefSeq, AAA   2504/2504
(100 %)
1 diff
(100.0 %id)
AA040785 heart .a 1196 to 1690 504 to 7       498/504
(98 %)
0 diff
(100 %id)
DB493621 hypothalamus .a 1233 to 1746 1 to 514       514/514
(100 %)
2 diff
(99.7 %id)
AI884987 anaplastic oligodendroglioma, brain .a 1237 to 1693 457 to 1       457/457
(100 %)
1 diff
(99.8 %id)
BF940869 brain, oligodendroglioma .a 1251 to 1669 423 to 1       423/423
(100 %)
7 diff
(98.4 %id)
AI569726 anaplastic oligodendroglioma, brain .a 1252 to 1650 399 to 1       399/399
(100 %)
1 diff
(99.8 %id)
BC111584 Synthetic constructs .a 1253 to 2120 11 to 878   tiling clone,   868/892
(97 %)
6 diff
(99.4 %id)
X71136 Spinal cord .a 1311 to 1539 1 to 229       229/229
(100 %)
2 diff
(99.2 %id)
AI869218 anaplastic oligodendroglioma, brain .a 1318 to 1650 334 to 1       334/339
(98 %)
5 diff
(98.6 %id)
X65666 heart muscle .a 1332 to 1493 1 to 162       162/162
(100 %)
1 diff
(99.4 %id)
AI814457 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 1920 to 2470 1 to 551     Submitted on the opposite strand 551/551
(100 %)
0 diff
(100 %id)
AW131757 brain, medulloblastoma .a 1920 to 2427 1 to 508     Submitted on the opposite strand 508/508
(100 %)
0 diff
(100 %id)
AI829948 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 1943 to 2444 1 to 502     Submitted on the opposite strand 502/502
(100 %)
0 diff
(100 %id)
AI422043 brain, glioblastoma (pooled) .a 1961 to 2392 1 to 432     Submitted on the opposite strand 432/432
(100 %)
2 diff
(99.6 %id)
CX870705 embryonic stem .a 1961 to 2712 1 to 752   tiling clone,   752/752
(100 %)
0 diff
(100 %id)
BM783159 stomach .a 2320 to 2818 1 to 499       499/499
(100 %)
0 diff
(100 %id)
CN295431 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2468 to 3115 1 to 648       648/648
(100 %)
0 diff
(100 %id)
CN295432 embryonic stem cells, DMSO-treated H9 cellline .a 2591 to 3209 1 to 619   tiling clone,   619/619
(100 %)
0 diff
(100 %id)
CR743751 anaplastic oligodendroglioma, brain .a 2601 to 3027 1 to 427       427/427
(100 %)
0 diff
(100 %id)
CX753662 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 2907 to 3687 767 to 1   tiling clone,   767/826
(92 %)
17 diff
(98.0 %id)
DB564694 hypothalamus .a 2982 to 3700 1 to 716     Submitted on the opposite strand 716/716
(100 %)
11 diff
(98.5 %id)
DB547791 hippocampus .a 2986 to 3700 1 to 709     Submitted on the opposite strand 709/709
(100 %)
12 diff
(98.4 %id)
AI201812 anaplastic oligodendroglioma, brain .a 3238 to 3701 464 to 1   tiling clone,   464/464
(100 %)
0 diff
(100 %id)
DB536219 hippocampus .a 3253 to 3700 1 to 448     Submitted on the opposite strand 448/448
(100 %)
6 diff
(98.7 %id)
DB542438 hippocampus .a 3263 to 3700 1 to 439   AAA Submitted on the opposite strand 439/439
(100 %)
3 diff
(99.4 %id)
AI418194 brain, glioblastoma (pooled) .a 3404 to 3700 325 to 29   AAA   297/297
(100 %)
2 diff
(99.4 %id)
DB473668 hippocampus .b-u 1 to 440 1 to 440   tiling clone,   440/440
(100 %)
2 diff
(99.6 %id)
BI917733 brain .b-u 16 to 689 1 to 676 D89E Q90P R91G P103Q tiling clone,   676/677
(99 %)
7 diff
(99.0 %id)
TI_57243848   .b-u 16 to 689 30 to 705 D89E Q90P R91G P103Q     676/706
(95 %)
7 diff
(99.1 %id)
CN280888 embryonic stem cells, cell lines H1, H7, andH9 .b-u 100 to 506 1 to 407       407/407
(100 %)
7 diff
(98.3 %id)
? Gene Summary Gene on genome mRNA:.a, .b-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes