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Gene SOX2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
286 supporting clones for gene SOX2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AI598137 anaplastic oligodendroglioma, brain .a-u -9 to 320 330 to 1       330/330
(100 %)
0 diff
(100 %id)
AW007161 anaplastic oligodendroglioma, brain .a-u -9 to 347 357 to 1       357/357
(100 %)
0 diff
(100 %id)
BF196859 brain, glioblastoma (pooled) .a-u -9 to 347 356 to 1       356/356
(100 %)
1 diff
(99.8 %id)
CN412497 embryonic stem cells, cell lines H1, H7, andH9 .a-u 1 to 274 9 to 282       282/282
(100 %)
0 diff
(100 %id)
CN412503 embryonic stem cells, cell lines H1, H7, andH9 .a-u 1 to 341 8 to 348       348/348
(100 %)
0 diff
(100 %id)
DA737375   .a-u 1 to 546 6 to 552   tiling clone, capped   551/551
(100 %)
1 diff
(99.9 %id)
DA751657   .a-u 1 to 576 2 to 580   capped   579/579
(100 %)
3 diff
(99.5 %id)
BM929439 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a-u 7 to 339 1 to 333       333/333
(100 %)
0 diff
(100 %id)
AI423200 brain, glioblastoma (pooled) .a-u 10 to 347 339 to 1       339/339
(100 %)
1 diff
(99.8 %id)
AI570464 anaplastic oligodendroglioma, brain .a-u 10 to 320 310 to 1       310/310
(100 %)
3 diff
(99.1 %id)
AI869546 anaplastic oligodendroglioma, brain .a-u 20 to 347 328 to 1       328/328
(100 %)
3 diff
(99.1 %id)
BE263711 lung, small cell carcinoma .a-u 26 to 273 1 to 248       248/270
(91 %)
1 diff
(99.7 %id)
AI928729 anaplastic oligodendroglioma, brain .a-u 28 to 313 286 to 1       286/294
(97 %)
0 diff
(100 %id)
AI080072   .a-u 30 to 347 318 to 1       318/318
(100 %)
0 diff
(100 %id)
AI933292 anaplastic oligodendroglioma, brain .a-u 40 to 347 308 to 1       308/308
(100 %)
0 diff
(100 %id)
AI936860 anaplastic oligodendroglioma, brain .a-u 40 to 320 281 to 1       281/281
(100 %)
0 diff
(100 %id)
BU931277 ovary, teratocarcinoma, cell line .a-u 41 to 844 1 to 818       818/886
(92 %)
24 diff
(97.3 %id)
DA732977   .a-u 47 to 485 2 to 441   capped   440/441
(99 %)
5 diff
(98.9 %id)
AI573288 anaplastic oligodendroglioma, brain .a-u 48 to 329 282 to 1       282/282
(100 %)
0 diff
(100 %id)
CN412500 embryonic stem cells, cell lines H1, H7, andH9 .a-u 49 to 268 1 to 220       220/220
(100 %)
0 diff
(100 %id)
CN412508 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a-u 54 to 626 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
AI360261 anaplastic oligodendroglioma, brain .a-u 61 to 347 287 to 1       287/287
(100 %)
0 diff
(100 %id)
AI566840 anaplastic oligodendroglioma, brain .a-u 61 to 320 260 to 1       260/260
(100 %)
0 diff
(100 %id)
AI871305 anaplastic oligodendroglioma, brain .a-u 66 to 320 256 to 1       256/256
(100 %)
10 diff
(96.1 %id)
AW015433   .a-u 115 to 346 232 to 1       232/232
(100 %)
2 diff
(99.2 %id)
AU128087   .a-u 120 to 653 2 to 536   capped   535/535
(100 %)
6 diff
(98.9 %id)
DB173546 kidney, tumor tissue .a-u 123 to 478 2 to 357   capped   356/356
(100 %)
1 diff
(99.8 %id)
DA288536 corpus callosum .a-u 127 to 718 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
BF593864 brain, glioblastoma (pooled) .a-u 143 to 298 157 to 1       157/157
(100 %)
5 diff
(96.9 %id)
BM083874 lung, small cell carcinoma .a-u 185 to 773 23 to 606       584/606
(96 %)
6 diff
(99.1 %id)
AA722645 heart .a-u 236 to 347 114 to 1       328/350
(93 %)
17 diff
(95.2 %id)
BC013923 Lung, small cell carcinoma .a-u 303 to 1442 1 to 1140   available from MGC, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 1140/1140
(100 %)
1 diff
(100.0 %id)
BE206866 lung, small cell carcinoma .a-u 304 to 944 1 to 641       641/641
(100 %)
7 diff
(99.0 %id)
AI146406 brain, glioblastoma (pooled) .a-u 340 to 819 1 to 480     Submitted on the opposite strand 480/480
(100 %)
0 diff
(100 %id)
AI151028 brain, glioblastoma (pooled) .a-u 340 to 742 1 to 403     Submitted on the opposite strand 403/403
(100 %)
0 diff
(100 %id)
AI199308 anaplastic oligodendroglioma, brain .a-u 340 to 802 1 to 463     Submitted on the opposite strand 463/463
(100 %)
1 diff
(99.8 %id)
AI356682 brain, glioblastoma (pooled) .a-u 340 to 1243 1 to 895     Submitted on the opposite strand 895/965
(92 %)
20 diff
(98.0 %id)
AI421119 brain, glioblastoma (pooled) .a-u 340 to 733 1 to 394     Submitted on the opposite strand 394/394
(100 %)
1 diff
(99.8 %id)
AI421743 brain, glioblastoma (pooled) .a-u 340 to 823 1 to 483     Submitted on the opposite strand 483/483
(100 %)
1 diff
(99.8 %id)
AI418146 brain, glioblastoma (pooled) .a-u 340 to 829 1 to 489     Submitted on the opposite strand 489/490
(99 %)
2 diff
(99.6 %id)
AI566261 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a-u 340 to 854 1 to 514     Submitted on the opposite strand 514/514
(100 %)
1 diff
(99.9 %id)
AI611652 pooled germ cell tumors .a-u 340 to 738 1 to 399     Submitted on the opposite strand 399/399
(100 %)
1 diff
(99.8 %id)
AW055151 brain, glioblastoma (pooled) .a-u 340 to 945 1 to 607     Submitted on the opposite strand 607/607
(100 %)
2 diff
(99.7 %id)
AW044044 brain, glioblastoma (pooled) .a-u 340 to 786 1 to 449     Submitted on the opposite strand 449/518
(86 %)
7 diff
(98.7 %id)
BE672418 pooled germ cell tumors .a-u 340 to 1067 1 to 728     Submitted on the opposite strand 728/728
(100 %)
5 diff
(99.4 %id)
AW297711   .a-u 341 to 806 1 to 465     Submitted on the opposite strand 465/465
(100 %)
6 diff
(98.8 %id)
BF513177   .a-u 341 to 818 1 to 478     Submitted on the opposite strand 478/478
(100 %)
0 diff
(100 %id)
BF512088   .a-u 341 to 802 1 to 462     Submitted on the opposite strand 462/462
(100 %)
1 diff
(99.8 %id)
BF939816 brain, glioblastoma (pooled) .a-u 342 to 921 1 to 580     Submitted on the opposite strand 580/580
(100 %)
0 diff
(100 %id)
BI917204 brain .a-u 348 to 1040 1 to 693       693/694
(99 %)
1 diff
(99.9 %id)
TI_57242265   .a-u 348 to 1040 36 to 728       693/729
(95 %)
1 diff
(99.9 %id)
L07335 retina .a-u 348 to 1453 1 to 1107 A267X     1107/1109
(99 %)
5 diff
(99.6 %id)
AA707717 pineal gland .a-u 351 to 733 5 to 380     Submitted on the opposite strand 376/380
(98 %)
6 diff
(98.5 %id)
AI052267 brain, glioblastoma (pooled) .a-u 358 to 802 1 to 445     Submitted on the opposite strand 445/450
(98 %)
3 diff
(99.4 %id)
AI423139 brain, glioblastoma (pooled) .a-u 358 to 733 1 to 376     Submitted on the opposite strand 376/376
(100 %)
2 diff
(99.5 %id)
AW615144 pooled germ cell tumors .a-u 358 to 784 1 to 427     Submitted on the opposite strand 427/427
(100 %)
4 diff
(99.1 %id)
AI056908 brain, glioblastoma (pooled) .a-u 363 to 741 1 to 379     Submitted on the opposite strand 379/379
(100 %)
2 diff
(99.5 %id)
AI094794 brain, glioblastoma (pooled) .a-u 365 to 873 1 to 509     Submitted on the opposite strand 509/509
(100 %)
0 diff
(100 %id)
AI146367 brain, glioblastoma (pooled) .a-u 365 to 824 1 to 460     Submitted on the opposite strand 460/465
(98 %)
2 diff
(99.6 %id)
AI096977 brain, glioblastoma (pooled) .a-u 365 to 829 1 to 465     Submitted on the opposite strand 465/465
(100 %)
1 diff
(99.8 %id)
AI292258 placenta .a-u 365 to 824 1 to 460     Submitted on the opposite strand 460/460
(100 %)
2 diff
(99.6 %id)
AI364349 anaplastic oligodendroglioma, brain .a-u 365 to 740 1 to 376     Submitted on the opposite strand 376/376
(100 %)
0 diff
(100 %id)
AI373018 anaplastic oligodendroglioma, brain .a-u 365 to 802 1 to 438     Submitted on the opposite strand 438/443
(98 %)
1 diff
(99.8 %id)
AI571299 anaplastic oligodendroglioma, brain .a-u 365 to 871 1 to 507     Submitted on the opposite strand 507/507
(100 %)
1 diff
(99.9 %id)
AI631443 pooled germ cell tumors .a-u 365 to 815 1 to 451     Submitted on the opposite strand 451/452
(99 %)
5 diff
(98.9 %id)
AI971611 pooled germ cell tumors .a-u 365 to 901 1 to 537     Submitted on the opposite strand 537/537
(100 %)
0 diff
(100 %id)
AW071909 anaplastic oligodendroglioma, brain .a-u 365 to 901 1 to 537     Submitted on the opposite strand 537/537
(100 %)
0 diff
(100 %id)
AW005368 anaplastic oligodendroglioma, brain .a-u 365 to 824 1 to 460     Submitted on the opposite strand 460/460
(100 %)
0 diff
(100 %id)
AW131705 brain, medulloblastoma .a-u 365 to 811 1 to 448     Submitted on the opposite strand 448/448
(100 %)
1 diff
(99.8 %id)
AW131791 brain, medulloblastoma .a-u 365 to 916 1 to 552     Submitted on the opposite strand 552/552
(100 %)
0 diff
(100 %id)
AW235281 pooled germ cell tumors .a-u 365 to 739 1 to 375     Submitted on the opposite strand 375/375
(100 %)
0 diff
(100 %id)
AI480221 anaplastic oligodendroglioma, brain .a-u 366 to 902 1 to 537     Submitted on the opposite strand 537/537
(100 %)
1 diff
(99.9 %id)
Z31560   .a-u 366 to 1447 1 to 1082       1082/1085
(99 %)
1 diff
(100.0 %id)
AA451892   .a-u 369 to 825 5 to 451     Submitted on the opposite strand 447/451
(99 %)
6 diff
(98.7 %id)
CD673437 eye, lens .a-u 370 to 939 1 to 571     Submitted on the opposite strand 571/571
(100 %)
15 diff
(97.4 %id)
TI_1948241389   .a-u 376 to 1330 137 to 1101       965/1370
(70 %)
55 diff
(96.0 %id)
TI_1948241390   .a-u 376 to 1244 135 to 1023       889/1363
(65 %)
53 diff
(96.2 %id)
TI_1948242153   .a-u 376 to 1244 139 to 1030       892/1499
(59 %)
49 diff
(96.8 %id)
EL733364 mixed .a-u 378 to 1010 1 to 633       633/633
(100 %)
1 diff
(99.9 %id)
AI830615 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a-u 380 to 782 1 to 393     Submitted on the opposite strand 393/418
(94 %)
18 diff
(95.7 %id)
AI990431 thymus, pooled .a-u 384 to 855 1 to 473     Submitted on the opposite strand 473/473
(100 %)
14 diff
(97.1 %id)
AW028031 brain, glioblastoma (pooled) .a-u 386 to 870 1 to 485     Submitted on the opposite strand 485/485
(100 %)
0 diff
(100 %id)
DT217961 brain .a-u 387 to 1062 1 to 676       676/676
(100 %)
0 diff
(100 %id)
BE792833 lung, small cell carcinoma .a-u 399 to 1134 1 to 733       733/740
(99 %)
5 diff
(99.4 %id)
BG827056 muscle, rhabdomyosarcoma .a-u 400 to 1156 1 to 756       756/764
(98 %)
13 diff
(98.3 %id)
BE797259 lung, small cell carcinoma .a-u 403 to 1236 1 to 833       833/834
(99 %)
11 diff
(98.7 %id)
CR592780 fetal brain .a-u 477 to 2441 1 to 1965   tiling clone,   1965/1965
(100 %)
0 diff
(100 %id)
CB850659 lung, Primary Lung Cystic Fibrosis EpithelialCells .a-u 739 to 1460 722 to 1       722/722
(100 %)
3 diff
(99.6 %id)
BM981270 lung, Primary Lung Cystic Fibrosis EpithelialCells .a-u 775 to 1460 686 to 1       686/686
(100 %)
4 diff
(99.5 %id)
TI_45211883   .a-u 797 to 1568 82 to 857       776/860
(90 %)
37 diff
(95.7 %id)
BI600403 brain, hypothalamus .a-u 798 to 1568 1 to 775       775/778
(99 %)
37 diff
(95.3 %id)
CD674843 eye, lens .a-u 818 to 1457 648 to 9     Submitted on the opposite strand 640/648
(98 %)
0 diff
(100 %id)
BQ045260 lung, Primary Lung Cystic Fibrosis EpithelialCells .a-u 818 to 1448 643 to 13   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 631/631
(100 %)
0 diff
(100 %id)
BU733331 eye, optic nerve .a-u 833 to 1460 628 to 1       628/628
(100 %)
3 diff
(99.6 %id)
AU144564 whole embryo, mainly head .a-u 867 to 1448 587 to 1       587/625
(93 %)
14 diff
(97.8 %id)
BF339049 brain, glioblastoma with EGFR amplification .a-u 877 to 1474 1 to 596       596/950
(62 %)
16 diff
(98.4 %id)
AW732255 lung, small cell carcinoma .a-u 900 to 1442 556 to 14   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 543/543
(100 %)
3 diff
(99.5 %id)
AW162970 brain, frontal lobe .a-u 918 to 1453 540 to 5       536/540
(99 %)
0 diff
(100 %id)
CD674635 eye, lens .a-u 960 to 1466 516 to 10     Submitted on the opposite strand 507/516
(98 %)
0 diff
(100 %id)
BM976277 lung, Primary Lung Cystic Fibrosis EpithelialCells .a-u 964 to 1448 497 to 13   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 485/485
(100 %)
0 diff
(100 %id)
CN412505 embryonic stem cells, cell lines H1, H7, andH9 .a-u 974 to 1466 520 to 29     Submitted on the opposite strand 492/520
(94 %)
0 diff
(100 %id)
DB363805   .a-u 999 to 1442 442 to 1       442/444
(99 %)
11 diff
(97.6 %id)
BG115071 duodenal adenocarcinoma, cell line, small intestine .a-u 1019 to 1687 26 to 687       662/924
(71 %)
6 diff
(99.4 %id)
BI918715 brain .a-u 1083 to 1953 33 to 906       874/906
(96 %)
6 diff
(99.4 %id)
TI_57241080   .a-u 1083 to 1953 33 to 906       874/906
(96 %)
6 diff
(99.4 %id)
BX409987 brain, fetal brain .a-u 1167 to 2104 1 to 935       935/965
(96 %)
32 diff
(96.7 %id)
BF923831 nervous_tumor .a-u 1272 to 1461 1 to 187       187/187
(100 %)
5 diff
(97.4 %id)
BX426082 brain, fetal brain .a-u 1321 to 2385 1061 to 2       1060/1139
(93 %)
0 diff
(100 %id)
CR739301 anaplastic oligodendroglioma, brain .a-u 1338 to 1849 1 to 512       512/512
(100 %)
2 diff
(99.7 %id)
CN430684 embryonic stem cells, cell lines H1, H7, andH9 .a-u 1357 to 1978 1 to 624       624/624
(100 %)
2 diff
(99.7 %id)
AW016610   .a-u 1391 to 1771 398 to 18   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 381/395
(96 %)
0 diff
(100 %id)
CD656482 Embryonic Stem cells .a-u 1423 to 2224 13 to 809       797/853
(93 %)
17 diff
(98.1 %id)
TI_149274382   .a-u 1442 to 1942 587 to 87   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 501/954
(52 %)
3 diff
(99.7 %id)
BM968536 lung, Primary Lung Epithelial Cells .a-u 1442 to 1942 518 to 18   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 501/502
(99 %)
3 diff
(99.5 %id)
DA730384   .a-u 1443 to 2202 2 to 761   capped   760/768
(98 %)
7 diff
(99.1 %id)
BM722297 eye, fetal eye .a-u 1543 to 2060 1 to 518   fully sequenced, Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 518/518
(100 %)
1 diff
(99.9 %id)
BX455366 brain, fetal brain .a-u 1547 to 2441 908 to 1       908/937
(96 %)
52 diff
(94.5 %id)
BM793999 Ascites, stomach .a-u 1559 to 2161 1 to 603       603/603
(100 %)
0 diff
(100 %id)
CN430682 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a-u 1569 to 1957 1 to 389       389/389
(100 %)
1 diff
(99.8 %id)
CN430683 embryonic stem cells, DMSO-treated H9 cellline .a-u 1592 to 2327 1 to 737       737/737
(100 %)
3 diff
(99.6 %id)
BM696988 eye, lens .a-u 1651 to 2085 1 to 435   fully sequenced, Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 435/435
(100 %)
1 diff
(99.8 %id)
BM719524 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a-u 1651 to 2077 1 to 427   fully sequenced, Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 427/427
(100 %)
0 diff
(100 %id)
TI_149306455   .a-u 1652 to 2446 885 to 92   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 794/969
(81 %)
11 diff
(98.9 %id)
TI_149301556   .a-u 1658 to 2450 867 to 85   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 783/940
(83 %)
12 diff
(98.8 %id)
TI_149306720   .a-u 1663 to 2446 864 to 84   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 781/915
(85 %)
5 diff
(99.5 %id)
TI_149293007   .a-u 1668 to 2450 851 to 78   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 774/806
(96 %)
16 diff
(98.1 %id)
CX873654 embryonic stem .a-u 1674 to 2453 790 to 12     Submitted on the opposite strand 779/790
(98 %)
0 diff
(100 %id)
AI564010 anaplastic oligodendroglioma, brain .a-u 1680 to 2179 498 to 1       498/498
(100 %)
2 diff
(99.6 %id)
AA133407 lung, lung carcinoma .a-u 1684 to 2138 1 to 451   fully sequenced,   451/451
(100 %)
3 diff
(99.4 %id)
AI928647 anaplastic oligodendroglioma, brain .a-u 1687 to 2000 314 to 1       314/314
(100 %)
1 diff
(99.7 %id)
CN430681 embryonic stem cells, DMSO-treated H9 cellline .a-u 1726 to 2249 1 to 524       524/524
(100 %)
0 diff
(100 %id)
BM978785 lung, Primary Lung Epithelial Cells .a-u 1738 to 2446 725 to 17   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 709/709
(100 %)
1 diff
(99.9 %id)
BI493100 cochlea, ear .a-u 1769 to 2070 1 to 302   fully sequenced,   302/302
(100 %)
5 diff
(98.4 %id)
AA115853 lung, lung carcinoma .a-u 1777 to 2199 1 to 425       425/430
(98 %)
3 diff
(99.4 %id)
BU686487 lung, Primary Lung Epithelial Cells .a-u 1782 to 2446 682 to 18   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 665/665
(100 %)
2 diff
(99.7 %id)
CV805536 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a-u 1801 to 2453 706 to 52   AAA Submitted on the opposite strand 655/939
(69 %)
0 diff
(100 %id)
BM979982 lung, Primary Lung Cystic Fibrosis EpithelialCells .a-u 1805 to 2450 663 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 645/645
(100 %)
1 diff
(99.9 %id)
AI669815 Prostate .a-u 1808 to 2452 646 to 1       646/646
(100 %)
2 diff
(99.7 %id)
TI_151697781   .a-u 1837 to 2450 737 to 122   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 616/983
(62 %)
34 diff
(96.6 %id)
AI364474 anaplastic oligodendroglioma, brain .a-u 1839 to 2179 341 to 1       341/341
(100 %)
0 diff
(100 %id)
BF057693 pooled germ cell tumors .a-u 1840 to 2444 605 to 1       605/605
(100 %)
0 diff
(100 %id)
TI_149279814   .a-u 1849 to 2443 650 to 56   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 595/1160
(51 %)
5 diff
(99.6 %id)
DB369969   .a-u 1869 to 2450 580 to 1       580/582
(99 %)
5 diff
(99.2 %id)
DB358179 whole embryo, mainly head .a-u 1874 to 2450 575 to 1       575/575
(100 %)
10 diff
(98.3 %id)
AU150404   .a-u 1878 to 2444 566 to 1       566/566
(100 %)
14 diff
(97.6 %id)
AI830219 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a-u 1879 to 2453 581 to 6       576/581
(99 %)
0 diff
(100 %id)
AI970550 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a-u 1881 to 2453 576 to 4       573/576
(99 %)
0 diff
(100 %id)
BF111919 pooled .a-u 1891 to 2453 566 to 4       563/566
(99 %)
0 diff
(100 %id)
BF448282 carcinoid, lung .a-u 1893 to 2453 561 to 1       561/561
(100 %)
1 diff
(99.9 %id)
CB854195 lung, Primary Lung Epithelial Cells .a-u 1899 to 2443 563 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 545/545
(100 %)
2 diff
(99.7 %id)
AW043768 pooled .a-u 1907 to 2453 552 to 6       547/552
(99 %)
0 diff
(100 %id)
AW006202 anaplastic oligodendroglioma, brain .a-u 1914 to 2452 539 to 1       539/539
(100 %)
2 diff
(99.7 %id)
BF939121 carcinoid, lung .a-u 1923 to 2443 525 to 6       520/525
(99 %)
0 diff
(100 %id)
AI680674 carcinoid, lung .a-u 1929 to 2450 528 to 6       523/528
(99 %)
0 diff
(100 %id)
DB369396   .a-u 1955 to 2450 496 to 1       496/496
(100 %)
6 diff
(98.8 %id)
BF433292 carcinoid, lung .a-u 1962 to 2443 487 to 6       482/487
(98 %)
0 diff
(100 %id)
AI458202 carcinoid, lung .a-u 1970 to 2449 480 to 1       480/480
(100 %)
1 diff
(99.8 %id)
BE220962 carcinoid, lung .a-u 1988 to 2449 463 to 2       462/463
(99 %)
0 diff
(100 %id)
AI954746 pooled germ cell tumors .a-u 1994 to 2442 469 to 21   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 449/449
(100 %)
1 diff
(99.8 %id)
AI375411 brain, glioblastoma (pooled) .a-u 1996 to 2446 456 to 6       451/456
(98 %)
0 diff
(100 %id)
CN430685 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a-u 1998 to 2450 1 to 454   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 454/454
(100 %)
1 diff
(99.8 %id)
AA504948   .a-u 2000 to 2451 450 to 1     Submitted on the opposite strand 450/450
(100 %)
4 diff
(99.2 %id)
AW969901   .a-u 2009 to 2424 74 to 489       416/490
(84 %)
1 diff
(99.8 %id)
AI361048 brain, glioblastoma (pooled) .a-u 2019 to 2450 432 to 1       432/432
(100 %)
0 diff
(100 %id)
AI161208 brain, glioblastoma (pooled) .a-u 2025 to 2436 412 to 1       412/412
(100 %)
0 diff
(100 %id)
BU740139 eye, fetal eye .a-u 2030 to 2450 439 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 421/421
(100 %)
2 diff
(99.6 %id)
AI291629 carcinoid, lung .a-u 2034 to 2447 416 to 3       414/416
(99 %)
0 diff
(100 %id)
AI479401 anaplastic oligodendroglioma, brain .a-u 2037 to 2453 422 to 4       419/422
(99 %)
0 diff
(100 %id)
BI493099 cochlea, ear .a-u 2040 to 2446 407 to 1   fully sequenced,   407/407
(100 %)
1 diff
(99.8 %id)
BM682840 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a-u 2047 to 2450 422 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 404/404
(100 %)
0 diff
(100 %id)
BM668019 eye, lens .a-u 2055 to 2450 414 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 396/396
(100 %)
0 diff
(100 %id)
AA837042 lung, small cell carcinoma .a-u 2068 to 2446 400 to 22   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 379/379
(100 %)
4 diff
(99.0 %id)
BF983131 duodenal adenocarcinoma, cell line, small intestine .a-u 2068 to 2434 1 to 366       366/986
(37 %)
8 diff
(99.2 %id)
DB555694 hypothalamus .a-u 2086 to 2448 1 to 363     Submitted on the opposite strand 363/365
(99 %)
16 diff
(95.7 %id)
AA133334 lung, lung carcinoma .a-u 2108 to 2457 345 to 1   fully sequenced,   345/345
(100 %)
4 diff
(98.9 %id)
DB565580 hypothalamus .a-u 2112 to 2448 1 to 339     Submitted on the opposite strand 339/339
(100 %)
24 diff
(93.0 %id)
AA491795 Kidney .a-u 2120 to 2457 343 to 6       338/343
(98 %)
0 diff
(100 %id)
BG152545 brain, glioblastoma without EGFR amplification .a-u 2125 to 2456 332 to 1   tiling clone,   332/332
(100 %)
0 diff
(100 %id)
AI350401 pooled germ cell tumors .a-u 2163 to 2452 291 to 1       291/291
(100 %)
2 diff
(99.4 %id)
AI867138 carcinoid, lung .a-u 2217 to 2450 252 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 234/234
(100 %)
7 diff
(97.1 %id)
AA987255 carcinoid, lung .a-u 2264 to 2450 205 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 187/187
(100 %)
1 diff
(99.5 %id)
DB539807 hippocampus .a-u 2283 to 2444 1 to 162     Submitted on the opposite strand 162/162
(100 %)
6 diff
(96.3 %id)
AI097136 brain, glioblastoma (pooled) .b-u 1 to 472 1 to 472   tiling clone, Submitted on the opposite strand 472/472
(100 %)
0 diff
(100 %id)
BF305922 muscle, rhabdomyosarcoma .b-u 3 to 759 1 to 739       739/739
(100 %)
17 diff
(97.7 %id)
BF305813 muscle, rhabdomyosarcoma .b-u 3 to 768 1 to 760       760/784
(96 %)
52 diff
(93.4 %id)
BF305566 muscle, rhabdomyosarcoma .b-u 3 to 801 1 to 786       786/898
(87 %)
32 diff
(96.5 %id)
AA079710 Pancreas .b-u 5 to 353 1 to 347       347/352
(98 %)
22 diff
(93.8 %id)
BE795592 lung, small cell carcinoma .b-u 6 to 868 1 to 860       860/861
(99 %)
20 diff
(97.7 %id)
AA121978 Pancreas .b-u 48 to 498 1 to 447       447/447
(100 %)
59 diff
(86.9 %id)
TI_1948241392   .b-u 60 to 933 995 to 127       869/1392
(62 %)
0 diff
(100 %id)
BM700202 eye, lens .b-u 92 to 664 1 to 573       573/573
(100 %)
0 diff
(100 %id)
CN412501 embryonic stem cells, cell lines H1, H7, andH9 .b-u 96 to 702 6 to 612       607/612
(99 %)
10 diff
(98.4 %id)
DA129631 alzheimer cortex .b-u 114 to 656 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
BM543615 brain, hippocampus .b-u 127 to 1031 928 to 1     Submitted on the opposite strand 928/975
(95 %)
27 diff
(97.3 %id)
BF530575 anaplastic oligodendroglioma with 1p/19qloss, brain .b-u 137 to 819 1 to 682       682/682
(100 %)
6 diff
(99.2 %id)
TI_1948242155   .b-u 167 to 933 907 to 129       779/1371
(56 %)
0 diff
(100 %id)
TI_149303222   .b-u 180 to 1045 933 to 80   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 854/960
(88 %)
17 diff
(98.3 %id)
TI_151758558   .b-u 206 to 1045 920 to 95   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 826/911
(90 %)
20 diff
(97.9 %id)
TI_149297657   .b-u 238 to 1045 865 to 64   tiling clone, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 802/976
(82 %)
12 diff
(98.8 %id)
TI_149298451   .b-u 254 to 1045 872 to 91   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 782/782
(100 %)
30 diff
(96.2 %id)
TI_1948241914   .b-u 262 to 933 1271 to 602     Submitted on the opposite strand 670/1318
(50 %)
0 diff
(100 %id)
TI_1948241391   .b-u 269 to 933 795 to 128       668/1355
(49 %)
0 diff
(100 %id)
BM792683 Ascites, stomach .b-u 272 to 706 1 to 436       436/436
(100 %)
1 diff
(99.8 %id)
TI_1948241655   .b-u 287 to 933 1244 to 607     Submitted on the opposite strand 638/1309
(48 %)
0 diff
(100 %id)
BM931982 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b-u 296 to 945 1 to 650       650/650
(100 %)
1 diff
(99.9 %id)
CN412492 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b-u 310 to 873 1 to 565       565/565
(100 %)
5 diff
(99.2 %id)
CD105331 brain, Pituitary .b-u 314 to 1045 21 to 750   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 730/750
(97 %)
10 diff
(98.7 %id)
CB305859 lung, Primary Lung Cystic Fibrosis EpithelialCells .b-u 339 to 1051 726 to 13   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 714/714
(100 %)
2 diff
(99.8 %id)
TI_149282381   .b-u 347 to 1051 766 to 62   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 705/1071
(65 %)
3 diff
(99.8 %id)
CN412504 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b-u 355 to 930 9 to 584       576/584
(98 %)
6 diff
(99.0 %id)
BM983807 lung, Primary Lung Epithelial Cells .b-u 379 to 1051 685 to 13   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 673/673
(100 %)
1 diff
(99.9 %id)
BF935630 nervous_tumor .b-u 410 to 906 514 to 19     Submitted on the opposite strand 496/517
(95 %)
0 diff
(100 %id)
TI_1948241654   .b-u 508 to 933 1035 to 608     Submitted on the opposite strand 428/1382
(30 %)
0 diff
(100 %id)
CN412498 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b-u 542 to 999 7 to 464       458/464
(98 %)
6 diff
(98.8 %id)
TI_1948241913   .b-u 549 to 933 1001 to 615     Submitted on the opposite strand 387/1408
(27 %)
0 diff
(100 %id)
AI073494   .b-u 567 to 1048 482 to 1       482/482
(100 %)
0 diff
(100 %id)
AI285511 esophagus, squamous cell carcinoma .b-u 578 to 1051 471 to 1       471/471
(100 %)
10 diff
(97.9 %id)
BE140684 head_neck .b-u 581 to 770 1 to 189       189/192
(98 %)
7 diff
(96.4 %id)
BX118929   .b-u 601 to 1045 461 to 15   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 447/447
(100 %)
4 diff
(99.2 %id)
AA079711 Pancreas .b-u 605 to 921 330 to 6       325/333
(97 %)
0 diff
(100 %id)
AA773739 lung, lung carcinoma .b-u 671 to 1048 376 to 1       376/376
(100 %)
2 diff
(99.5 %id)
AA121979 Pancreas .b-u 680 to 1053 376 to 1       376/376
(100 %)
4 diff
(99.0 %id)
AI656655 pooled germ cell tumors .b-u 824 to 1047 224 to 1       224/224
(100 %)
0 diff
(100 %id)
AK312595 brain Gene SOX2, variant not shown         Suspected internal deletion, this clone was ignored    
DA028695   Gene SOX2, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA060375 cerebellum Gene SOX2, variant not shown       capped      
DA085155 cerebellum Gene SOX2, variant not shown       capped      
DA136439 alzheimer cortex Gene SOX2, variant not shown       capped      
DA138842 alzheimer cortex Gene SOX2, variant not shown       capped      
DA140785 alzheimer cortex Gene SOX2, variant not shown       capped      
DA164811 amygdala Gene SOX2, variant not shown       capped      
DA297806 hippocampus Gene SOX2, variant not shown       capped      
DA388996 thalamus Gene SOX2, variant not shown       capped      
CN412493 embryonic stem cells, cell lines H1, H7, andH9 Gene SOX2, variant not shown         Suspected internal deletion, this clone was ignored    
CN412494 embryonic stem cells, DMSO-treated H9 cellline Gene SOX2, variant not shown              
CN412495 embryonic stem cells, cell lines H1, H7, andH9 Gene SOX2, variant not shown              
CN412496 embryonic stem cells, cell lines H1, H7, andH9 Gene SOX2, variant not shown              
CN412499 embryonic stem cells, cell lines H1, H7, andH9 Gene SOX2, variant not shown              
CN412502 embryonic stem cells, cell lines H1, H7, andH9 Gene SOX2, variant not shown              
CN412506 embryonic stem cells, cell lines H1, H7, andH9 Gene SOX2, variant not shown              
CN412507 embryonic stem cells, cell lines H1, H7, andH9 Gene SOX2, variant not shown              
BX426083 brain, fetal brain Gene SOX2, variant not shown              
BX440869 brain, fetal brain Gene SOX2, variant not shown              
BX419967 brain, fetal brain Gene SOX2, variant not shown              
DA446197 tongue, tumor tissue Gene SOX2, variant not shown       capped      
DT216920 brain Gene SOX2, variant not shown              
DT220821 brain Gene SOX2, variant not shown              
DA498256 brain Gene SOX2, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA507019 brain Gene SOX2, variant not shown       capped      
DA507352 brain Gene SOX2, variant not shown       capped This clone was ignored    
DA529749 brain Gene SOX2, variant not shown       capped      
CD673438 eye, lens Gene SOX2, variant not shown         Submitted on the opposite strand    
DB476380 hippocampus Gene SOX2, variant not shown              
DB494527 hypothalamus Gene SOX2, variant not shown              
BY798110 eye Gene SOX2, variant not shown              
AI363077 brain, glioblastoma (pooled) Gene SOX2, variant not shown         Suspected internal deletion, this clone was ignored    
BE019342 muscle, rhabdomyosarcoma Gene SOX2, variant not shown              
BE295190 muscle, rhabdomyosarcoma Gene SOX2, variant not shown              
BE270393 Burkitt lymphoma, lymph Gene SOX2, variant not shown              
BF594193 brain, glioblastoma (pooled) Gene SOX2, variant not shown         Suspected internal deletion, this clone was ignored    
BF303603 muscle, rhabdomyosarcoma Gene SOX2, variant not shown              
BF306406 muscle, rhabdomyosarcoma Gene SOX2, variant not shown              
BF305585 muscle, rhabdomyosarcoma Gene SOX2, variant not shown              
BG825605 muscle, rhabdomyosarcoma Gene SOX2, variant not shown              
BG825311 muscle, rhabdomyosarcoma Gene SOX2, variant not shown              
BG827532 muscle, rhabdomyosarcoma Gene SOX2, variant not shown              
BG826464 muscle, rhabdomyosarcoma Gene SOX2, variant not shown              
BI458559 brain, hypothalamus Gene SOX2, variant not shown              
BM811527 astrocytoma grade IV, cell line, brain Gene SOX2, variant not shown              
BU552731 ovary, teratocarcinoma, cell line Gene SOX2, variant not shown              
BU846110 ovary, teratocarcinoma, cell line Gene SOX2, variant not shown              
BU849702 ovary, teratocarcinoma, cell line Gene SOX2, variant not shown         This clone was ignored    
BU849703 ovary, teratocarcinoma, cell line Gene SOX2, variant not shown         This clone was ignored    
BU856268 ovary, teratocarcinoma, cell line Gene SOX2, variant not shown         This clone was ignored    
EB387153 eye, optic nerve Gene SOX2, variant not shown         Suspected internal deletion, this clone was ignored    
NM_003106.2   Gene SOX2, variant not shown       RefSeq, AAA      
DA699433   Gene SOX2, variant not shown       capped      
DA709398   Gene SOX2, variant not shown       capped      
DA764661 tongue Gene SOX2, variant not shown       capped      
DA767042 tongue Gene SOX2, variant not shown       capped      
DA782059 brain Gene SOX2, variant not shown       capped      
BM827534 Ascites, stomach Gene SOX2, variant not shown         Suspected internal deletion, this clone was ignored    
DA904651   Gene SOX2, variant not shown       capped      
DB011892 esophageal, tumor tissue Gene SOX2, variant not shown       capped      
DB014287 esophageal, tumor tissue Gene SOX2, variant not shown       capped      
DB018335 esophageal, tumor tissue Gene SOX2, variant not shown       capped      
TI_149300134   Gene SOX2, variant not shown              
TI_149314065   Gene SOX2, variant not shown              
TI_149315363   Gene SOX2, variant not shown              
DB179315 kidney, tumor tissue Gene SOX2, variant not shown       capped Suspected internal deletion, this clone was ignored    
BM983188 lung, Primary Lung Cystic Fibrosis EpithelialCells Gene SOX2, variant not shown              
BM687865 eye, Retina Foveal and Macular Gene SOX2, variant not shown         Suspected internal deletion, this clone was ignored    
BM718943 eye, fetal eye Gene SOX2, variant not shown              
TI_151717069   Gene SOX2, variant not shown              
TI_151732385   Gene SOX2, variant not shown              
TI_151808794   Gene SOX2, variant not shown              
? Gene Summary Gene on genome mRNA:.a-u, .b-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI