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Gene SORCS2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
83 supporting clones for gene SORCS2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AB037750 brain .a 757 to 6043 1 to 5287   tiling clone, available from KIAA,   5287/5287
(100 %)
7 diff
(99.9 %id)
AF286190   .a 102 to 1352 1 to 1251   tiling clone,   1251/1251
(100 %)
0 diff
(100 %id)
AK295629 hippocampus .b 1 to 3543 1 to 3543 S544P tiling clone,   3543/3543
(100 %)
5 diff
(99.9 %id)
BF738193 bladder_tumor .a 4260 to 4640 384 to 6     Submitted on the opposite strand 379/384
(98 %)
0 diff
(100 %id)
BF822157 kidney_tumor .a 3756 to 4168 1 to 412       412/417
(98 %)
21 diff
(95.0 %id)
BF899396 marrow .e 1 to 388 387 to 1 K31S W32G T33H L34F L35C ... tiling clone, Submitted on the opposite strand 387/388
(99 %)
1 diff
(99.8 %id)
BF899398 marrow .e 1 to 388 387 to 1 K31S W32G T33H L34F L35C ...   Submitted on the opposite strand 387/388
(99 %)
1 diff
(99.8 %id)
BF899401 marrow .e 1 to 388 387 to 1 K31S W32G T33H L34F L35C ...   Submitted on the opposite strand 387/388
(99 %)
1 diff
(99.8 %id)
BF953607 nervous_normal .a 1323 to 1760 445 to 2       444/445
(99 %)
20 diff
(95.6 %id)
DA066496 cerebellum .a 3467 to 3996 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DA109712 cerebellum .a 827 to 1364 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
DA193086 amygdala .a 2076 to 2651 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DA212632 brain .a 1113 to 1643 2 to 533   capped   532/532
(100 %)
1 diff
(99.9 %id)
DA215907 brain .a 2123 to 2462 2 to 341   tiling clone, capped   340/340
(100 %)
2 diff
(99.5 %id)
DC332619 hippocampus .b 1 to 533 1 to 533       533/533
(100 %)
2 diff
(99.7 %id)
DA330254 hippocampus .a 1109 to 1655 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA344229 substantia nigra .a 3716 to 4238 2 to 524   capped   523/523
(100 %)
0 diff
(100 %id)
DA405842 thalamus .c 1 to 558 2 to 559 exact tiling clone, capped   558/558
(100 %)
0 diff
(100 %id)
DA416833 thalamus .a 1382 to 1889 2 to 509   capped   508/508
(100 %)
0 diff
(100 %id)
BX110646 whole brain .a 5631 to 6052 435 to 15   AAA   421/421
(100 %)
2 diff
(99.6 %id)
CD630386   .a 3163 to 3370 1 to 209       209/210
(99 %)
3 diff
(98.6 %id)
CD630387   .a 3143 to 3370 226 to 1       226/228
(99 %)
2 diff
(99.2 %id)
CD630388   .a 3143 to 3370 228 to 1       228/230
(99 %)
0 diff
(100 %id)
CD630389   .a 3141 to 3370 1 to 230       230/231
(99 %)
2 diff
(99.2 %id)
CD630390   .a 4846 to 4923 8 to 85       78/85
(91 %)
0 diff
(100 %id)
CD630391   .a 4846 to 5340 502 to 8       495/509
(97 %)
0 diff
(100 %id)
CN358129 embryonic stem cells, cell lines H1, H7, andH9 .a 1151 to 1400 14 to 263       250/263
(95 %)
7 diff
(97.4 %id)
CN358130 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3250 to 3623 1 to 374       374/374
(100 %)
0 diff
(100 %id)
BX508482   .a 2647 to 3060 1 to 414       414/414
(100 %)
2 diff
(99.6 %id)
DB571737 hypothalamus .f 251 to 713 1 to 464     Submitted on the opposite strand 464/464
(100 %)
3 diff
(99.4 %id)
DB572726 hypothalamus .f 1 to 713 1 to 712 L5C P6Q K7R T8H L9W ... tiling clone, Submitted on the opposite strand 712/712
(100 %)
8 diff
(98.9 %id)
DA571405 whole embryo, mainly head .a 4657 to 5398 11 to 754   capped   744/754
(98 %)
10 diff
(98.7 %id)
DB358263 whole embryo, mainly head .a 5473 to 6043 565 to 1   tiling clone,   565/567
(99 %)
22 diff
(96.2 %id)
DA602344   .a 4197 to 4702 2 to 507   capped   506/506
(100 %)
1 diff
(99.9 %id)
DC360013   .b 3025 to 3597 1 to 573   tiling clone,   573/573
(100 %)
0 diff
(100 %id)
R12322 whole brain .a 4739 to 5156 1 to 427       427/434
(98 %)
18 diff
(95.9 %id)
R37251 whole brain .a 5668 to 6060 405 to 2   tiling clone,   404/438
(92 %)
23 diff
(94.8 %id)
R19806 whole brain .a 3741 to 4105 1 to 369       369/369
(100 %)
7 diff
(98.2 %id)
R45034 whole brain .a 5747 to 6042 326 to 15   AAA   312/324
(96 %)
17 diff
(94.8 %id)
R56444 whole brain .a 4739 to 5165 1 to 435       435/440
(98 %)
13 diff
(97.1 %id)
R56445 whole brain .a 5652 to 6060 417 to 2       416/417
(99 %)
13 diff
(96.9 %id)
R60911 whole brain .a 5618 to 6043 453 to 10       444/495
(89 %)
0 diff
(100 %id)
R61030 whole brain .a 4405 to 4806 1 to 406       406/416
(97 %)
5 diff
(98.8 %id)
R61161 whole brain .a 938 to 1372 435 to 1     Submitted on the opposite strand 435/435
(100 %)
8 diff
(98.2 %id)
H05498 whole brain .a 5632 to 6046 435 to 5       431/446
(96 %)
0 diff
(100 %id)
H12913 whole brain .a 4478 to 4927 1 to 453       453/453
(100 %)
8 diff
(98.3 %id)
H14981 whole brain .a 4505 to 4893 1 to 392       392/392
(100 %)
8 diff
(98.0 %id)
H14982 whole brain .a 5647 to 6041 405 to 1       405/411
(98 %)
20 diff
(95.2 %id)
AA424530 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 5731 to 6043 329 to 17   AAA   313/313
(100 %)
1 diff
(99.7 %id)
AA424596 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4453 to 4873 1 to 421       421/421
(100 %)
2 diff
(99.6 %id)
AA614669 breast .a 5571 to 6047 477 to 2       476/477
(99 %)
0 diff
(100 %id)
AA974248 pooled germ cell tumors .a 5705 to 6043 351 to 13   AAA   339/339
(100 %)
2 diff
(99.5 %id)
AA993556   .a 5578 to 6043 478 to 13   AAA   466/466
(100 %)
16 diff
(96.6 %id)
AI003491   .a 5851 to 6041 195 to 5       191/195
(97 %)
0 diff
(100 %id)
AI206155 pooled germ cell tumors .a 99 to 519 1 to 421     Submitted on the opposite strand 421/421
(100 %)
0 diff
(100 %id)
AI962561 pooled germ cell tumors .a 99 to 526 1 to 428   tiling clone, Submitted on the opposite strand 428/428
(100 %)
0 diff
(100 %id)
AW072763 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .a 5609 to 6043 435 to 1       435/435
(100 %)
1 diff
(99.8 %id)
AW316936 brain, three pooled meningiomas .a 5642 to 6043 402 to 1       402/402
(100 %)
1 diff
(99.8 %id)
BE645901 Prostate .a 5788 to 6043 256 to 1       256/256
(100 %)
1 diff
(99.7 %id)
BE311463 Kidney, renal cell adenocarcinoma .a 4011 to 4585 1 to 576       576/771
(74 %)
11 diff
(98.6 %id)
BC035257 Skin, squamous cell carcinoma .a 4056 to 6043 1 to 1988   tiling clone, available from MGC, AAA   1988/1988
(100 %)
5 diff
(99.8 %id)
BG681754 skin, squamous cell carcinoma .a 4056 to 4734 1 to 677   available from MGC,   677/677
(100 %)
4 diff
(99.5 %id)
BM903984 eye, retinoblastoma .a 5448 to 6043 1 to 596   tiling clone,   596/641
(92 %)
3 diff
(99.6 %id)
DA628295 Kidney .a 4016 to 4568 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
T27123   .a 5664 to 6043 380 to 1       380/380
(100 %)
4 diff
(99.0 %id)
T27124   .a 4443 to 4768 1 to 326       326/326
(100 %)
3 diff
(99.1 %id)
NM_020777.2   .a 1 to 6060 1 to 6060 exact RefSeq,   6060/6061
(99 %)
5 diff
(100.0 %id)
DA710548   .a 3759 to 4308 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA781351 brain .a 2999 to 3573 2 to 577   capped   576/577
(99 %)
2 diff
(99.7 %id)
DA802980 brain .a 1533 to 2089 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DC378900 pericardium .d 1 to 549 1 to 549 exact tiling clone,   549/549
(100 %)
1 diff
(99.9 %id)
DB071935 testis .a 2365 to 2911 2 to 549   capped   548/548
(100 %)
3 diff
(99.5 %id)
DB118591 thymus .a 3249 to 3802 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DB127845 thymus .a 2273 to 2816 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
TI_149298252   .a 5347 to 6040 774 to 84   AAA   691/836
(82 %)
5 diff
(99.5 %id)
TI_149298723   .a 5332 to 6043 793 to 84   AAA   710/930
(76 %)
5 diff
(99.5 %id)
DB219450 trachea .a 1228 to 1780 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BU684590 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 5407 to 6040 651 to 19   AAA   633/633
(100 %)
3 diff
(99.6 %id)
BM975430 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 5341 to 6043 720 to 19   AAA   702/702
(100 %)
3 diff
(99.6 %id)
BM690324 eye, human retina .a 5005 to 5114 9 to 118       110/118
(93 %)
6 diff
(95.0 %id)
BM698595 eye, fetal eyes .a 4848 to 5311 1 to 465       465/465
(100 %)
3 diff
(99.4 %id)
BU736234 eye, fetal eyes .a 5522 to 6043 540 to 19   AAA   522/522
(100 %)
2 diff
(99.7 %id)
BM718354 eye, fetal eye .a 4514 to 5041 1 to 529   tiling clone,   529/529
(100 %)
2 diff
(99.7 %id)
BU741938 eye, fetal eye .a 5476 to 6044 587 to 19   AAA   569/569
(100 %)
1 diff
(99.9 %id)
BM718422 eye, fetal eye .a 4824 to 5216 1 to 393       393/393
(100 %)
1 diff
(99.8 %id)
CA439255 lung, Metastatic Chondrosarcoma .a 5478 to 6043 584 to 19   AAA   566/566
(100 %)
2 diff
(99.7 %id)
BQ774499 Chondrosarcoma Grade II, Left Pelvis .a 5515 to 6043 547 to 19   AAA   529/529
(100 %)
4 diff
(99.3 %id)
CA432043 cell lines, Enchondroma .a 5408 to 6043 653 to 19   AAA   635/635
(100 %)
2 diff
(99.7 %id)
TI_151698401   .a 5479 to 6043 682 to 115   AAA   568/935
(60 %)
16 diff
(98.3 %id)
TI_151760473   .a 5336 to 6043 790 to 85   AAA   706/894
(78 %)
12 diff
(98.7 %id)
DB288328 uterus .a 871 to 1426 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
AW904951 nervous_normal .a 4848 to 5311 1 to 465       465/465
(100 %)
3 diff
(99.4 %id)
DA096737 cerebellum .a 5522 to 6043 540 to 19   capped   522/522
(100 %)
2 diff
(99.7 %id)
DB298756 cerebellum .a 5522 to 6043 540 to 19       522/522
(100 %)
2 diff
(99.7 %id)
DA246297 brain .a 4514 to 5041 1 to 529   tiling clone, capped   529/529
(100 %)
2 diff
(99.7 %id)
DB306136 brain .a 4514 to 5041 1 to 529   tiling clone,   529/529
(100 %)
2 diff
(99.7 %id)
BU741938 eye, fetal eye .a 5476 to 6044 587 to 19   AAA   569/569
(100 %)
1 diff
(99.9 %id)
BU741938 eye, fetal eye .a 5476 to 6044 587 to 19   AAA   569/569
(100 %)
1 diff
(99.9 %id)
BM718422 eye, fetal eye .a 4824 to 5216 1 to 393       393/393
(100 %)
1 diff
(99.8 %id)
BM718422 eye, fetal eye .a 4824 to 5216 1 to 393       393/393
(100 %)
1 diff
(99.8 %id)
CA439255 lung, Metastatic Chondrosarcoma .a 5478 to 6043 584 to 19   AAA   566/566
(100 %)
2 diff
(99.7 %id)
CA439255 lung, Metastatic Chondrosarcoma .a 5478 to 6043 584 to 19   AAA   566/566
(100 %)
2 diff
(99.7 %id)
BQ774499 Chondrosarcoma Grade II, Left Pelvis .a 5515 to 6043 547 to 19   AAA   529/529
(100 %)
4 diff
(99.3 %id)
BQ774499 Chondrosarcoma Grade II, Left Pelvis .a 5515 to 6043 547 to 19   AAA   529/529
(100 %)
4 diff
(99.3 %id)
CA432043 cell lines, Enchondroma .a 5408 to 6043 653 to 19   AAA   635/635
(100 %)
2 diff
(99.7 %id)
CA432043 cell lines, Enchondroma .a 5408 to 6043 653 to 19   AAA   635/635
(100 %)
2 diff
(99.7 %id)
TI_151698401   .a 5479 to 6043 682 to 115   AAA   568/935
(60 %)
16 diff
(98.3 %id)
TI_151760473   .a 5336 to 6043 790 to 85   AAA   706/894
(78 %)
12 diff
(98.7 %id)
DB288328 uterus .a 871 to 1426 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C