cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
AB037750 | brain | .a | 757 to 6043 | 1 to 5287 | tiling clone, available from KIAA, | 5287/5287 (100 %) | 7 diff (99.9 %id) | ||
AF286190 | .a | 102 to 1352 | 1 to 1251 | tiling clone, | 1251/1251 (100 %) | 0 diff (100 %id) | |||
AK295629 | hippocampus | .b | 1 to 3543 | 1 to 3543 | S544P | tiling clone, | 3543/3543 (100 %) | 5 diff (99.9 %id) | |
BF738193 | bladder_tumor | .a | 4260 to 4640 | 384 to 6 | Submitted on the opposite strand | 379/384 (98 %) | 0 diff (100 %id) | ||
BF822157 | kidney_tumor | .a | 3756 to 4168 | 1 to 412 | 412/417 (98 %) | 21 diff (95.0 %id) | |||
BF899396 | marrow | .e | 1 to 388 | 387 to 1 | K31S W32G T33H L34F L35C ... | tiling clone, | Submitted on the opposite strand | 387/388 (99 %) | 1 diff (99.8 %id) |
BF899398 | marrow | .e | 1 to 388 | 387 to 1 | K31S W32G T33H L34F L35C ... | Submitted on the opposite strand | 387/388 (99 %) | 1 diff (99.8 %id) | |
BF899401 | marrow | .e | 1 to 388 | 387 to 1 | K31S W32G T33H L34F L35C ... | Submitted on the opposite strand | 387/388 (99 %) | 1 diff (99.8 %id) | |
BF953607 | nervous_normal | .a | 1323 to 1760 | 445 to 2 | 444/445 (99 %) | 20 diff (95.6 %id) | |||
DA066496 | cerebellum | .a | 3467 to 3996 | 2 to 531 | capped | 530/530 (100 %) | 1 diff (99.9 %id) | ||
DA109712 | cerebellum | .a | 827 to 1364 | 2 to 539 | capped | 538/538 (100 %) | 2 diff (99.7 %id) | ||
DA193086 | amygdala | .a | 2076 to 2651 | 2 to 577 | capped | 576/576 (100 %) | 2 diff (99.7 %id) | ||
DA212632 | brain | .a | 1113 to 1643 | 2 to 533 | capped | 532/532 (100 %) | 1 diff (99.9 %id) | ||
DA215907 | brain | .a | 2123 to 2462 | 2 to 341 | tiling clone, capped | 340/340 (100 %) | 2 diff (99.5 %id) | ||
DC332619 | hippocampus | .b | 1 to 533 | 1 to 533 | 533/533 (100 %) | 2 diff (99.7 %id) | |||
DA330254 | hippocampus | .a | 1109 to 1655 | 2 to 548 | capped | 547/547 (100 %) | 0 diff (100 %id) | ||
DA344229 | substantia nigra | .a | 3716 to 4238 | 2 to 524 | capped | 523/523 (100 %) | 0 diff (100 %id) | ||
DA405842 | thalamus | .c | 1 to 558 | 2 to 559 | exact | tiling clone, capped | 558/558 (100 %) | 0 diff (100 %id) | |
DA416833 | thalamus | .a | 1382 to 1889 | 2 to 509 | capped | 508/508 (100 %) | 0 diff (100 %id) | ||
BX110646 | whole brain | .a | 5631 to 6052 | 435 to 15 | AAA | 421/421 (100 %) | 2 diff (99.6 %id) | ||
CD630386 | .a | 3163 to 3370 | 1 to 209 | 209/210 (99 %) | 3 diff (98.6 %id) | ||||
CD630387 | .a | 3143 to 3370 | 226 to 1 | 226/228 (99 %) | 2 diff (99.2 %id) | ||||
CD630388 | .a | 3143 to 3370 | 228 to 1 | 228/230 (99 %) | 0 diff (100 %id) | ||||
CD630389 | .a | 3141 to 3370 | 1 to 230 | 230/231 (99 %) | 2 diff (99.2 %id) | ||||
CD630390 | .a | 4846 to 4923 | 8 to 85 | 78/85 (91 %) | 0 diff (100 %id) | ||||
CD630391 | .a | 4846 to 5340 | 502 to 8 | 495/509 (97 %) | 0 diff (100 %id) | ||||
CN358129 | embryonic stem cells, cell lines H1, H7, andH9 | .a | 1151 to 1400 | 14 to 263 | 250/263 (95 %) | 7 diff (97.4 %id) | |||
CN358130 | embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 | .a | 3250 to 3623 | 1 to 374 | 374/374 (100 %) | 0 diff (100 %id) | |||
BX508482 | .a | 2647 to 3060 | 1 to 414 | 414/414 (100 %) | 2 diff (99.6 %id) | ||||
DB571737 | hypothalamus | .f | 251 to 713 | 1 to 464 | Submitted on the opposite strand | 464/464 (100 %) | 3 diff (99.4 %id) | ||
DB572726 | hypothalamus | .f | 1 to 713 | 1 to 712 | L5C P6Q K7R T8H L9W ... | tiling clone, | Submitted on the opposite strand | 712/712 (100 %) | 8 diff (98.9 %id) |
DA571405 | whole embryo, mainly head | .a | 4657 to 5398 | 11 to 754 | capped | 744/754 (98 %) | 10 diff (98.7 %id) | ||
DB358263 | whole embryo, mainly head | .a | 5473 to 6043 | 565 to 1 | tiling clone, | 565/567 (99 %) | 22 diff (96.2 %id) | ||
DA602344 | .a | 4197 to 4702 | 2 to 507 | capped | 506/506 (100 %) | 1 diff (99.9 %id) | |||
DC360013 | .b | 3025 to 3597 | 1 to 573 | tiling clone, | 573/573 (100 %) | 0 diff (100 %id) | |||
R12322 | whole brain | .a | 4739 to 5156 | 1 to 427 | 427/434 (98 %) | 18 diff (95.9 %id) | |||
R37251 | whole brain | .a | 5668 to 6060 | 405 to 2 | tiling clone, | 404/438 (92 %) | 23 diff (94.8 %id) | ||
R19806 | whole brain | .a | 3741 to 4105 | 1 to 369 | 369/369 (100 %) | 7 diff (98.2 %id) | |||
R45034 | whole brain | .a | 5747 to 6042 | 326 to 15 | AAA | 312/324 (96 %) | 17 diff (94.8 %id) | ||
R56444 | whole brain | .a | 4739 to 5165 | 1 to 435 | 435/440 (98 %) | 13 diff (97.1 %id) | |||
R56445 | whole brain | .a | 5652 to 6060 | 417 to 2 | 416/417 (99 %) | 13 diff (96.9 %id) | |||
R60911 | whole brain | .a | 5618 to 6043 | 453 to 10 | 444/495 (89 %) | 0 diff (100 %id) | |||
R61030 | whole brain | .a | 4405 to 4806 | 1 to 406 | 406/416 (97 %) | 5 diff (98.8 %id) | |||
R61161 | whole brain | .a | 938 to 1372 | 435 to 1 | Submitted on the opposite strand | 435/435 (100 %) | 8 diff (98.2 %id) | ||
H05498 | whole brain | .a | 5632 to 6046 | 435 to 5 | 431/446 (96 %) | 0 diff (100 %id) | |||
H12913 | whole brain | .a | 4478 to 4927 | 1 to 453 | 453/453 (100 %) | 8 diff (98.3 %id) | |||
H14981 | whole brain | .a | 4505 to 4893 | 1 to 392 | 392/392 (100 %) | 8 diff (98.0 %id) | |||
H14982 | whole brain | .a | 5647 to 6041 | 405 to 1 | 405/411 (98 %) | 20 diff (95.2 %id) | |||
AA424530 | mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus | .a | 5731 to 6043 | 329 to 17 | AAA | 313/313 (100 %) | 1 diff (99.7 %id) | ||
AA424596 | mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus | .a | 4453 to 4873 | 1 to 421 | 421/421 (100 %) | 2 diff (99.6 %id) | |||
AA614669 | breast | .a | 5571 to 6047 | 477 to 2 | 476/477 (99 %) | 0 diff (100 %id) | |||
AA974248 | pooled germ cell tumors | .a | 5705 to 6043 | 351 to 13 | AAA | 339/339 (100 %) | 2 diff (99.5 %id) | ||
AA993556 | .a | 5578 to 6043 | 478 to 13 | AAA | 466/466 (100 %) | 16 diff (96.6 %id) | |||
AI003491 | .a | 5851 to 6041 | 195 to 5 | 191/195 (97 %) | 0 diff (100 %id) | ||||
AI206155 | pooled germ cell tumors | .a | 99 to 519 | 1 to 421 | Submitted on the opposite strand | 421/421 (100 %) | 0 diff (100 %id) | ||
AI962561 | pooled germ cell tumors | .a | 99 to 526 | 1 to 428 | tiling clone, | Submitted on the opposite strand | 428/428 (100 %) | 0 diff (100 %id) | |
AW072763 | connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma | .a | 5609 to 6043 | 435 to 1 | 435/435 (100 %) | 1 diff (99.8 %id) | |||
AW316936 | brain, three pooled meningiomas | .a | 5642 to 6043 | 402 to 1 | 402/402 (100 %) | 1 diff (99.8 %id) | |||
BE645901 | Prostate | .a | 5788 to 6043 | 256 to 1 | 256/256 (100 %) | 1 diff (99.7 %id) | |||
BE311463 | Kidney, renal cell adenocarcinoma | .a | 4011 to 4585 | 1 to 576 | 576/771 (74 %) | 11 diff (98.6 %id) | |||
BC035257 | Skin, squamous cell carcinoma | .a | 4056 to 6043 | 1 to 1988 | tiling clone, available from MGC, AAA | 1988/1988 (100 %) | 5 diff (99.8 %id) | ||
BG681754 | skin, squamous cell carcinoma | .a | 4056 to 4734 | 1 to 677 | available from MGC, | 677/677 (100 %) | 4 diff (99.5 %id) | ||
BM903984 | eye, retinoblastoma | .a | 5448 to 6043 | 1 to 596 | tiling clone, | 596/641 (92 %) | 3 diff (99.6 %id) | ||
DA628295 | Kidney | .a | 4016 to 4568 | 2 to 554 | capped | 553/553 (100 %) | 1 diff (99.9 %id) | ||
T27123 | .a | 5664 to 6043 | 380 to 1 | 380/380 (100 %) | 4 diff (99.0 %id) | ||||
T27124 | .a | 4443 to 4768 | 1 to 326 | 326/326 (100 %) | 3 diff (99.1 %id) | ||||
NM_020777.2 | .a | 1 to 6060 | 1 to 6060 | exact | RefSeq, | 6060/6061 (99 %) | 5 diff (100.0 %id) | ||
DA710548 | .a | 3759 to 4308 | 2 to 551 | capped | 550/550 (100 %) | 0 diff (100 %id) | |||
DA781351 | brain | .a | 2999 to 3573 | 2 to 577 | capped | 576/577 (99 %) | 2 diff (99.7 %id) | ||
DA802980 | brain | .a | 1533 to 2089 | 2 to 558 | capped | 557/557 (100 %) | 2 diff (99.7 %id) | ||
DC378900 | pericardium | .d | 1 to 549 | 1 to 549 | exact | tiling clone, | 549/549 (100 %) | 1 diff (99.9 %id) | |
DB071935 | testis | .a | 2365 to 2911 | 2 to 549 | capped | 548/548 (100 %) | 3 diff (99.5 %id) | ||
DB118591 | thymus | .a | 3249 to 3802 | 2 to 555 | capped | 554/554 (100 %) | 1 diff (99.9 %id) | ||
DB127845 | thymus | .a | 2273 to 2816 | 2 to 545 | capped | 544/544 (100 %) | 0 diff (100 %id) | ||
TI_149298252 | .a | 5347 to 6040 | 774 to 84 | AAA | 691/836 (82 %) | 5 diff (99.5 %id) | |||
TI_149298723 | .a | 5332 to 6043 | 793 to 84 | AAA | 710/930 (76 %) | 5 diff (99.5 %id) | |||
DB219450 | trachea | .a | 1228 to 1780 | 2 to 554 | capped | 553/553 (100 %) | 0 diff (100 %id) | ||
BU684590 | lung, Primary Lung Cystic Fibrosis EpithelialCells | .a | 5407 to 6040 | 651 to 19 | AAA | 633/633 (100 %) | 3 diff (99.6 %id) | ||
BM975430 | lung, Primary Lung Cystic Fibrosis EpithelialCells | .a | 5341 to 6043 | 720 to 19 | AAA | 702/702 (100 %) | 3 diff (99.6 %id) | ||
BM690324 | eye, human retina | .a | 5005 to 5114 | 9 to 118 | 110/118 (93 %) | 6 diff (95.0 %id) | |||
BM698595 | eye, fetal eyes | .a | 4848 to 5311 | 1 to 465 | 465/465 (100 %) | 3 diff (99.4 %id) | |||
BU736234 | eye, fetal eyes | .a | 5522 to 6043 | 540 to 19 | AAA | 522/522 (100 %) | 2 diff (99.7 %id) | ||
BM718354 | eye, fetal eye | .a | 4514 to 5041 | 1 to 529 | tiling clone, | 529/529 (100 %) | 2 diff (99.7 %id) | ||
BU741938 | eye, fetal eye | .a | 5476 to 6044 | 587 to 19 | AAA | 569/569 (100 %) | 1 diff (99.9 %id) | ||
BM718422 | eye, fetal eye | .a | 4824 to 5216 | 1 to 393 | 393/393 (100 %) | 1 diff (99.8 %id) | |||
CA439255 | lung, Metastatic Chondrosarcoma | .a | 5478 to 6043 | 584 to 19 | AAA | 566/566 (100 %) | 2 diff (99.7 %id) | ||
BQ774499 | Chondrosarcoma Grade II, Left Pelvis | .a | 5515 to 6043 | 547 to 19 | AAA | 529/529 (100 %) | 4 diff (99.3 %id) | ||
CA432043 | cell lines, Enchondroma | .a | 5408 to 6043 | 653 to 19 | AAA | 635/635 (100 %) | 2 diff (99.7 %id) | ||
TI_151698401 | .a | 5479 to 6043 | 682 to 115 | AAA | 568/935 (60 %) | 16 diff (98.3 %id) | |||
TI_151760473 | .a | 5336 to 6043 | 790 to 85 | AAA | 706/894 (78 %) | 12 diff (98.7 %id) | |||
DB288328 | uterus | .a | 871 to 1426 | 2 to 557 | capped | 556/556 (100 %) | 1 diff (99.9 %id) | ||
AW904951 | nervous_normal | .a | 4848 to 5311 | 1 to 465 | 465/465 (100 %) | 3 diff (99.4 %id) | |||
DA096737 | cerebellum | .a | 5522 to 6043 | 540 to 19 | capped | 522/522 (100 %) | 2 diff (99.7 %id) | ||
DB298756 | cerebellum | .a | 5522 to 6043 | 540 to 19 | 522/522 (100 %) | 2 diff (99.7 %id) | |||
DA246297 | brain | .a | 4514 to 5041 | 1 to 529 | tiling clone, capped | 529/529 (100 %) | 2 diff (99.7 %id) | ||
DB306136 | brain | .a | 4514 to 5041 | 1 to 529 | tiling clone, | 529/529 (100 %) | 2 diff (99.7 %id) | ||
BU741938 | eye, fetal eye | .a | 5476 to 6044 | 587 to 19 | AAA | 569/569 (100 %) | 1 diff (99.9 %id) | ||
BU741938 | eye, fetal eye | .a | 5476 to 6044 | 587 to 19 | AAA | 569/569 (100 %) | 1 diff (99.9 %id) | ||
BM718422 | eye, fetal eye | .a | 4824 to 5216 | 1 to 393 | 393/393 (100 %) | 1 diff (99.8 %id) | |||
BM718422 | eye, fetal eye | .a | 4824 to 5216 | 1 to 393 | 393/393 (100 %) | 1 diff (99.8 %id) | |||
CA439255 | lung, Metastatic Chondrosarcoma | .a | 5478 to 6043 | 584 to 19 | AAA | 566/566 (100 %) | 2 diff (99.7 %id) | ||
CA439255 | lung, Metastatic Chondrosarcoma | .a | 5478 to 6043 | 584 to 19 | AAA | 566/566 (100 %) | 2 diff (99.7 %id) | ||
BQ774499 | Chondrosarcoma Grade II, Left Pelvis | .a | 5515 to 6043 | 547 to 19 | AAA | 529/529 (100 %) | 4 diff (99.3 %id) | ||
BQ774499 | Chondrosarcoma Grade II, Left Pelvis | .a | 5515 to 6043 | 547 to 19 | AAA | 529/529 (100 %) | 4 diff (99.3 %id) | ||
CA432043 | cell lines, Enchondroma | .a | 5408 to 6043 | 653 to 19 | AAA | 635/635 (100 %) | 2 diff (99.7 %id) | ||
CA432043 | cell lines, Enchondroma | .a | 5408 to 6043 | 653 to 19 | AAA | 635/635 (100 %) | 2 diff (99.7 %id) | ||
TI_151698401 | .a | 5479 to 6043 | 682 to 115 | AAA | 568/935 (60 %) | 16 diff (98.3 %id) | |||
TI_151760473 | .a | 5336 to 6043 | 790 to 85 | AAA | 706/894 (78 %) | 12 diff (98.7 %id) | |||
DB288328 | uterus | .a | 871 to 1426 | 2 to 557 | capped | 556/556 (100 %) | 1 diff (99.9 %id) |
? | Gene Summary | Gene on genome | mRNA:.a, .b, .c, .d, .e, .f | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes C |