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Gene SNX25TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
150 supporting clones for gene SNX25 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CD674045.
matches multiple genes
eye, lens .a 1 to 512 1 to 512   tiling clone, also hits gene chawzybo 512/512
(100 %)
11 diff
(97.9 %id)
DB457398.
matches multiple genes
testis .a 11 to 480 1 to 470   tiling clone, also hits gene UFSP2andLRP2BP 470/470
(100 %)
0 diff
(100 %id)
DB460453.
matches multiple genes
testis .a 11 to 488 1 to 478     also hits gene UFSP2andLRP2BP 478/478
(100 %)
5 diff
(99.0 %id)
DB453961.
matches multiple genes
testis .a 16 to 493 1 to 478     also hits gene UFSP2andLRP2BP 478/478
(100 %)
1 diff
(99.8 %id)
AI470613 Kidney .a 162 to 571 410 to 1   tiling clone,   410/410
(100 %)
1 diff
(99.8 %id)
DR004430 placenta .a 508 to 1077 1 to 570   tiling clone,   570/571
(99 %)
5 diff
(99.2 %id)
AW968034   .a 564 to 1244 7 to 687   tiling clone,   681/687
(99 %)
8 diff
(98.9 %id)
AW971665   .a 564 to 1199 7 to 639       633/639
(99 %)
6 diff
(99.1 %id)
NM_031953.2   .a 564 to 3760 1 to 3197   RefSeq, AAA   3197/3197
(100 %)
0 diff
(100 %id)
TI_154133386   .a 564 to 1233 54 to 724   tiling clone, Submitted on the opposite strand 671/987
(67 %)
20 diff
(98.0 %id)
TI_154133397   .a 564 to 1164 53 to 653     Submitted on the opposite strand 601/1166
(51 %)
7 diff
(99.4 %id)
TI_157596106   .a 564 to 1226 69 to 726     Submitted on the opposite strand 658/783
(84 %)
25 diff
(96.9 %id)
AW134876   .a 565 to 1115 1 to 551     Submitted on the opposite strand 551/551
(100 %)
1 diff
(99.9 %id)
AW135273   .a 565 to 1025 1 to 461     Submitted on the opposite strand 461/461
(100 %)
2 diff
(99.6 %id)
AW205795   .a 565 to 958 1 to 395     Submitted on the opposite strand 395/395
(100 %)
2 diff
(99.5 %id)
AW575775 lymph .a 565 to 991 1 to 427     Submitted on the opposite strand 427/433
(98 %)
2 diff
(99.6 %id)
AW575789 lymph .a 565 to 1052 1 to 488     Submitted on the opposite strand 488/488
(100 %)
0 diff
(100 %id)
AI373180 B-cell, chronic lymphotic leukemia .a 582 to 1147 1 to 566     Submitted on the opposite strand 566/566
(100 %)
2 diff
(99.7 %id)
AI538479 B-cell, chronic lymphotic leukemia .a 582 to 1067 1 to 486     Submitted on the opposite strand 486/486
(100 %)
0 diff
(100 %id)
AA910050 pooled .a 583 to 1063 1 to 480     Submitted on the opposite strand 480/480
(100 %)
5 diff
(99.0 %id)
AI242694 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 595 to 1047 1 to 453     Submitted on the opposite strand 453/453
(100 %)
2 diff
(99.6 %id)
AI382288 B-cell, chronic lymphotic leukemia .a 595 to 903 1 to 309     Submitted on the opposite strand 309/309
(100 %)
0 diff
(100 %id)
AI494638 B-cell, chronic lymphotic leukemia .a 595 to 1040 1 to 446     Submitted on the opposite strand 446/446
(100 %)
7 diff
(98.5 %id)
AI383779 B-cell, chronic lymphotic leukemia .a 595 to 779 1 to 185     Submitted on the opposite strand 185/185
(100 %)
0 diff
(100 %id)
AI538518 B-cell, chronic lymphotic leukemia .a 595 to 1072 1 to 478     Submitted on the opposite strand 478/478
(100 %)
4 diff
(99.2 %id)
AI400002 B-cell, chronic lymphotic leukemia .a 595 to 1059 1 to 465     Submitted on the opposite strand 465/465
(100 %)
1 diff
(99.8 %id)
AI568344 B-cell, chronic lymphotic leukemia .a 595 to 1046 1 to 452     Submitted on the opposite strand 452/452
(100 %)
1 diff
(99.8 %id)
AI568365 B-cell, chronic lymphotic leukemia .a 595 to 1060 1 to 466     Submitted on the opposite strand 466/466
(100 %)
1 diff
(99.8 %id)
AI763229 B-cell, chronic lymphotic leukemia .a 595 to 1014 1 to 420     Submitted on the opposite strand 420/420
(100 %)
2 diff
(99.6 %id)
AW167846 cervix .a 595 to 1065 1 to 471     Submitted on the opposite strand 471/471
(100 %)
0 diff
(100 %id)
AW340059 pooled .a 599 to 1064 1 to 466     Submitted on the opposite strand 466/466
(100 %)
0 diff
(100 %id)
AI762831 B-cell, chronic lymphotic leukemia .a 614 to 1106 1 to 492     Submitted on the opposite strand 492/492
(100 %)
2 diff
(99.6 %id)
AA993905 pooled .a 616 to 974 1 to 356     Submitted on the opposite strand 356/356
(100 %)
5 diff
(98.6 %id)
AI219808 pooled .a 616 to 1055 1 to 440     Submitted on the opposite strand 440/440
(100 %)
0 diff
(100 %id)
AI382255 B-cell, chronic lymphotic leukemia .a 616 to 876 1 to 261     Submitted on the opposite strand 261/262
(99 %)
2 diff
(99.3 %id)
AA740888 germinal center B cell .a 622 to 988 1 to 365     Submitted on the opposite strand 365/365
(100 %)
2 diff
(99.5 %id)
AA906501 pooled .a 632 to 1163 1 to 528     Submitted on the opposite strand 528/621
(85 %)
14 diff
(97.8 %id)
AA767494 germinal center B cell .a 645 to 874 1 to 229     Submitted on the opposite strand 229/229
(100 %)
4 diff
(98.3 %id)
AY601647   .b 1 to 3316 1 to 3316 exact tiling clone,   3316/3316
(100 %)
6 diff
(99.9 %id)
BM554003 brain, medulla .b 1 to 970 1 to 972       972/999
(97 %)
17 diff
(98.3 %id)
AA262935 germinal center B cell .b 233 to 443 1 to 212     Submitted on the opposite strand 212/212
(100 %)
1 diff
(99.6 %id)
BX508898   .b 275 to 1027 1 to 751       751/751
(100 %)
2 diff
(99.8 %id)
CD702683 normal nasopharynx .b 297 to 852 12 to 568       557/568
(98 %)
9 diff
(98.5 %id)
AA809395 germinal center B cell .b 339 to 511 1 to 173     Submitted on the opposite strand 173/173
(100 %)
1 diff
(99.5 %id)
AA252690 germinal center B cell .b 380 to 798 419 to 1     Submitted on the opposite strand 419/419
(100 %)
0 diff
(100 %id)
BU602631 mixed (pool of 40 RNAs) .b 495 to 1224 1 to 743       741/821
(90 %)
15 diff
(98.2 %id)
BE836765 prostate_normal .b 532 to 860 330 to 1       330/574
(57 %)
1 diff
(99.9 %id)
EL950846 eyeball .b 575 to 1121 1 to 547       547/547
(100 %)
3 diff
(99.5 %id)
AK095661 brain .b 597 to 3316 1 to 2720   available from FLJ,   2720/2720
(100 %)
4 diff
(99.9 %id)
DA511168 brain .b 598 to 1151 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
BQ349974 head_neck .b 892 to 1386 9 to 509       501/509
(98 %)
27 diff
(94.7 %id)
CA394234 eye, RPE/choroid .b 969 to 1130 1 to 162       162/162
(100 %)
1 diff
(99.4 %id)
BX951557   .b 1078 to 1756 1 to 679       679/679
(100 %)
0 diff
(100 %id)
BI829860 brain, medulla .b 1082 to 1396 1 to 314       314/314
(100 %)
9 diff
(97.2 %id)
AF113223 heart .b 1116 to 3302 1 to 2187   tiling clone, AAA   2187/2187
(100 %)
0 diff
(100 %id)
BG998323 head_neck .b 1177 to 1425 1 to 248       248/258
(96 %)
11 diff
(95.8 %id)
AY044656   .b 1201 to 2817 1 to 1617       1617/1617
(100 %)
0 diff
(100 %id)
AA383818 testis .b 1222 to 1543 1 to 323       323/323
(100 %)
3 diff
(99.1 %id)
AW966425   .b 1245 to 1848 1 to 602       602/629
(95 %)
18 diff
(97.2 %id)
DA748541   .b 1245 to 1825 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
AA235895 germinal center B cell .b 1401 to 1604 1 to 204       204/204
(100 %)
2 diff
(99.1 %id)
DB254921 uterus .b 1432 to 2002 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
AA481564 germinal center B cell .b 1449 to 1853 1 to 405       405/405
(100 %)
0 diff
(100 %id)
DR762133 embryonic stem .b 1468 to 2259 1 to 793       793/793
(100 %)
5 diff
(99.4 %id)
BU183993 melanotic melanoma, skin .b 1469 to 2269 1 to 805       805/843
(95 %)
9 diff
(99.0 %id)
DA812091 ovary, tumor tissue .b 1539 to 2269 2 to 732   capped   731/735
(99 %)
4 diff
(99.5 %id)
ES311371 frontal balding hair, skin .b 1564 to 1700 1 to 137       137/137
(100 %)
0 diff
(100 %id)
BP277533 Kidney .b 1574 to 1933 1 to 360       360/580
(62 %)
8 diff
(98.7 %id)
BF247668 hypernephroma, Kidney .b 1607 to 1989 1 to 381       381/770
(49 %)
6 diff
(99.3 %id)
CD251526 brain, Pituitary .b 1631 to 2384 1 to 755       755/852
(88 %)
6 diff
(99.3 %id)
FN087895 breast carcinoma .b 1633 to 1743 111 to 1     Submitted on the opposite strand 111/113
(98 %)
0 diff
(100 %id)
BQ228664 melanotic melanoma, skin .b 1736 to 2453 1 to 719       719/908
(79 %)
3 diff
(99.7 %id)
TI_57152197   .b 1872 to 2671 35 to 834       800/834
(95 %)
11 diff
(98.7 %id)
BI763551 pooled colon, kidney, stomach .b 1874 to 2671 1 to 798       798/798
(100 %)
5 diff
(99.4 %id)
BG539833 lung .b 2035 to 2686 1 to 649       650/649
(100 %)
9 diff
(98.7 %id)
BM172005 lung .b 2035 to 2552 1 to 519       519/519
(100 %)
10 diff
(98.1 %id)
CA868043 Pancreas, Purified pancreatic islet .b 2036 to 2579 1 to 544       544/544
(100 %)
0 diff
(100 %id)
CB112931 Liver .b 2086 to 2644 1 to 559       559/559
(100 %)
0 diff
(100 %id)
BF244679 brain, glioblastoma .b 2088 to 2635 1 to 539       539/718
(75 %)
15 diff
(98.0 %id)
BF671098 muscle (skeletal) .b 2118 to 2720 1 to 599       599/845
(70 %)
24 diff
(97.2 %id)
BF692461 melanotic melanoma, high MDR, skin .b 2149 to 2836 1 to 688       688/846
(81 %)
14 diff
(98.4 %id)
CN365750 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 2265 to 2955 1 to 691       691/691
(100 %)
0 diff
(100 %id)
W03011 melanocyte .b 2368 to 2935 1 to 579       579/586
(98 %)
19 diff
(96.8 %id)
BG026518 Bone, osteosarcoma, cell line .b 2373 to 3122 1 to 741       741/980
(75 %)
25 diff
(97.5 %id)
TI_149310198   .b 2399 to 3316 991 to 90   AAA   902/979
(92 %)
27 diff
(97.3 %id)
AA365838 pineal body .b 2428 to 2735 1 to 311       311/311
(100 %)
5 diff
(98.4 %id)
AW962422   .b 2429 to 3099 1 to 666       666/666
(100 %)
10 diff
(98.5 %id)
BU567579 testis .b 2460 to 3269 1 to 818       818/819
(99 %)
15 diff
(98.2 %id)
BU568184 testis .b 2460 to 3183 1 to 724       724/724
(100 %)
3 diff
(99.6 %id)
AA130263 uterus .b 2462 to 2907 1 to 446       446/446
(100 %)
0 diff
(100 %id)
FN068641 breast carcinoma .b 2472 to 2559 1 to 88       88/89
(98 %)
1 diff
(98.9 %id)
BF980382 testis .b 2481 to 3203 757 to 38       720/1024
(70 %)
22 diff
(97.9 %id)
BM472439 embryonal carcinoma, cell line, testis .b 2509 to 3309 1 to 801   AAA   801/801
(100 %)
0 diff
(100 %id)
TI_154110282   .b 2515 to 3322 878 to 76   AAA   803/940
(85 %)
5 diff
(99.5 %id)
BG563820 Liver .b 2542 to 3091 1 to 553       550/553
(99 %)
5 diff
(99.1 %id)
BG567520 Liver .b 2542 to 3287 1 to 748       748/892
(83 %)
14 diff
(98.5 %id)
BG567189 Liver .b 2542 to 3310 1 to 764       764/825
(92 %)
18 diff
(97.9 %id)
BG617948 Liver .b 2542 to 3309 1 to 766       766/768
(99 %)
7 diff
(99.1 %id)
CA429206 Cell Line, Chondrosarcoma .b 2563 to 3316 772 to 19   AAA   754/754
(100 %)
0 diff
(100 %id)
TI_154150890   .b 2570 to 3316 839 to 93   AAA Submitted on the opposite strand 747/747
(100 %)
8 diff
(99.0 %id)
R81452 placenta .b 2574 to 2945 1 to 385       385/385
(100 %)
13 diff
(96.7 %id)
BQ008931 Chondrosarcoma, Left Pelvis .b 2581 to 3316 747 to 12   AAA   736/736
(100 %)
0 diff
(100 %id)
BU688527 lung .b 2630 to 3316 705 to 19   AAA   687/688
(99 %)
5 diff
(99.3 %id)
CN479572 Chondrosarcoma, Left Pubic Bone .b 2672 to 3316 663 to 19   AAA   645/645
(100 %)
0 diff
(100 %id)
BQ301176 bocio_tumor .b 2674 to 2979 7 to 311       305/311
(98 %)
6 diff
(98.1 %id)
BQ301172 bocio_tumor .b 2679 to 2979 1 to 300       300/300
(100 %)
8 diff
(97.4 %id)
BQ301269 bocio_tumor .b 2682 to 2981 303 to 6       298/303
(98 %)
1 diff
(99.7 %id)
AW962423   .b 2698 to 3085 269 to 655       387/671
(57 %)
16 diff
(97.7 %id)
CU443408 epidermis .b 2709 to 3225 535 to 18     Submitted on the opposite strand 518/538
(96 %)
4 diff
(99.3 %id)
ES314927 occipital scalp hair, skin .b 2723 to 2877 1 to 155       155/155
(100 %)
0 diff
(100 %id)
TI_149286567   .b 2728 to 3318 744 to 152   AAA   593/843
(70 %)
0 diff
(100 %id)
BM504976 Pancreas, Purified pancreatic islet .b 2759 to 3246 1 to 488       488/488
(100 %)
0 diff
(100 %id)
DB316316 brain .b 2764 to 3316 553 to 1       553/553
(100 %)
0 diff
(100 %id)
DB371385 ovary, tumor tissue .b 2787 to 3316 525 to 1       525/537
(97 %)
17 diff
(96.9 %id)
AI129945 uterus .b 2836 to 3316 481 to 1       481/481
(100 %)
0 diff
(100 %id)
AW008976 colon .b 2836 to 3318 484 to 2       483/485
(99 %)
0 diff
(100 %id)
BM504651 Pancreas, Purified pancreatic islet .b 2850 to 3315 466 to 1       466/466
(100 %)
0 diff
(100 %id)
CA868291 Pancreas, Purified pancreatic islet .b 2880 to 3316 448 to 12   AAA   437/437
(100 %)
0 diff
(100 %id)
AW316756 brain, three pooled meningiomas .b 2908 to 3318 411 to 1       411/411
(100 %)
0 diff
(100 %id)
EC458255 Prostate .b 2965 to 3075 1 to 111       111/111
(100 %)
0 diff
(100 %id)
AA705542 liver and spleen .b 3002 to 3309 308 to 1       308/308
(100 %)
0 diff
(100 %id)
AW768431 lymph node, lymphoma, follicular mixed small and largecell .b 3008 to 3318 312 to 1       312/312
(100 %)
3 diff
(99.1 %id)
N72268 melanocyte .b 3012 to 3316 319 to 15   AAA   305/305
(100 %)
0 diff
(100 %id)
FN070466 breast carcinoma .b 3034 to 3108 1 to 74       74/75
(98 %)
2 diff
(97.4 %id)
AA626308 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3059 to 3323 273 to 9   tiling clone,   265/273
(97 %)
0 diff
(100 %id)
AA627829 colon, colon tumor RER+ .b 3062 to 3316 255 to 1       255/255
(100 %)
0 diff
(100 %id)
AI498087 anaplastic oligodendroglioma, brain .b 3066 to 3316 276 to 26   AAA   251/251
(100 %)
9 diff
(96.5 %id)
AW021667 cochlea, ear .b 3070 to 3322 1 to 253   AAA   253/253
(100 %)
5 diff
(98.1 %id)
TI_57176435   .c 1 to 637 27 to 660   tiling clone,   634/660
(96 %)
16 diff
(97.6 %id)
BC029868 Brain, adult medulla .c 2 to 1937 1 to 1936 exact tiling clone, available from MGC, AAA   1936/1936
(100 %)
1 diff
(100.0 %id)
DA766741 tongue .d 1 to 578 2 to 579   tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
CN365749 embryonic stem cells, cell lines H1, H7, andH9 .d 240 to 932 1 to 693   tiling clone,   693/695
(99 %)
6 diff
(99.2 %id)
AK026814 Human lung .d 343 to 2204 1 to 1862 exact tiling clone, available from FLJ, AAA   1862/1862
(100 %)
3 diff
(99.9 %id)
BP292956 lung .d 343 to 923 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
AL600882   .d 414 to 1010 1 to 597       597/597
(100 %)
3 diff
(99.5 %id)
AI678047 pooled .e 1 to 518 1 to 518 exact tiling clone, Submitted on the opposite strand 518/518
(100 %)
0 diff
(100 %id)
BE676641 B-cell, chronic lymphotic leukemia .e 1 to 487 1 to 487 exact   Submitted on the opposite strand 487/487
(100 %)
0 diff
(100 %id)
BX337133 Placenta Cot 25-normalized .e 459 to 1416 957 to 1   tiling clone, Submitted on the opposite strand 957/957
(100 %)
9 diff
(99.1 %id)
DB118666 thymus .f 1 to 546 2 to 548   tiling clone, capped   547/547
(100 %)
2 diff
(99.7 %id)
BX089403 melanocyte .f 486 to 1233 1 to 751 F79X L84X V85G Y86L Y87L ... tiling clone,   751/751
(100 %)
5 diff
(99.4 %id)
T93735.
matches multiple genes
lung .g 1 to 314 1 to 320   tiling clone, also hits gene PEPD 320/343
(93 %)
11 diff
(96.8 %id)
T96242.
matches multiple genes
lung .g 77 to 401 340 to 12 T2P W9L M10D R11E K13E ... tiling clone, also hits gene klupleeby 329/365
(90 %)
8 diff
(97.9 %id)
DB161639 thymus .h-u 1 to 566 2 to 567 exact tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
AI092008 parathyroid gland, parathyroid tumor .i-u 1 to 458 473 to 16 T35I tiling clone,   458/473
(96 %)
0 diff
(100 %id)
AA725451 parathyroid gland, parathyroid tumor .i-u 50 to 458 425 to 16 S23T T35Y T36H P37T tiling clone,   410/425
(96 %)
0 diff
(100 %id)
BI027091 marrow .j-u 1 to 393 7 to 399 P2R A3Q R4G tiling clone,   393/399
(98 %)
6 diff
(98.5 %id)
BI026910 marrow .j-u 13 to 408 14 to 409   tiling clone,   396/409
(96 %)
6 diff
(98.6 %id)
BQ319630 colon .j-u 35 to 433 4 to 405   tiling clone,   402/405
(99 %)
6 diff
(98.6 %id)
AV647824 corresponding non cancerous liver tissue Gene SNX25, variant not shown         Submitted on the opposite strand    
T84453 liver and spleen Gene SNX25, variant not shown         This clone was ignored    
T88903 liver and spleen Gene SNX25, variant not shown         This clone was ignored    
T94814 lung Gene SNX25, variant not shown         This clone was ignored    
T94815 lung Gene SNX25, variant not shown         This clone was ignored    
H99959 melanocyte Gene SNX25, variant not shown         This clone was ignored    
N28333 melanocyte Gene SNX25, variant not shown         This clone was ignored    
AW274695 pooled Gene SNX25, variant not shown         Submitted on the opposite strand    
DB223958 trachea Gene SNX25, variant not shown       capped This clone was ignored    
DB349573 trachea Gene SNX25, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i-u, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C