To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene SNAPC5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
285 supporting clones for gene SNAPC5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA230975 brain -u 1 to 572 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
DA460251 tongue, tumor tissue -u 1 to 557 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB088432 testis -u 4 to 575 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA403897 thalamus -u 41 to 587 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA992467 synovial membrane tissue from rheumatioidarthritis -u 41 to 596 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA860449 placenta -u 49 to 614 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA115100 cerebellum -u 53 to 624 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA109933 cerebellum -u 74 to 621 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
AA449210   -u 122 to 377 1 to 255       255/255
(100 %)
2 diff
(99.3 %id)
AA528294   -u 397 to 888 21 to 511   tiling clone,   491/542
(90 %)
27 diff
(95.1 %id)
AA449211   -u 984 to 1250 252 to 1   tiling clone,   252/252
(100 %)
7 diff
(97.3 %id)
DB450988.
matches multiple genes
testis SNAPC5.b 1 to 474 1 to 474 T101N G122X tiling clone, also hits gene MAP2K1 474/474
(100 %)
1 diff
(99.8 %id)
BG723600 testis SNAPC5.b 37 to 778 1 to 740 exact available from MGC,   740/740
(100 %)
6 diff
(99.2 %id)
BC066984 testis SNAPC5.b 42 to 1075 1 to 1034 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 1034/1034
(100 %)
1 diff
(100.0 %id)
BU685315 lung, Primary Lung Epithelial Cells SNAPC5.b 309 to 1075 784 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 766/766
(100 %)
6 diff
(99.3 %id)
TI_154131908   SNAPC5.b 336 to 1075 827 to 88   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 740/762
(97 %)
1 diff
(99.9 %id)
CA418339 Bone, Human Chondrosarcoma Cell Line SNAPC5.b 340 to 1075 754 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 736/736
(100 %)
1 diff
(99.9 %id)
TI_149281015   SNAPC5.b 383 to 1075 771 to 80   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 692/692
(100 %)
2 diff
(99.8 %id)
BM985116 lung SNAPC5.b 384 to 1075 709 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 691/691
(100 %)
1 diff
(99.9 %id)
CA391748 eye, RPE/choroid SNAPC5.b 391 to 936 1 to 546       546/546
(100 %)
0 diff
(100 %id)
BU679510 lung, Primary Lung Epithelial Cells SNAPC5.b 447 to 1075 646 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 628/628
(100 %)
1 diff
(99.9 %id)
BQ333202 lung_tumor SNAPC5.b 703 to 918 1 to 214       214/214
(100 %)
10 diff
(95.4 %id)
AI291896 placenta SNAPC5.b 761 to 1075 342 to 28   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 315/315
(100 %)
10 diff
(96.9 %id)
DT219578 brain SNAPC5.c 1 to 626 1 to 626 exact tiling clone,   626/629
(99 %)
3 diff
(99.6 %id)
BM710223 eye, optic nerve SNAPC5.c 17 to 296 1 to 280   fully sequenced,   280/280
(100 %)
0 diff
(100 %id)
BF093297 testis_normal SNAPC5.c 28 to 599 20 to 588 R17G L18*     569/588
(96 %)
10 diff
(98.3 %id)
BI550046 brain, hippocampus SNAPC5.c 29 to 617 1 to 589 exact     589/590
(99 %)
6 diff
(99.0 %id)
BP373991 umbilical cord SNAPC5.c 31 to 613 1 to 581 exact     581/581
(100 %)
2 diff
(99.7 %id)
DA080523 cerebellum SNAPC5.c 32 to 598 2 to 568 exact capped   567/567
(100 %)
0 diff
(100 %id)
DA220254 brain SNAPC5.c 32 to 595 2 to 565 exact capped   564/564
(100 %)
0 diff
(100 %id)
BG702485 brain, hippocampus SNAPC5.c 32 to 856 1 to 831 exact     831/832
(99 %)
13 diff
(98.5 %id)
DB272974 uterus SNAPC5.c 32 to 595 2 to 565 exact capped   564/564
(100 %)
0 diff
(100 %id)
DB443961 testis SNAPC5.c 34 to 481 1 to 448 exact     448/448
(100 %)
0 diff
(100 %id)
TI_44169565   SNAPC5.c 34 to 617 91 to 674 exact     584/675
(86 %)
1 diff
(99.9 %id)
DA370576 thalamus SNAPC5.c 35 to 599 2 to 567 L49X S50V S51F H52S T53H ... capped   566/566
(100 %)
1 diff
(99.9 %id)
BG715018 brain, hypothalamus SNAPC5.c 36 to 771 8 to 748 exact     741/749
(98 %)
7 diff
(99.1 %id)
AV764597 bone marrow SNAPC5.c 37 to 523 1 to 487 exact     487/662
(73 %)
20 diff
(97.0 %id)
DA949076 Spleen SNAPC5.c 38 to 587 2 to 551 exact capped   550/550
(100 %)
0 diff
(100 %id)
DA577431   SNAPC5.c 39 to 602 2 to 565 exact capped   564/564
(100 %)
0 diff
(100 %id)
AI557062 Prostate SNAPC5.c 43 to 820 6 to 782 R17G L18*   Submitted on the opposite strand 777/904
(85 %)
15 diff
(98.4 %id)
BU658031 blood SNAPC5.c 44 to 548 1 to 506 exact     506/506
(100 %)
4 diff
(99.3 %id)
BQ639459 eye, retina SNAPC5.c 45 to 548 1 to 504 exact     504/504
(100 %)
0 diff
(100 %id)
BP216335 corpus callosum SNAPC5.c 46 to 626 1 to 581 K19R     581/582
(99 %)
3 diff
(99.5 %id)
BF210429 bone marrow, from chronic myelogenous leukemia SNAPC5.c 46 to 614 1 to 567 L2E S3P R4V L5Q Q6E ...     565/881
(64 %)
48 diff
(94.6 %id)
TI_44000812   SNAPC5.c 49 to 941 80 to 969 exact     890/984
(90 %)
20 diff
(98.0 %id)
BM746613 Ascites, stomach SNAPC5.c 49 to 682 1 to 625 E11R E12G E13G T14D L15A ...     625/625
(100 %)
6 diff
(99.1 %id)
BG036947 brain, hypothalamus SNAPC5.c 50 to 702 1 to 654 E94R E95R S96I D97R S98F     654/654
(100 %)
10 diff
(98.5 %id)
BI544642 brain, hippocampus SNAPC5.c 50 to 941 1 to 889 exact     889/904
(98 %)
23 diff
(97.5 %id)
DA925659 small intestine SNAPC5.c 50 to 638 2 to 590 L49P capped   589/589
(100 %)
1 diff
(99.9 %id)
BG764762 melanotic melanoma, high MDR (cell line), skin SNAPC5.c 51 to 603 1 to 553 exact AAA   553/553
(100 %)
1 diff
(99.9 %id)
CR975156 T-Lymphocytes SNAPC5.c 51 to 784 1 to 733 exact     733/733
(100 %)
2 diff
(99.8 %id)
BU861004 mixed (pool of 40 RNAs) SNAPC5.c 52 to 801 1 to 758 exact     758/832
(91 %)
26 diff
(96.9 %id)
DA148525 amygdala SNAPC5.c 53 to 625 2 to 574 exact capped   573/573
(100 %)
0 diff
(100 %id)
DN992129 brain, whole brain SNAPC5.c 53 to 821 10 to 777 exact     768/777
(98 %)
0 diff
(100 %id)
AV714566   SNAPC5.c 55 to 660 1 to 596 exact     596/596
(100 %)
4 diff
(99.4 %id)
CD050973 embryonic trophoblasts, made from WA01 stemcells SNAPC5.c 61 to 889 15 to 849 Q57L     835/891
(93 %)
10 diff
(98.9 %id)
BX394388 Neuroblastoma Cot 25-normalized SNAPC5.c 63 to 1036 25 to 994 exact tiling clone,   970/994
(97 %)
5 diff
(99.5 %id)
DB010076 colon, tumor tissue SNAPC5.c 64 to 558 2 to 496 exact capped   495/495
(100 %)
0 diff
(100 %id)
BI553813 brain, hippocampus SNAPC5.c 66 to 797 1 to 733 exact     733/733
(100 %)
8 diff
(99.0 %id)
TI_44168161   SNAPC5.c 71 to 797 86 to 813 exact     728/813
(89 %)
4 diff
(99.6 %id)
BM479742 eye, retinoblastoma SNAPC5.c 72 to 1004 1 to 933 exact     933/1076
(86 %)
14 diff
(98.7 %id)
AA256453 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus SNAPC5.c 73 to 340 15 to 283       269/283
(95 %)
4 diff
(98.6 %id)
BM918152 blood, natural killer cells, cell line SNAPC5.c 74 to 997 21 to 950 exact tiling clone,   930/1038
(89 %)
24 diff
(97.7 %id)
CN360861 embryonic stem cells, cell lines H1, H7, andH9 SNAPC5.c 79 to 821 1 to 744 K10R E11G     744/744
(100 %)
4 diff
(99.5 %id)
DA765799 tongue SNAPC5.c 80 to 626 2 to 544 exact capped   543/544
(99 %)
4 diff
(99.3 %id)
BX102496 parathyroid gland, parathyroid tumor SNAPC5.c 83 to 855 1 to 773 exact     773/773
(100 %)
0 diff
(100 %id)
W39639 parathyroid gland, parathyroid tumor SNAPC5.c 83 to 481 1 to 411 L18X E86D E87X E88X E89R ...     411/411
(100 %)
11 diff
(97.4 %id)
DB268531 uterus SNAPC5.c 84 to 597 2 to 515 exact capped   514/514
(100 %)
1 diff
(99.9 %id)
AI809244 pooled SNAPC5.c 86 to 684 601 to 3 Q25S L26X     599/601
(99 %)
2 diff
(99.7 %id)
BU506504 mixed (pool of 40 RNAs) SNAPC5.c 88 to 592 1 to 506       506/864
(58 %)
17 diff
(98.1 %id)
BF000130 colon, colon tumor, RER+ SNAPC5.c 101 to 673 563 to 1       563/563
(100 %)
8 diff
(98.6 %id)
BF131659 hypernephroma, Kidney SNAPC5.c 105 to 637 1 to 540       540/908
(59 %)
16 diff
(98.3 %id)
AW381162 head_neck SNAPC5.c 113 to 697 1 to 589       589/589
(100 %)
8 diff
(98.7 %id)
CB160309 Liver SNAPC5.c 120 to 683 1 to 566       566/566
(100 %)
2 diff
(99.7 %id)
AA188004   SNAPC5.c 123 to 446 1 to 331   fully sequenced,   331/331
(100 %)
10 diff
(97.0 %id)
BF791838 adrenal cortex carcinoma, cell line, adrenal gland SNAPC5.c 124 to 907 1 to 788       788/1087
(72 %)
19 diff
(98.3 %id)
BQ011479 placenta SNAPC5.c 164 to 606 461 to 19   AAA   443/443
(100 %)
1 diff
(99.8 %id)
TI_227713853   SNAPC5.c 176 to 1000 904 to 87   tiling clone, AAA   818/983
(83 %)
10 diff
(99.0 %id)
BM452232 melanotic melanoma, skin SNAPC5.c 200 to 1005 1 to 805       805/817
(98 %)
10 diff
(98.8 %id)
AI633709 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus SNAPC5.c 206 to 999 795 to 1       793/795
(99 %)
12 diff
(98.5 %id)
AW381171 head_neck SNAPC5.c 209 to 705 1 to 497       497/500
(99 %)
17 diff
(96.6 %id)
BF510377   SNAPC5.c 210 to 672 470 to 18   AAA   453/453
(100 %)
4 diff
(99.2 %id)
AW961981   SNAPC5.c 223 to 751 1 to 529       529/536
(98 %)
35 diff
(93.5 %id)
BM671639 eye, optic nerve SNAPC5.c 235 to 682 466 to 19   fully sequenced, AAA   448/448
(100 %)
1 diff
(99.8 %id)
AW135149   SNAPC5.c 242 to 672 448 to 18   AAA   431/431
(100 %)
2 diff
(99.6 %id)
AW137186   SNAPC5.c 250 to 672 440 to 18   AAA   423/423
(100 %)
0 diff
(100 %id)
CD364609 Alveolar Macrophage, lung SNAPC5.c 254 to 1000 764 to 19   AAA   746/746
(100 %)
1 diff
(99.9 %id)
AI394454 brain, glioblastoma (pooled) SNAPC5.c 255 to 672 418 to 1       418/418
(100 %)
0 diff
(100 %id)
AI968497 pooled germ cell tumors SNAPC5.c 266 to 675 410 to 1       410/416
(98 %)
0 diff
(100 %id)
AW804951 uterus SNAPC5.c 271 to 595 338 to 14       325/338
(96 %)
6 diff
(98.3 %id)
AA926802 pooled germ cell tumors SNAPC5.c 291 to 614 324 to 1       324/324
(100 %)
0 diff
(100 %id)
AL120781 melanoma (MeWo cell line) SNAPC5.c 303 to 828 1 to 526       526/526
(100 %)
0 diff
(100 %id)
TI_149289501   SNAPC5.c 306 to 1000 775 to 82   AAA   694/695
(99 %)
3 diff
(99.6 %id)
TI_149275719   SNAPC5.c 312 to 1000 802 to 115   AAA   688/988
(69 %)
3 diff
(99.7 %id)
AW303591 pooled SNAPC5.c 319 to 786 27 to 494     Submitted on the opposite strand 468/494
(94 %)
0 diff
(100 %id)
BU676771 lung, Primary Lung Epithelial Cells SNAPC5.c 319 to 1000 696 to 16   AAA   681/681
(100 %)
3 diff
(99.6 %id)
BU632612 cell lines, Chondrosarcoma SNAPC5.c 319 to 1000 699 to 19   AAA   681/681
(100 %)
2 diff
(99.8 %id)
CB529647 Aveolar Macrophage, lung SNAPC5.c 319 to 999 696 to 17   AAA   680/680
(100 %)
2 diff
(99.8 %id)
AI916195 colon, colon tumor, RER+ SNAPC5.c 322 to 740 409 to 1       409/409
(100 %)
4 diff
(99.1 %id)
BU681656 lung SNAPC5.c 326 to 1000 692 to 19   AAA   674/674
(100 %)
2 diff
(99.8 %id)
N42892.
matches multiple genes
melanocyte SNAPC5.c 335 to 641 1 to 307     Submitted on the opposite strand, also hits gene KLF9 307/307
(100 %)
0 diff
(100 %id)
AA588029 colon, colon tumor RER+ SNAPC5.c 341 to 746 397 to 1       397/397
(100 %)
8 diff
(98.0 %id)
CA503087 Human Lung Epithelial cells, lung SNAPC5.c 356 to 999 661 to 19   AAA   643/643
(100 %)
3 diff
(99.6 %id)
BQ772815 Chondrosarcoma Cell line SNAPC5.c 377 to 1000 636 to 16   AAA   621/621
(100 %)
3 diff
(99.6 %id)
BU690035 Human Lung Epithelial cells, lung SNAPC5.c 393 to 1000 625 to 19   AAA   607/607
(100 %)
3 diff
(99.6 %id)
H00857 placenta SNAPC5.c 396 to 727 1 to 337   fully sequenced,   337/337
(100 %)
8 diff
(97.7 %id)
BQ050316 leiomyosarcoma, uterus SNAPC5.c 397 to 1000 20 to 624       605/1148
(52 %)
4 diff
(99.7 %id)
BP419783 small intestine SNAPC5.c 405 to 896 1 to 492     Submitted on the opposite strand 492/492
(100 %)
1 diff
(99.8 %id)
N20926 melanocyte SNAPC5.c 407 to 1004 599 to 1       599/599
(100 %)
13 diff
(97.9 %id)
AA188005   SNAPC5.c 416 to 1001 589 to 2   fully sequenced,   588/589
(99 %)
0 diff
(100 %id)
AA229771   SNAPC5.c 467 to 746 286 to 7       280/286
(97 %)
0 diff
(100 %id)
BE550666 carcinoid, lung SNAPC5.c 470 to 996 526 to 1       526/526
(100 %)
2 diff
(99.7 %id)
AW572891 pooled SNAPC5.c 474 to 1001 529 to 3       527/529
(99 %)
0 diff
(100 %id)
BM913681 astrocytoma grade IV, cell line, brain SNAPC5.c 477 to 1000 1 to 523   AAA   523/523
(100 %)
2 diff
(99.7 %id)
AA968635 pooled SNAPC5.c 479 to 793 315 to 2       314/315
(99 %)
0 diff
(100 %id)
AI524169 B-cell, chronic lymphotic leukemia SNAPC5.c 479 to 999 527 to 8       520/527
(98 %)
0 diff
(100 %id)
EL950092 eyeball SNAPC5.c 480 to 915 1 to 439       439/439
(100 %)
10 diff
(97.8 %id)
BX384378   SNAPC5.c 491 to 1001 1 to 510       510/510
(100 %)
2 diff
(99.7 %id)
AI239989 pooled SNAPC5.c 497 to 996 499 to 1       499/499
(100 %)
3 diff
(99.4 %id)
AA724732 pooled SNAPC5.c 511 to 791 285 to 5       281/285
(98 %)
0 diff
(100 %id)
AA844585 parathyroid gland, parathyroid tumor SNAPC5.c 523 to 1000 486 to 14   AAA   473/475
(99 %)
9 diff
(98.2 %id)
AI864902 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) SNAPC5.c 524 to 999 468 to 1       468/468
(100 %)
6 diff
(98.8 %id)
N34488 melanocyte SNAPC5.c 533 to 1004 476 to 1       476/476
(100 %)
12 diff
(97.5 %id)
CD369680 Alveolar Macrophage, lung SNAPC5.c 539 to 1000 479 to 19   AAA   461/461
(100 %)
3 diff
(99.4 %id)
AI366759 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus SNAPC5.c 540 to 1005 471 to 7       465/471
(98 %)
0 diff
(100 %id)
AA905718 pooled SNAPC5.c 542 to 1001 464 to 6       459/464
(98 %)
0 diff
(100 %id)
AI347375 2 pooled tumors (clear cell type), Kidney SNAPC5.c 544 to 999 459 to 5       455/459
(99 %)
0 diff
(100 %id)
DB508889 testis SNAPC5.c 549 to 998 1 to 449     Submitted on the opposite strand 449/451
(99 %)
10 diff
(97.8 %id)
AW087583 pooled SNAPC5.c 549 to 996 454 to 8       447/454
(98 %)
0 diff
(100 %id)
AI678026 adenocarcinoma, Pancreas SNAPC5.c 551 to 1001 443 to 1       443/443
(100 %)
5 diff
(98.9 %id)
AA883797 pooled SNAPC5.c 559 to 1001 445 to 4       442/449
(98 %)
0 diff
(100 %id)
AI971140 Prostate SNAPC5.c 559 to 1000 455 to 15   AAA   441/441
(100 %)
6 diff
(98.7 %id)
AI159921 heart SNAPC5.c 573 to 933 361 to 1       361/361
(100 %)
1 diff
(99.8 %id)
DB561398 hypothalamus SNAPC5.c 574 to 999 1 to 425     Submitted on the opposite strand 425/425
(100 %)
2 diff
(99.6 %id)
AI266085 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus SNAPC5.c 579 to 999 420 to 1       420/420
(100 %)
1 diff
(99.8 %id)
AI263485 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus SNAPC5.c 583 to 1000 417 to 1       417/417
(100 %)
2 diff
(99.6 %id)
AA961865 pooled germ cell tumors SNAPC5.c 584 to 997 413 to 1       413/413
(100 %)
2 diff
(99.6 %id)
W15452 parathyroid gland, parathyroid tumor SNAPC5.c 594 to 1001 426 to 6       421/450
(93 %)
0 diff
(100 %id)
AW274022 pooled SNAPC5.c 594 to 1001 409 to 3       407/409
(99 %)
0 diff
(100 %id)
AA628164   SNAPC5.c 596 to 999 413 to 11   AAA   403/403
(100 %)
2 diff
(99.6 %id)
AI022611 parathyroid gland, parathyroid tumor SNAPC5.c 603 to 1000 397 to 1       397/397
(100 %)
1 diff
(99.8 %id)
AW268721 pooled SNAPC5.c 620 to 999 389 to 11   AAA   379/379
(100 %)
3 diff
(99.3 %id)
BE933345 head_neck SNAPC5.c 655 to 986 1 to 334       334/337
(99 %)
19 diff
(94.4 %id)
AA811945 germinal center B cell SNAPC5.c 655 to 1000 360 to 16   AAA   345/345
(100 %)
6 diff
(98.3 %id)
BF512180   SNAPC5.c 656 to 910 272 to 18   AAA   255/261
(97 %)
3 diff
(98.9 %id)
AA934064 pooled SNAPC5.c 661 to 998 339 to 3       337/339
(99 %)
0 diff
(100 %id)
AI208308   SNAPC5.c 667 to 1001 338 to 5       334/338
(98 %)
0 diff
(100 %id)
AW149147 Kidney, renal cell tumor SNAPC5.c 687 to 1000 313 to 1       313/313
(100 %)
2 diff
(99.4 %id)
BG943088 blood SNAPC5.c 693 to 1000 351 to 45   AAA   307/307
(100 %)
11 diff
(96.5 %id)
H01237 placenta SNAPC5.c 697 to 991 304 to 1   fully sequenced,   304/304
(100 %)
8 diff
(97.4 %id)
N90343 multiple sclerosis lesions SNAPC5.c 700 to 984 1 to 285   fully sequenced,   285/285
(100 %)
1 diff
(99.7 %id)
CR745120 melanocyte SNAPC5.c 701 to 997 1 to 296   AAA   296/296
(100 %)
2 diff
(99.4 %id)
AA256325 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus SNAPC5.c 713 to 1000 287 to 1       287/287
(100 %)
1 diff
(99.7 %id)
N79019 parathyroid gland, parathyroid tumor SNAPC5.c 730 to 1001 274 to 5       270/274
(98 %)
0 diff
(100 %id)
N51281 multiple sclerosis lesions SNAPC5.c 733 to 986 255 to 2       254/255
(99 %)
0 diff
(100 %id)
BG940778 blood SNAPC5.c 741 to 1000 289 to 31   AAA   259/259
(100 %)
5 diff
(98.1 %id)
AA779068   SNAPC5.c 757 to 1001 245 to 2       244/245
(99 %)
0 diff
(100 %id)
AI301725 carcinoid, lung SNAPC5.c 772 to 996 224 to 1       224/224
(100 %)
2 diff
(99.2 %id)
FN167620 breast carcinoma SNAPC5.c 795 to 884 1 to 88       88/88
(100 %)
4 diff
(95.5 %id)
BG940780 blood SNAPC5.c 817 to 1001 213 to 30       184/213
(86 %)
0 diff
(100 %id)
CN360862 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 SNAPC5.c 829 to 1000 1 to 171   AAA   171/171
(100 %)
7 diff
(96.0 %id)
N63274 multiple sclerosis lesions SNAPC5.c 844 to 987 144 to 1   fully sequenced,   144/144
(100 %)
2 diff
(98.7 %id)
EH345396   SNAPC5.c 905 to 972 1 to 68       68/68
(100 %)
0 diff
(100 %id)
BX394387 Neuroblastoma Cot 25-normalized SNAPC5.c 1231 to 2237 992 to 1   tiling clone,   992/1011
(98 %)
31 diff
(97.0 %id)
BG950574 colon SNAPC5.c 1391 to 1680 17 to 306       290/306
(94 %)
0 diff
(100 %id)
BM457580 embryonal carcinoma, cell line, testis SNAPC5.c 1398 to 2107 130 to 840   tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 711/843
(84 %)
6 diff
(99.3 %id)
BU941208 mixed (pool of 40 RNAs) SNAPC5.c 1447 to 2106 1 to 660       660/667
(98 %)
4 diff
(99.5 %id)
BM992243 Bone, Subchondral Bone SNAPC5.c 1758 to 2246 507 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 489/489
(100 %)
0 diff
(100 %id)
BP396999 pancreatic islet SNAPC5.c 1763 to 2094 33 to 367     Submitted on the opposite strand 335/367
(91 %)
0 diff
(100 %id)
AA605059 adrenal adenoma, adrenal gland SNAPC5.c 1796 to 2116 321 to 1       321/321
(100 %)
0 diff
(100 %id)
W33032 parathyroid gland, parathyroid tumor SNAPC5.c 1918 to 2086 1 to 170       170/170
(100 %)
1 diff
(99.5 %id)
BP211241 cerebellum SNAPC5.d 1 to 586 3 to 588 E7* tiling clone,   588/588
(100 %)
6 diff
(99.0 %id)
AV715338   SNAPC5.d 18 to 446 1 to 431 S50G S51F H52S T53H V54C ...     431/652
(66 %)
17 diff
(97.4 %id)
DB491057 hypothalamus SNAPC5.d 18 to 446 1 to 431 L76P E77G L78A S79E T80H ...     431/433
(99 %)
5 diff
(98.9 %id)
BU955388 mixed (pool of 40 RNAs) SNAPC5.d 24 to 459 1 to 433 exact     433/470
(92 %)
3 diff
(99.4 %id)
AV693887 hepatocellular carcinoma SNAPC5.d 27 to 441 1 to 410 exact     410/411
(99 %)
7 diff
(98.3 %id)
AV694161 hepatocellular carcinoma SNAPC5.d 30 to 445 1 to 411 exact     411/411
(100 %)
9 diff
(97.9 %id)
AA773247 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus SNAPC5.d 34 to 467 1 to 434 L8M H23N E87D     434/434
(100 %)
3 diff
(99.4 %id)
C05226 heart SNAPC5.d 42 to 455 1 to 414 E90X E94X tiling clone,   414/414
(100 %)
0 diff
(100 %id)
AA348995 adrenal gland SNAPC5.d 184 to 449 1 to 266       266/266
(100 %)
0 diff
(100 %id)
FN097827 breast carcinoma SNAPC5.d 395 to 492 1 to 98       98/102
(96 %)
2 diff
(98.1 %id)
BG708506 brain, hypothalamus SNAPC5.e 1 to 717 1 to 718 E89D E90G E91G E92T E93R ... tiling clone,   718/718
(100 %)
14 diff
(98.1 %id)
CD685245 normal nasopharynx SNAPC5.e 14 to 647 38 to 671 exact tiling clone,   634/671
(94 %)
1 diff
(99.9 %id)
NM_006049.2   SNAPC5.e 14 to 798 1 to 785 exact RefSeq,   785/785
(100 %)
0 diff
(100 %id)
BP202493 amygdala SNAPC5.e 36 to 451 1 to 417 V31G E94K D97X     417/421
(99 %)
4 diff
(99.1 %id)
AK312018 Spleen SNAPC5.e 42 to 387 1 to 346 exact     346/346
(100 %)
0 diff
(100 %id)
BG940779 blood SNAPC5.e 53 to 410 1 to 358 exact     358/358
(100 %)
3 diff
(99.2 %id)
AA329509   SNAPC5.e 54 to 370 1 to 317       317/321
(98 %)
8 diff
(97.6 %id)
DB050280 testis SNAPC5.e 55 to 623 2 to 570 exact capped   569/569
(100 %)
0 diff
(100 %id)
BE247580 leukopheresis SNAPC5.e 59 to 375 1 to 317       317/355
(89 %)
3 diff
(99.2 %id)
BE259395 eye, retinoblastoma SNAPC5.e 64 to 787 20 to 741 exact tiling clone,   722/766
(94 %)
10 diff
(98.7 %id)
BF175413 blood SNAPC5.e 72 to 332 1 to 261       261/261
(100 %)
1 diff
(99.7 %id)
AW772698 normal epithelium, thyroid SNAPC5.e 78 to 341 22 to 286     Submitted on the opposite strand 263/286
(91 %)
1 diff
(99.7 %id)
CN347008 embryonic stem cells, DMSO-treated H9 cellline SNAPC5.e 82 to 642 9 to 569 exact     561/569
(98 %)
0 diff
(100 %id)
DB037177 testis SNAPC5.e 83 to 649 2 to 568 exact capped   567/567
(100 %)
4 diff
(99.3 %id)
AF093593   SNAPC5.e 91 to 387 1 to 297 exact     297/297
(100 %)
0 diff
(100 %id)
BP263707 small intestine SNAPC5.e 91 to 657 1 to 568 L5G S58C H59T D60*     568/568
(100 %)
21 diff
(96.4 %id)
BM835161 stomach SNAPC5.e 91 to 547 1 to 457 exact     457/457
(100 %)
0 diff
(100 %id)
CN347010 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells SNAPC5.e 92 to 798 1 to 708       708/708
(100 %)
1 diff
(99.9 %id)
BE677021 follicular carcinoma, thyroid SNAPC5.e 92 to 400 315 to 7       309/322
(95 %)
0 diff
(100 %id)
FN167754 breast carcinoma SNAPC5.e 184 to 270 90 to 3     Submitted on the opposite strand 88/90
(97 %)
0 diff
(100 %id)
BE676946 follicular carcinoma, thyroid SNAPC5.e 199 to 400 208 to 7       202/208
(97 %)
0 diff
(100 %id)
FN107671 breast carcinoma SNAPC5.e 295 to 363 1 to 69       69/69
(100 %)
1 diff
(98.6 %id)
FN062025 breast carcinoma SNAPC5.e 297 to 355 1 to 59       59/64
(92 %)
1 diff
(98.5 %id)
BQ050147 lymph, lymphoma, cell line SNAPC5.e 317 to 935 1 to 625   tiling clone,   625/1296
(48 %)
6 diff
(99.6 %id)
BF918630 nervous_tumor SNAPC5.e 416 to 548 12 to 144       133/155
(85 %)
6 diff
(96.2 %id)
TI_45216422   SNAPC5.f 1 to 741 123 to 866 exact     752/868
(86 %)
13 diff
(98.6 %id)
TI_44345521   SNAPC5.f 1 to 681 88 to 767 exact     688/767
(89 %)
1 diff
(99.9 %id)
DB291289 uterus SNAPC5.f 1 to 592 2 to 584 D24* tiling clone, capped   583/583
(100 %)
5 diff
(99.2 %id)
BI602677 brain, hypothalamus SNAPC5.f 6 to 741 6 to 745 exact tiling clone,   740/747
(99 %)
13 diff
(98.3 %id)
BI668816 brain, hypothalamus SNAPC5.f 6 to 681 6 to 681 exact     676/681
(99 %)
1 diff
(99.9 %id)
DA640648 Liver SNAPC5.f 10 to 540 2 to 532 exact capped   531/531
(100 %)
0 diff
(100 %id)
BM688969 eye, optic nerve SNAPC5.f 10 to 465 9 to 464 exact     456/464
(98 %)
2 diff
(99.6 %id)
BC014315 Bladder, carcinoma SNAPC5.f 26 to 627 1 to 602 exact available from MGC, AAA   602/602
(100 %)
4 diff
(99.4 %id)
CD700001 normal nasopharynx SNAPC5.f 28 to 605 10 to 587 exact     578/587
(98 %)
0 diff
(100 %id)
CD693427 normal nasopharynx SNAPC5.f 30 to 596 23 to 590 Q6X E7G L8T R9A K10Q ...     568/590
(96 %)
2 diff
(99.7 %id)
CD698566 normal nasopharynx SNAPC5.f 30 to 589 31 to 590 exact     560/590
(94 %)
0 diff
(100 %id)
CR983634 T-Lymphocytes SNAPC5.f 32 to 751 1 to 727 exact     727/730
(99 %)
11 diff
(98.5 %id)
AK292051 Spleen SNAPC5.f 46 to 644 1 to 599 exact tiling clone,   599/599
(100 %)
0 diff
(100 %id)
DA959076 Spleen SNAPC5.f 47 to 611 2 to 566 exact capped   565/565
(100 %)
0 diff
(100 %id)
AA287671 germinal center B cell SNAPC5.f 48 to 207 1 to 158       158/158
(100 %)
4 diff
(97.5 %id)
BF028375 bladder, carcinoma, cell line SNAPC5.f 48 to 443 1 to 400 E38D A39S S40I I41N N42Q ...     400/400
(100 %)
4 diff
(99.0 %id)
CV028818 mixed SNAPC5.f 61 to 266 1 to 206       206/308
(66 %)
1 diff
(99.7 %id)
AV722570 hypothalamus SNAPC5.f 68 to 698 1 to 626       626/694
(90 %)
22 diff
(96.9 %id)
BI261612 lymph, lymphoma, cell line SNAPC5.f 75 to 626 1 to 552   fully sequenced, AAA   552/552
(100 %)
1 diff
(99.9 %id)
BQ061515 lymph, lymphoma, cell line SNAPC5.f 78 to 626 1 to 550   AAA   550/550
(100 %)
1 diff
(99.9 %id)
BQ883131 lymph, lymphoma, cell line SNAPC5.f 78 to 626 1 to 549   AAA   549/549
(100 %)
0 diff
(100 %id)
BE908753 epithelioid carcinoma, Pancreas SNAPC5.f 92 to 823 1 to 729       729/730
(99 %)
7 diff
(99.1 %id)
FN082337 breast carcinoma SNAPC5.f 122 to 212 1 to 89       89/91
(97 %)
4 diff
(95.7 %id)
BI262304 lymph, lymphoma, cell line SNAPC5.f 149 to 575 430 to 2   fully sequenced,   429/430
(99 %)
0 diff
(100 %id)
BM662643 eye, optic nerve SNAPC5.f 557 to 885 346 to 19   tiling clone, AAA   328/328
(100 %)
3 diff
(99.1 %id)
DB321314 Liver SNAPC5.f 1454 to 1994 542 to 1   tiling clone,   542/542
(100 %)
2 diff
(99.7 %id)
AI192728 lung SNAPC5.g-u 1 to 371 371 to 1   tiling clone,   371/371
(100 %)
1 diff
(99.8 %id)
H84699 eye, retina SNAPC5.g-u 61 to 424 1 to 371       371/401
(92 %)
9 diff
(97.8 %id)
AA203358 liver and spleen SNAPC5.g-u 107 to 648 1 to 535   tiling clone,   535/752
(71 %)
14 diff
(98.2 %id)
AA694232 liver and spleen SNAPC5.g-u 364 to 819 469 to 15   AAA   455/455
(100 %)
1 diff
(99.8 %id)
EC512462 Prostate SNAPC5.g-u 384 to 497 1 to 112       112/113
(99 %)
2 diff
(98.3 %id)
AW419112 serous papillary carcinoma, high grade, 2pooled tumors, uterus SNAPC5.g-u 384 to 821 438 to 1   tiling clone,   438/438
(100 %)
1 diff
(99.8 %id)
AI076375 liver and spleen SNAPC5.g-u 385 to 819 458 to 25   AAA   434/434
(100 %)
1 diff
(99.8 %id)
CN479051 Human Lung Epithelial cells, lung SNAPC5.g-u 386 to 658 291 to 19   AAA   273/304
(89 %)
4 diff
(98.7 %id)
CB161847 Liver SNAPC5.g-u 388 to 785 14 to 411   AAA   398/411
(96 %)
0 diff
(100 %id)
BM712656 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid SNAPC5.g-u 388 to 837 8 to 457       450/457
(98 %)
0 diff
(100 %id)
T25415   SNAPC5.g-u 394 to 565 1 to 173       173/173
(100 %)
10 diff
(94.3 %id)
EC443579 Prostate SNAPC5.g-u 398 to 509 20 to 131       112/131
(85 %)
0 diff
(100 %id)
EC554469 Prostate SNAPC5.g-u 399 to 496 1 to 99       99/111
(89 %)
4 diff
(96.4 %id)
BP389899 pancreatic islet SNAPC5.g-u 399 to 895 498 to 1       498/498
(100 %)
1 diff
(99.8 %id)
CK902460 Pancreas, Purified pancreatic islet SNAPC5.g-u 402 to 935 1 to 534       534/534
(100 %)
3 diff
(99.5 %id)
AA703470 liver and spleen SNAPC5.g-u 404 to 659 257 to 1       257/257
(100 %)
6 diff
(97.7 %id)
BY998866   SNAPC5.g-u 406 to 570 166 to 1       166/170
(97 %)
3 diff
(98.3 %id)
AW966532   SNAPC5.g-u 407 to 812 1 to 407       407/477
(85 %)
3 diff
(99.4 %id)
CB157458 Liver SNAPC5.g-u 417 to 985 1 to 569   tiling clone,   569/569
(100 %)
0 diff
(100 %id)
M78845   SNAPC5.g-u 431 to 771 1 to 344       344/344
(100 %)
5 diff
(98.6 %id)
FN090595 breast carcinoma SNAPC5.g-u 473 to 574 1 to 98       98/102
(96 %)
8 diff
(92.2 %id)
BE010097 breast_normal SNAPC5.g-u 495 to 764 1 to 271       271/284
(95 %)
2 diff
(99.3 %id)
CK327212 lung_normal SNAPC5.g-u 508 to 868 1 to 367       367/367
(100 %)
22 diff
(94.1 %id)
DV462861 cochlea, ear SNAPC5.g-u 525 to 819 1 to 295       295/295
(100 %)
0 diff
(100 %id)
T28265 colon, embryo SNAPC5.g-u 550 to 881 1 to 334       334/334
(100 %)
2 diff
(99.5 %id)
H85090 eye, retina SNAPC5.g-u 604 to 807 204 to 1       204/204
(100 %)
6 diff
(97.1 %id)
BQ325225 colon_ins SNAPC5.g-u 815 to 1174 1 to 360 C59F     360/398
(90 %)
4 diff
(99.0 %id)
BU192745 eye, retinoblastoma SNAPC5.g-u 862 to 1770 1 to 909   tiling clone,   909/910
(99 %)
4 diff
(99.6 %id)
CN347009 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 SNAPC5.g-u 1217 to 1871 1 to 656       656/656
(100 %)
2 diff
(99.7 %id)
TI_149304385   SNAPC5.g-u 1293 to 2177 959 to 85   tiling clone, AAA   875/953
(91 %)
23 diff
(97.6 %id)
TI_149294596   SNAPC5.g-u 1355 to 2177 908 to 88   tiling clone, AAA   821/973
(84 %)
5 diff
(99.5 %id)
DB060143 testis SNAPC5.g-u 1397 to 1937 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
BX101598   SNAPC5.g-u 2245 to 3011 1 to 766   tiling clone,   766/766
(100 %)
1 diff
(99.9 %id)
BE395673 endometrium, adenocarcinoma cell line, uterus SNAPC5.g-u 2342 to 2962 1 to 621       621/742
(83 %)
11 diff
(98.6 %id)
DB339170 testis SNAPC5.g-u 2660 to 3198 536 to 1       536/536
(100 %)
5 diff
(99.1 %id)
BX482085   SNAPC5.g-u 2722 to 3228 507 to 1   tiling clone, Submitted on the opposite strand 507/511
(99 %)
3 diff
(99.5 %id)
AI028213   SNAPC5.g-u 2768 to 3199 435 to 4       432/435
(99 %)
0 diff
(100 %id)
DA511646 brain SNAPC5.h 1 to 491 2 to 493 exact tiling clone, capped   492/492
(100 %)
2 diff
(99.6 %id)
DB130534 thymus SNAPC5.h 265 to 815 2 to 551   tiling clone, capped   550/550
(100 %)
1 diff
(99.9 %id)
DB141754 thymus SNAPC5.h 663 to 1224 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DB141758 thymus SNAPC5.h 663 to 1226 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA950089 Spleen SNAPC5.h 676 to 1244 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DB316336 brain SNAPC5.h 1756 to 2307 544 to 1   tiling clone,   544/544
(100 %)
6 diff
(98.9 %id)
AK024763   SNAPC5.i 1 to 1740 2 to 1735 E47G tiling clone, available from FLJ, AAA   1735/1735
(100 %)
5 diff
(99.8 %id)
AU098454   SNAPC5.i 1 to 299 2 to 300       300/300
(100 %)
1 diff
(99.7 %id)
BI521424 pooled pancreas and spleen SNAPC5.i 1046 to 1736 1 to 676       676/715
(94 %)
15 diff
(98.0 %id)
BF577085 muscle (skeletal) SNAPC5.i 1247 to 1821 1 to 573   tiling clone,   573/577
(99 %)
7 diff
(98.8 %id)
FN052371 breast carcinoma SNAPC5.i 1400 to 1473 1 to 73       73/73
(100 %)
3 diff
(95.9 %id)
CR614188 adult brain SNAPC5.j 1 to 1069 1 to 1069 exact tiling clone,   1069/1069
(100 %)
0 diff
(100 %id)
BX423168 adult brain, brain SNAPC5.j 2 to 1069 1 to 1061 exact fully sequenced,   1061/1061
(100 %)
14 diff
(98.7 %id)
D61513   SNAPC5.j 52 to 333 1 to 293       293/293
(100 %)
15 diff
(94.9 %id)
FN127264 breast carcinoma SNAPC5.j 235 to 308 1 to 74       74/75
(98 %)
3 diff
(96.0 %id)
BX463690 adult brain, brain SNAPC5.j 301 to 1064 761 to 1   fully sequenced,   761/761
(100 %)
3 diff
(99.7 %id)
BM674823 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid SNAPC5.k-u 1 to 699 710 to 19 exact tiling clone, AAA   692/764
(90 %)
6 diff
(99.3 %id)
BF960727 nervous_normal SNAPC5.k-u 62 to 436 1 to 374 exact     374/375
(99 %)
4 diff
(99.0 %id)
AA371354 Prostate SNAPC5.k-u 136 to 403 1 to 268 exact     268/268
(100 %)
0 diff
(100 %id)
DA040854 bladder SNAPC5.l 1 to 573 2 to 572 R47L P48T F49I P50S N52Q ... tiling clone, capped   571/571
(100 %)
3 diff
(99.5 %id)
BF752465 breast_normal SNAPC5.m-u 1 to 401 1 to 401 exact tiling clone,   401/401
(100 %)
1 diff
(99.8 %id)
AA002192 liver and spleen SNAPC5.m-u 70 to 452 1 to 389   tiling clone,   389/398
(97 %)
15 diff
(96.3 %id)
CD615591   SNAPC5.m-u 142 to 395 10 to 263       254/263
(96 %)
5 diff
(98.1 %id)
AV726196 hypothalamus Gene SNAPC5, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AV653411 corresponding non cancerous liver tissue Gene SNAPC5, variant not shown         Suspected internal deletion, this clone was ignored    
CK299046 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene SNAPC5, variant not shown         Submitted on the opposite strand    
DB302702 amygdala Gene SNAPC5, variant not shown              
DA174554 amygdala Gene SNAPC5, variant not shown       capped      
T98639 liver and spleen Gene SNAPC5, variant not shown       fully sequenced,      
T98689 liver and spleen Gene SNAPC5, variant not shown       fully sequenced,      
AW593076 pooled Gene SNAPC5, variant not shown              
BG167049 hypernephroma, cell line, Kidney Gene SNAPC5, variant not shown              
BQ019982 Chondrosarcoma, Left Pubic Bone Gene SNAPC5, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a-u, .b, .c, .d, .e, .f, .g-u, .h, .i, .j, .k-u, .l, .m-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI