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Gene SMYD1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
89 supporting clones for gene SMYD1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_1520874229   .a 1 to 1213 40 to 1246   tiling clone,   1207/1262
(95 %)
43 diff
(96.6 %id)
BC126191 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 10 to 2210 1 to 2201 exact     2201/2201
(100 %)
4 diff
(99.9 %id)
DA763651 tongue .a 56 to 276 2 to 224   capped   223/223
(100 %)
2 diff
(99.2 %id)
DA820909 pericardium .a 56 to 622 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA822646 pericardium .a 56 to 622 2 to 568   capped   567/575
(98 %)
1 diff
(99.9 %id)
DA821537 pericardium .a 58 to 615 9 to 567   capped   559/559
(100 %)
2 diff
(99.7 %id)
BX647878 heart .a 91 to 4436 1 to 4346 S128P tiling clone, available from DKFZ, AAA   4346/4346
(100 %)
7 diff
(99.9 %id)
AK091724 heart .a 92 to 1909 1 to 1818 exact available from FLJ,   1818/1818
(100 %)
5 diff
(99.8 %id)
AX747145   .a 92 to 1909 1 to 1818 exact     1818/1818
(100 %)
5 diff
(99.8 %id)
CV348614 head_normal .a 92 to 415 333 to 10     Submitted on the opposite strand 324/334
(97 %)
0 diff
(100 %id)
AL832035 skeletal muscle .a 93 to 4436 1 to 4344 exact tiling clone, available from DKFZ, AAA   4344/4344
(100 %)
8 diff
(99.9 %id)
DA339996 hippocampus .a 93 to 677 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA535738 heart .a 93 to 645 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DA559530 heart .a 93 to 877 2 to 790   capped   789/801
(98 %)
13 diff
(98.4 %id)
NM_198274.2   .a 93 to 4436 1 to 4344 exact RefSeq, AAA   4344/4344
(100 %)
8 diff
(99.9 %id)
AY518933 embryonal rhabdomyosarcoma .a 113 to 1907 1 to 1795       1795/1795
(100 %)
3 diff
(99.9 %id)
R41158   .a 678 to 852 1 to 174       174/174
(100 %)
8 diff
(95.5 %id)
Z21651   .a 895 to 1185 1 to 291       291/316
(92 %)
12 diff
(96.3 %id)
TI_1520873791   .a 916 to 1585 679 to 9       671/679
(98 %)
0 diff
(100 %id)
BM722342 eye, fetal eye .a 941 to 1561 1 to 621       621/621
(100 %)
1 diff
(99.9 %id)
AA716121 heart .a 962 to 1466 503 to 1       503/503
(100 %)
1 diff
(99.9 %id)
AA095564   .a 1014 to 1239 1 to 225       225/237
(94 %)
3 diff
(98.8 %id)
BQ918532 sciatic nerve .a 1077 to 1798 1 to 737       737/904
(81 %)
19 diff
(97.9 %id)
R15498   .a 1284 to 1511 1 to 220       220/222
(99 %)
21 diff
(90.6 %id)
AA403165   .a 1345 to 1742 50 to 446     Submitted on the opposite strand 397/446
(89 %)
11 diff
(97.6 %id)
AI352242   .a 1345 to 1691 49 to 395     Submitted on the opposite strand 347/395
(87 %)
8 diff
(98.0 %id)
TI_1520873593   .a 1379 to 1532 157 to 5       153/157
(97 %)
0 diff
(100 %id)
DB318666 heart .a 1407 to 1909 506 to 1       506/514
(98 %)
14 diff
(97.3 %id)
W04738 lung .a 1412 to 1651 24 to 262       239/295
(81 %)
3 diff
(99.0 %id)
CF552718 Pooled muscle (cardiac and skeletal) .a 1415 to 2243 46 to 893       848/893
(94 %)
6 diff
(99.4 %id)
F31937 pectoral muscle (after mastectomy) .a 1506 to 1814 1 to 309       309/309
(100 %)
5 diff
(98.4 %id)
AA332586 Embryo, 8 weeks .a 1547 to 1909 1 to 365       365/365
(100 %)
4 diff
(99.0 %id)
AA334194   .a 1614 to 1825 1 to 212       212/212
(100 %)
5 diff
(97.7 %id)
N75296 lung .a 1620 to 1910 304 to 6       299/306
(97 %)
0 diff
(100 %id)
BU740179 eye, fetal eye .a 1702 to 2071 563 to 195   AAA   369/375
(98 %)
0 diff
(100 %id)
BX500817 Liver .a 1736 to 2144 1 to 409       409/409
(100 %)
0 diff
(100 %id)
AA092870   .a 1818 to 2074 1 to 257       257/257
(100 %)
7 diff
(97.3 %id)
AA632472   .a 1820 to 2145 1 to 325       325/325
(100 %)
7 diff
(97.9 %id)
AK022290 mammary gland .a 1824 to 4436 1 to 2613   tiling clone, available from FLJ,   2613/2613
(100 %)
10 diff
(99.7 %id)
AU121872 mammary gland .a 1825 to 2613 2 to 786   capped   785/796
(98 %)
9 diff
(98.9 %id)
AA642066   .a 1855 to 2205 352 to 1       352/352
(100 %)
3 diff
(99.2 %id)
BG989444 head_neck .a 2209 to 2828 622 to 1       622/622
(100 %)
24 diff
(96.2 %id)
AI014299 brain, pooled frontal lobe .a 2508 to 2790 283 to 1       283/283
(100 %)
1 diff
(99.7 %id)
BF576803 muscle (skeletal) .a 2551 to 3190 1 to 621       621/782
(79 %)
29 diff
(96.3 %id)
BF575127 muscle (skeletal) .a 2900 to 3620 1 to 726       726/778
(93 %)
22 diff
(97.2 %id)
BF671649 muscle (skeletal) .a 2978 to 3642 1 to 689       689/914
(75 %)
42 diff
(95.5 %id)
DA898826 skeletal muscle .a 3029 to 3600 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
BF670752 muscle (skeletal) .a 3034 to 3709 1 to 667       667/868
(76 %)
29 diff
(96.7 %id)
BF694716 muscle (skeletal) .a 3083 to 3784 1 to 678       678/856
(79 %)
31 diff
(96.4 %id)
AU147602 mammary gland .a 3931 to 4436 505 to 1       505/505
(100 %)
4 diff
(99.3 %id)
AY518934 embryonal rhabdomyosarcoma .b 1 to 3693 1 to 3693 exact tiling clone,   3693/3693
(100 %)
5 diff
(99.9 %id)
C04066 heart .b 2517 to 2994 1 to 477       477/477
(100 %)
3 diff
(99.4 %id)
C04457 heart .b 2517 to 2953 1 to 437       437/437
(100 %)
7 diff
(98.4 %id)
C05316 heart .b 2521 to 2844 1 to 324       324/324
(100 %)
6 diff
(98.2 %id)
BX103184 lung .b 2724 to 3467 32 to 774       743/774
(95 %)
6 diff
(99.3 %id)
W05233 lung .b 2724 to 2883 7 to 166       160/166
(96 %)
6 diff
(96.4 %id)
T20208   .b 2762 to 3012 1 to 251       251/254
(98 %)
10 diff
(96.1 %id)
R58377   .b 2805 to 3092 1 to 288       288/288
(100 %)
7 diff
(97.6 %id)
C04553 heart .b 2829 to 3230 1 to 402       402/402
(100 %)
6 diff
(98.6 %id)
AA248334   .b 2876 to 3035 1 to 160       160/160
(100 %)
0 diff
(100 %id)
BF825552 head_normal .b 2908 to 3194 1 to 288       288/288
(100 %)
7 diff
(97.6 %id)
W95588 heart .b 3048 to 3482 1 to 439       439/439
(100 %)
4 diff
(99.1 %id)
AJ709845 heart .b 3070 to 3443 14 to 387       374/387
(96 %)
6 diff
(98.5 %id)
BP420509 small intestine .b 3120 to 3616 1 to 497     Submitted on the opposite strand 497/497
(100 %)
0 diff
(100 %id)
BF060984 pooled .b 3157 to 3696 542 to 4       539/542
(99 %)
0 diff
(100 %id)
F34273 pectoral muscle (after mastectomy) .b 3238 to 3525 1 to 288       288/288
(100 %)
5 diff
(98.3 %id)
BQ338795 nervous_normal .b 3261 to 3474 7 to 220       214/220
(97 %)
6 diff
(97.3 %id)
AI078564 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3263 to 3694 432 to 1       432/432
(100 %)
0 diff
(100 %id)
AI079318 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3264 to 3695 432 to 1       432/432
(100 %)
0 diff
(100 %id)
AI420970 Prostate .b 3264 to 3693 446 to 17   AAA   430/430
(100 %)
1 diff
(99.8 %id)
AI004011   .b 3268 to 3693 436 to 11   AAA   426/426
(100 %)
0 diff
(100 %id)
N83502   .b 3289 to 3482 1 to 187       187/187
(100 %)
10 diff
(94.7 %id)
F23610 pectoral muscle (after mastectomy) .b 3293 to 3463 1 to 171       171/173
(98 %)
2 diff
(98.9 %id)
F26462 pectoral muscle (after mastectomy) .b 3303 to 3635 12 to 344       333/344
(96 %)
6 diff
(98.3 %id)
F30640 pectoral muscle (after mastectomy) .b 3309 to 3671 1 to 363       363/363
(100 %)
2 diff
(99.5 %id)
AJ572108 pectoral muscle (after mastectomy) .b 3313 to 3696 1 to 384   tiling clone,   384/385
(99 %)
2 diff
(99.5 %id)
F33639 pectoral muscle (after mastectomy) .b 3323 to 3626 1 to 304       304/304
(100 %)
7 diff
(97.7 %id)
AA993783   .b 3328 to 3691 366 to 3       364/368
(98 %)
0 diff
(100 %id)
T20209   .b 3357 to 3510 159 to 3       157/159
(98 %)
0 diff
(100 %id)
AI015235   .b 3372 to 3691 322 to 3       320/322
(99 %)
0 diff
(100 %id)
N74326 lung .b 3427 to 3690 264 to 1       264/268
(98 %)
1 diff
(99.7 %id)
DB361103 mammary gland .b 3435 to 3682 260 to 12       249/260
(95 %)
0 diff
(100 %id)
AI201350 lung .b 3474 to 3691 223 to 6       218/223
(97 %)
0 diff
(100 %id)
DA236359 brain .c 1 to 571 2 to 572 exact tiling clone, capped   571/574
(99 %)
2 diff
(99.7 %id)
BF673051 muscle (skeletal) .d 1 to 623 3 to 611 F50L V51C C52A H53T T54P ... tiling clone, available from MGC,   611/858
(71 %)
22 diff
(97.5 %id)
BC017915 skeletal muscle .d 1 to 1573 2 to 1575 exact tiling clone, available from MGC, AAA   1575/1575
(100 %)
5 diff
(99.7 %id)
AA249538   Gene SMYD1, variant not shown         Suspected internal deletion, this clone was ignored    
BX091608 lung Gene SMYD1, variant not shown         Suspected internal deletion, this clone was ignored    
AF086123   Gene SMYD1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AI192857 lung Gene SMYD1, variant not shown         Suspected internal deletion, this clone was ignored    
BF790590 muscle (skeletal) Gene SMYD1, variant not shown         Suspected internal deletion, this clone was ignored    
N56350   Gene SMYD1, variant not shown         Suspected internal deletion, this clone was ignored    
DA896773 skeletal muscle Gene SMYD1, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI