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Gene SMARCB1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
439 representative clones for gene SMARCB1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK024025   .a 283 to 1699 301 to 1717 N145D tiling clone, available from FLJ,   1717/1717
(100 %)
1 diff
(100.0 %id)
AU143041   .a 283 to 713 301 to 731   capped   730/787
(92 %)
5 diff
(99.4 %id)
CB161660 Liver .a 505 to 1070 1 to 566   tiling clone,   566/566
(100 %)
0 diff
(100 %id)
AU160207   .a 1567 to 1699 133 to 1       133/133
(100 %)
0 diff
(100 %id)
AW407946 lymph .a 1684 to 1962 25 to 303       279/303
(92 %)
6 diff
(98.1 %id)
DB526186.
matches multiple genes
testis .a 1693 to 2119 426 to 1   tiling clone, also hits gene DERL3 426/426
(100 %)
2 diff
(99.6 %id)
AW501146 lymph .a 1697 to 2095 27 to 424   tiling clone,   398/424
(93 %)
6 diff
(98.6 %id)
AW503040 lymph .a 1697 to 2024 27 to 354       328/354
(92 %)
6 diff
(98.4 %id)
AW501664 lymph .a 1697 to 1873 27 to 203       177/203
(87 %)
6 diff
(97.1 %id)
CF121519 lymph .a 1697 to 2321 27 to 649   tiling clone,   623/649
(95 %)
6 diff
(99.1 %id)
CF143854 lymph .a 1697 to 2171 27 to 500       474/500
(94 %)
6 diff
(98.8 %id)
CF144137 lymph .a 1697 to 1954 27 to 284       258/284
(90 %)
6 diff
(97.9 %id)
TI_154155779   .a 1697 to 2115 100 to 517       418/437
(95 %)
6 diff
(98.7 %id)
TI_154158828   .a 1697 to 2292 105 to 702       598/620
(96 %)
52 diff
(91.7 %id)
TI_154175522   .a 1697 to 2257 79 to 642       564/876
(64 %)
29 diff
(96.7 %id)
TI_154176034   .a 1697 to 2197 107 to 609       503/1080
(46 %)
30 diff
(97.3 %id)
TI_154180647   .a 1697 to 2481 93 to 871   tiling clone,   779/841
(92 %)
12 diff
(98.6 %id)
DB508160 testis .a 1699 to 1901 204 to 1       204/204
(100 %)
5 diff
(97.6 %id)
CB049424 Prostate .a 1729 to 2109 1 to 379   tiling clone,   379/379
(100 %)
13 diff
(96.6 %id)
R15660   .a 2429 to 2818 1 to 382   tiling clone,   382/416
(91 %)
16 diff
(96.2 %id)
DC410674 thymus .b 1 to 481 1 to 481   tiling clone,   481/482
(99 %)
2 diff
(99.6 %id)
BP210633 cerebellum .b 8 to 588 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DR006741 Spleen .b 12 to 552 1 to 541       541/541
(100 %)
3 diff
(99.5 %id)
AU126179   .b 30 to 811 2 to 791   tiling clone, capped   790/792
(99 %)
23 diff
(97.1 %id)
AW403441 lymph .b 31 to 463 1 to 433       433/433
(100 %)
3 diff
(99.4 %id)
DN990922 brain, whole brain .b 32 to 609 1 to 578       578/578
(100 %)
2 diff
(99.7 %id)
BM467954 leiomyosarcoma, uterus .b 49 to 1077 1 to 1033   tiling clone,   1033/1110
(93 %)
23 diff
(98.0 %id)
AW575284 lymph .b 1543 to 1682 157 to 18   tiling clone, AAA   140/140
(100 %)
0 diff
(100 %id)
TI_57165157   .c 1 to 583 72 to 658       592/662
(89 %)
17 diff
(97.5 %id)
CR617530 B cells (Ramos cell line) .c 1 to 1662 8 to 1669 exact tiling clone,   1669/1669
(100 %)
0 diff
(100 %id)
BX421145 B cells (Ramos cell line) .c 1 to 817 8 to 820       820/820
(100 %)
5 diff
(99.4 %id)
BX424799 B cells (Ramos cell line) .c 1 to 883 8 to 889       889/889
(100 %)
3 diff
(99.7 %id)
BP199570 brain .c 1 to 555 4 to 561       561/581
(96 %)
33 diff
(94.4 %id)
BX420079 brain, fetal brain .c 1 to 817 4 to 819       819/819
(100 %)
6 diff
(99.3 %id)
BP363260 lung .c 1 to 579 4 to 582       582/582
(100 %)
17 diff
(97.1 %id)
BP375627 uterus .c 1 to 555 4 to 558       558/562
(99 %)
9 diff
(98.4 %id)
DC325027 brain .c 1 to 573 2 to 574       574/574
(100 %)
0 diff
(100 %id)
BP212557 cerebrum .c 1 to 579 2 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BP212679 cerebrum .c 1 to 580 2 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DT216207 brain .c 1 to 504 2 to 505       505/505
(100 %)
1 diff
(99.9 %id)
BP236586 coronary artery .c 1 to 581 2 to 582       582/583
(99 %)
13 diff
(97.8 %id)
BP270526 small intestine .c 5 to 581 1 to 580       577/582
(99 %)
22 diff
(96.3 %id)
BP249241 Kidney .c 7 to 552 1 to 544       544/581
(93 %)
13 diff
(97.8 %id)
BP255074 Kidney .c 7 to 588 1 to 582       582/582
(100 %)
0 diff
(100 %id)
TI_57167070   .c 8 to 550 31 to 574       541/643
(84 %)
8 diff
(98.8 %id)
BP232416 muscle .c 9 to 537 1 to 529       529/533
(99 %)
5 diff
(99.1 %id)
CR619336 Placenta Cot 25-normalized .c 11 to 1649 1 to 1639 exact     1639/1639
(100 %)
0 diff
(100 %id)
CR625181 Placenta Cot 25-normalized .c 11 to 1622 1 to 1612 exact     1612/1612
(100 %)
0 diff
(100 %id)
BX357764 Placenta Cot 25-normalized .c 11 to 768 1 to 757   fully sequenced,   757/757
(100 %)
2 diff
(99.8 %id)
BX387795 Placenta Cot 25-normalized .c 11 to 906 1 to 898   fully sequenced,   898/898
(100 %)
4 diff
(99.6 %id)
CR590397 Neuroblastoma Cot 25-normalized .c 12 to 1652 1 to 1641 exact     1641/1641
(100 %)
0 diff
(100 %id)
CR594771 fetal brain .c 12 to 1660 1 to 1649 exact     1649/1649
(100 %)
0 diff
(100 %id)
CR620956 fetal brain .c 12 to 1656 1 to 1645 exact     1645/1645
(100 %)
0 diff
(100 %id)
BX366414 Neuroblastoma Cot 25-normalized .c 12 to 768 1 to 758   fully sequenced,   758/758
(100 %)
4 diff
(99.5 %id)
BX440264 brain, fetal brain .c 12 to 817 1 to 806       806/806
(100 %)
14 diff
(98.3 %id)
BX465054 brain, fetal brain .c 12 to 979 1 to 963       962/965
(99 %)
45 diff
(95.4 %id)
BX418508 brain, fetal brain .c 12 to 978 1 to 964       964/964
(100 %)
6 diff
(99.4 %id)
BX424760 brain, fetal brain .c 12 to 984 1 to 972       972/972
(100 %)
7 diff
(99.3 %id)
BX428262 brain, fetal brain .c 12 to 984 1 to 973       973/973
(100 %)
2 diff
(99.8 %id)
BX426618 T cells (Jurkat cell line) .c 12 to 980 1 to 967       967/967
(100 %)
7 diff
(99.3 %id)
BP234780 coronary artery .c 12 to 597 1 to 586       586/588
(99 %)
3 diff
(99.5 %id)
DC387148   .c 12 to 550 1 to 539       539/539
(100 %)
0 diff
(100 %id)
CR626732 neuroblastoma .c 14 to 1669 1 to 1656 exact     1656/1656
(100 %)
0 diff
(100 %id)
BP361123 thalamus .c 14 to 595 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
CR600743 placenta .c 15 to 1656 1 to 1642 exact     1642/1642
(100 %)
0 diff
(100 %id)
CR619411 Placenta Cot 25-normalized .c 15 to 1643 1 to 1629 exact     1629/1629
(100 %)
0 diff
(100 %id)
CR625707 neuroblastoma .c 15 to 1653 1 to 1639 exact     1639/1639
(100 %)
0 diff
(100 %id)
BX416711 neuroblastoma .c 15 to 984 1 to 970       970/970
(100 %)
11 diff
(98.9 %id)
BX458738 placenta .c 15 to 1160 1 to 1141       1141/1141
(100 %)
12 diff
(99.0 %id)
BX358655 Placenta Cot 25-normalized .c 15 to 848 1 to 834   fully sequenced,   834/834
(100 %)
1 diff
(99.9 %id)
DC361199   .c 18 to 511 1 to 494       494/494
(100 %)
0 diff
(100 %id)
TI_45379494   .c 19 to 758 56 to 806       747/806
(92 %)
27 diff
(96.7 %id)
DC373296 tongue .c 21 to 520 1 to 500       500/500
(100 %)
0 diff
(100 %id)
BM747684 stomach .c 21 to 597 10 to 586       577/577
(100 %)
2 diff
(99.7 %id)
BX424666 neuroblastoma .c 24 to 965 1 to 941       941/941
(100 %)
1 diff
(99.9 %id)
TI_57220920   .c 24 to 761 69 to 796       725/796
(91 %)
16 diff
(98.0 %id)
BX457798 neuroblastoma .c 25 to 817 1 to 793       793/793
(100 %)
3 diff
(99.7 %id)
BF530937 anaplastic oligodendroglioma with 1p/19qloss, brain .c 25 to 537 1 to 527       527/530
(99 %)
33 diff
(93.8 %id)
TI_57168454   .c 30 to 685 64 to 727       661/728
(90 %)
21 diff
(97.2 %id)
BI200222 brain, neuroblastoma .c 33 to 539 6 to 517       509/517
(98 %)
15 diff
(97.1 %id)
BM924042 pooled colon, kidney, stomach .c 34 to 982 1 to 953       953/1009
(94 %)
17 diff
(98.4 %id)
CR600940 Placenta Cot 25-normalized .c 35 to 1651 1 to 1617 exact     1617/1617
(100 %)
0 diff
(100 %id)
CR601509 Placenta Cot 25-normalized .c 35 to 1653 1 to 1619 exact     1619/1619
(100 %)
0 diff
(100 %id)
BX357214 Placenta Cot 25-normalized .c 35 to 877 1 to 843       843/843
(100 %)
2 diff
(99.8 %id)
BX361141 Placenta Cot 25-normalized .c 35 to 980 1 to 944       944/944
(100 %)
10 diff
(99.0 %id)
BQ897135 dorsal root ganglia .c 35 to 953 1 to 924       924/932
(99 %)
15 diff
(98.4 %id)
TI_154140155   .c 36 to 513 95 to 572       478/478
(100 %)
0 diff
(100 %id)
BQ069831 brain, neuroblastoma, cell line .c 37 to 936 1 to 908       908/1007
(90 %)
13 diff
(98.8 %id)
BQ686885 ductal carcinoma, cell line, Pancreas .c 37 to 817 1 to 781       781/862
(90 %)
4 diff
(99.6 %id)
BQ685735 ductal carcinoma, cell line, Pancreas .c 37 to 421 1 to 385       385/1116
(34 %)
10 diff
(99.2 %id)
AJ011737   .c 43 to 1681 1 to 1640 exact     1640/1640
(100 %)
1 diff
(100.0 %id)
CX756121 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 72 to 683 53 to 661     Submitted on the opposite strand 606/830
(73 %)
44 diff
(94.7 %id)
BM555552 duodenal adenocarcinoma, cell line, small intestine .c 87 to 1072 1 to 995       995/1008
(98 %)
10 diff
(99.1 %id)
BM457211 embryonal carcinoma, cell line, testis .c 87 to 761 1 to 675       675/1098
(61 %)
9 diff
(99.2 %id)
H23089 whole brain .c 88 to 486 1 to 404       404/404
(100 %)
14 diff
(96.6 %id)
BG030793 breast, mammary adenocarcinoma, cell line .c 88 to 698 1 to 615       615/925
(66 %)
22 diff
(97.7 %id)
BP214946 corpus callosum .c 89 to 670 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BU170119 embryonal carcinoma, cell line, testis .c 94 to 873 1 to 788       788/796
(98 %)
15 diff
(98.2 %id)
BX407202 brain, fetal brain .c 104 to 984 1 to 876       876/876
(100 %)
11 diff
(98.8 %id)
U04847   .c 121 to 1683 1 to 1563 P136S A382G     1563/1857
(84 %)
5 diff
(99.8 %id)
BX391835 Placenta Cot 25-normalized .c 126 to 984 858 to 1       858/863
(99 %)
11 diff
(98.8 %id)
CR456581   .c 137 to 1518 1 to 1382 exact     1382/1382
(100 %)
0 diff
(100 %id)
BP364856 lung .c 145 to 732 1 to 588       588/588
(100 %)
2 diff
(99.7 %id)
CU013468 Synthetic constructs .c 190 to 1344 20 to 1174       1152/1189
(96 %)
7 diff
(99.5 %id)
CU013180 Synthetic constructs .c 190 to 1350 20 to 1180 exact     1158/1192
(97 %)
7 diff
(99.5 %id)
BM457212 embryonal carcinoma, cell line, testis .c 191 to 685 101 to 599       496/1137
(43 %)
17 diff
(98.6 %id)
BE410872 choriocarcinoma, placenta .c 196 to 555 195 to 571       547/750
(72 %)
45 diff
(94.0 %id)
BE812852 amnion_normal .c 214 to 694 11 to 490       477/491
(97 %)
11 diff
(97.8 %id)
BE882135 leiomyosarcoma, uterus .c 227 to 984 1 to 749       749/1057
(70 %)
16 diff
(98.5 %id)
BX430151 brain, fetal brain .c 276 to 933 660 to 1       660/777
(84 %)
13 diff
(98.4 %id)
BE904139 epithelioid carcinoma, Pancreas .c 276 to 982 4 to 705       702/912
(76 %)
22 diff
(97.6 %id)
NM_003073.3   .c 283 to 1684 301 to 1702 exact RefSeq, AAA   1702/1702
(100 %)
0 diff
(100 %id)
CB159362 Liver .c 286 to 805 1 to 520       520/520
(100 %)
0 diff
(100 %id)
CR590517 Neuroblastoma Cot 10-normalized .c 346 to 1665 1 to 1320       1320/1320
(100 %)
0 diff
(100 %id)
BX331228 Neuroblastoma Cot 10-normalized .c 346 to 1220 1 to 875       875/875
(100 %)
1 diff
(99.9 %id)
BF971429 adrenal cortex carcinoma, cell line, adrenal gland .c 350 to 986 1 to 658       658/665
(98 %)
37 diff
(94.5 %id)
BP227125   .c 377 to 958 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BP231334 muscle .c 382 to 963 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BQ345880 nervous_tumor .c 387 to 555 213 to 41       176/213
(82 %)
4 diff
(98.2 %id)
BP354911   .c 393 to 969 1 to 583       583/583
(100 %)
16 diff
(97.3 %id)
CD616213   .c 403 to 1033 8 to 638       631/638
(98 %)
6 diff
(99.1 %id)
BP351914   .c 415 to 1001 1 to 587       587/587
(100 %)
2 diff
(99.7 %id)
BX366413 Neuroblastoma Cot 25-normalized .c 738 to 1652 916 to 1   fully sequenced,   916/916
(100 %)
3 diff
(99.7 %id)
BX357763 Placenta Cot 25-normalized .c 738 to 1649 911 to 1   fully sequenced,   911/911
(100 %)
2 diff
(99.8 %id)
AW732745 Burkitt lymphoma, lymph .c 744 to 1231 1 to 487       487/487
(100 %)
3 diff
(99.4 %id)
BX358654 Placenta Cot 25-normalized .c 787 to 1632 861 to 12   fully sequenced,   850/861
(98 %)
0 diff
(100 %id)
BX387794 Placenta Cot 25-normalized .c 876 to 1622 748 to 1   fully sequenced,   748/748
(100 %)
8 diff
(99.0 %id)
AL389881   .c 1169 to 1681 1 to 512   AAA   512/512
(100 %)
6 diff
(98.9 %id)
AA468521 colon .c 1237 to 1683 450 to 4       447/450
(99 %)
0 diff
(100 %id)
AA557620 breast .c 1237 to 1672 437 to 1       437/437
(100 %)
12 diff
(97.3 %id)
AA480306 colon .c 1240 to 1681 460 to 19   AAA   442/442
(100 %)
5 diff
(98.9 %id)
BG395838 eye, retinoblastoma .c 1246 to 1678 1 to 438   AAA   438/438
(100 %)
15 diff
(96.6 %id)
BE254651 eye, retinoblastoma .c 1266 to 1677 1 to 415       415/417
(99 %)
15 diff
(96.5 %id)
T51908 ovary .c 1278 to 1485 1 to 207   fully sequenced,   207/207
(100 %)
7 diff
(96.7 %id)
AA121845   .c 1278 to 1672 1 to 399   AAA   399/399
(100 %)
8 diff
(98.0 %id)
BQ186720 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1308 to 1672 1 to 365   AAA   365/365
(100 %)
0 diff
(100 %id)
BM929887 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1319 to 1681 1 to 363   AAA   363/363
(100 %)
2 diff
(99.5 %id)
BG747542 adenocarcinoma cell line, colon .c 1328 to 1681 1 to 354   AAA   354/354
(100 %)
11 diff
(96.9 %id)
AI051427   .c 1345 to 1682 338 to 1       338/338
(100 %)
15 diff
(95.6 %id)
R96951 liver and spleen .c 1365 to 1679 330 to 7       324/380
(85 %)
0 diff
(100 %id)
AI820549 lung .c 1396 to 1673 1 to 278       278/278
(100 %)
0 diff
(100 %id)
AA130592 colon, tumor .c 1431 to 1682 253 to 1       253/253
(100 %)
4 diff
(98.5 %id)
T90667 liver and spleen .c 1449 to 1659 214 to 1       214/214
(100 %)
8 diff
(96.3 %id)
T51860 ovary .c 1455 to 1665 213 to 1   fully sequenced,   213/213
(100 %)
3 diff
(98.6 %id)
D17123   .c 1457 to 1667 1 to 213       213/214
(99 %)
3 diff
(98.6 %id)
AA857241 epithelium (cell line), Prostate .c 1489 to 1672 209 to 25   AAA   185/185
(100 %)
2 diff
(99.0 %id)
R53013 breast .c 1509 to 1681 173 to 1       173/173
(100 %)
0 diff
(100 %id)
BQ018870 lung, Metastatic Chondrosarcoma .c 1538 to 1672 153 to 19   AAA   135/135
(100 %)
0 diff
(100 %id)
TI_149297309   .c 1538 to 1678 221 to 81   AAA   141/145
(97 %)
3 diff
(98.0 %id)
TI_149297379   .c 1538 to 1678 221 to 81   AAA   141/145
(97 %)
0 diff
(100 %id)
TI_149302420   .c 1538 to 1678 212 to 72   AAA   141/141
(100 %)
0 diff
(100 %id)
BU619716 Cell Line, Chondrosarcoma .c 1538 to 1681 162 to 19   AAA   144/144
(100 %)
0 diff
(100 %id)
CA748780 Alveolar Macrophage, lung .c 1538 to 1681 162 to 19   AAA   144/144
(100 %)
1 diff
(99.4 %id)
AI865640 normal prostate, Prostate .c 1539 to 1678 143 to 4       140/144
(97 %)
0 diff
(100 %id)
CB850625 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 1539 to 1678 158 to 19   AAA   140/140
(100 %)
0 diff
(100 %id)
BM980621 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 1539 to 1678 158 to 19   AAA   140/140
(100 %)
0 diff
(100 %id)
CA445116 lung, Metastatic Chondrosarcoma .c 1539 to 1672 152 to 19   AAA   134/134
(100 %)
0 diff
(100 %id)
AI075165 liver and spleen .c 1540 to 1684 145 to 1       145/145
(100 %)
0 diff
(100 %id)
AI241194 Kidney .c 1540 to 1684 145 to 1       145/145
(100 %)
0 diff
(100 %id)
AI659004 Prostate .c 1540 to 1678 139 to 1       139/139
(100 %)
0 diff
(100 %id)
AI684914 pooled .c 1540 to 1674 141 to 6       136/141
(96 %)
0 diff
(100 %id)
AI806293 pooled .c 1540 to 1678 142 to 4       139/142
(97 %)
0 diff
(100 %id)
AI814266 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 1540 to 1674 138 to 4       135/139
(97 %)
0 diff
(100 %id)
AW001930 thymus, pooled .c 1540 to 1678 139 to 1       139/139
(100 %)
0 diff
(100 %id)
AI937916 brain, frontal lobe .c 1540 to 1674 141 to 7       135/141
(95 %)
0 diff
(100 %id)
AW025862 thymus, pooled .c 1540 to 1678 144 to 6       139/144
(96 %)
0 diff
(100 %id)
AW157181 brain, frontal lobe .c 1540 to 1674 141 to 7       135/141
(95 %)
0 diff
(100 %id)
CA313605 Human Lung Epithelial cells, lung .c 1540 to 1678 156 to 19   AAA   138/141
(97 %)
1 diff
(99.3 %id)
CD366353 Alveolar Macrophage, lung .c 1540 to 1666 144 to 19   AAA   126/128
(98 %)
1 diff
(99.3 %id)
CD742616 Alveolar Macrophage, lung .c 1540 to 1672 151 to 19   AAA   133/136
(97 %)
0 diff
(100 %id)
AI219922 pooled .c 1541 to 1681 141 to 1       141/141
(100 %)
0 diff
(100 %id)
AI889400 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 1541 to 1681 163 to 23   AAA   141/143
(98 %)
4 diff
(97.3 %id)
AI934805 anaplastic oligodendroglioma, brain .c 1541 to 1672 132 to 1       132/132
(100 %)
0 diff
(100 %id)
AW192349 adenocarcinoma, Pancreas .c 1542 to 1683 143 to 2       142/143
(99 %)
0 diff
(100 %id)
AW206910   .c 1542 to 1679 155 to 18   AAA   138/138
(100 %)
0 diff
(100 %id)
AW514053 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 1542 to 1678 138 to 2       137/138
(99 %)
0 diff
(100 %id)
BE207731 Burkitt lymphoma, lymph .c 1542 to 1685 145 to 2   tiling clone,   144/145
(99 %)
0 diff
(100 %id)
AW769907 lymph node, lymphoma, follicular mixed small and largecell .c 1542 to 1682 141 to 1       141/141
(100 %)
0 diff
(100 %id)
BE223100 brain, oligodendroglioma .c 1542 to 1666 125 to 1       125/125
(100 %)
0 diff
(100 %id)
BG059604 brain, glioblastoma without EGFR amplification .c 1542 to 1672 132 to 1       132/132
(100 %)
1 diff
(99.3 %id)
TI_154132698   .c 1542 to 1681 239 to 100   AAA   140/144
(97 %)
0 diff
(100 %id)
AI361160 brain, glioblastoma (pooled) .c 1543 to 1678 136 to 1       136/136
(100 %)
0 diff
(100 %id)
AI829315 adenocarcinoma, Pancreas .c 1543 to 1679 139 to 3       137/139
(98 %)
0 diff
(100 %id)
BF222408 Prostate .c 1543 to 1678 138 to 3       136/138
(98 %)
0 diff
(100 %id)
BM680044 eye, fetal eye .c 1543 to 1672 148 to 19   AAA   130/130
(100 %)
0 diff
(100 %id)
AI219942 pooled .c 1545 to 1681 137 to 1       137/141
(97 %)
0 diff
(100 %id)
BU617667 Bone, Subchondral Bone .c 1545 to 1672 146 to 19   AAA   128/128
(100 %)
2 diff
(98.5 %id)
BQ000700 Fibrosarcoma .c 1546 to 1681 154 to 19   AAA   136/136
(100 %)
0 diff
(100 %id)
CA411818 Chondrosarcoma Grade II, Left Pelvis .c 1546 to 1671 144 to 19   AAA   126/126
(100 %)
0 diff
(100 %id)
AI610780 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 1548 to 1672 125 to 1       125/125
(100 %)
0 diff
(100 %id)
BU679084 lung, Primary Lung Epithelial Cells .c 1548 to 1677 148 to 19   AAA   130/130
(100 %)
1 diff
(99.3 %id)
BM984887 lung .c 1548 to 1666 137 to 19   AAA   119/119
(100 %)
0 diff
(100 %id)
AI572706 adenocarcinoma, Pancreas .c 1550 to 1673 124 to 1       124/124
(100 %)
0 diff
(100 %id)
BM982396 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 1550 to 1678 147 to 19   AAA   129/129
(100 %)
0 diff
(100 %id)
AI340126 adenocarcinoma, colon .c 1551 to 1681 131 to 1       131/131
(100 %)
0 diff
(100 %id)
AI492717 lymph node, lymphoma, follicular mixed small and largecell .c 1551 to 1679 132 to 4       129/132
(97 %)
0 diff
(100 %id)
BG058701 blood, lymphocyte .c 1551 to 1673 123 to 1       123/123
(100 %)
0 diff
(100 %id)
CB242278 Human Lung Epithelial cells, lung .c 1551 to 1681 149 to 19   AAA   131/131
(100 %)
0 diff
(100 %id)
CA748711 Alveolar Macrophage, lung .c 1551 to 1678 144 to 17   AAA   128/128
(100 %)
0 diff
(100 %id)
CD367421 Alveolar Macrophage, lung .c 1551 to 1678 146 to 19   AAA   128/128
(100 %)
0 diff
(100 %id)
CD369902 Alveolar Macrophage, lung .c 1551 to 1672 140 to 19   AAA   122/122
(100 %)
0 diff
(100 %id)
H06303 whole brain .c 1552 to 1681 142 to 12   AAA   131/131
(100 %)
1 diff
(99.3 %id)
BQ015000 Chondrosarcoma, Left Pubic Bone .c 1552 to 1672 139 to 19   AAA   121/121
(100 %)
0 diff
(100 %id)
BU631089 cell lines, Chondrosarcoma .c 1552 to 1678 145 to 19   AAA   127/127
(100 %)
0 diff
(100 %id)
BU618628 Cell Line, Chondrosarcoma .c 1552 to 1678 145 to 19   AAA   127/127
(100 %)
0 diff
(100 %id)
CA307131 Alveolar Macrophage, lung .c 1552 to 1681 148 to 19   AAA   130/130
(100 %)
0 diff
(100 %id)
CD365612 Alveolar Macrophage, lung .c 1552 to 1672 139 to 19   AAA   121/121
(100 %)
0 diff
(100 %id)
CA425042 cell lines, Chondrosarcoma .c 1553 to 1672 138 to 19   AAA   120/120
(100 %)
2 diff
(98.4 %id)
CA428824 Cell Line, Chondrosarcoma .c 1553 to 1681 147 to 19   AAA   129/129
(100 %)
1 diff
(99.3 %id)
AI680381 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .c 1554 to 1673 120 to 1       120/120
(100 %)
0 diff
(100 %id)
AI640721 adenocarcinoma, Pancreas .c 1554 to 1683 131 to 2       130/131
(99 %)
0 diff
(100 %id)
AW591694 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 1554 to 1683 137 to 8       130/141
(92 %)
0 diff
(100 %id)
AI271563 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1558 to 1681 143 to 20   AAA   124/124
(100 %)
0 diff
(100 %id)
AI383041 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1560 to 1684 125 to 1       125/125
(100 %)
0 diff
(100 %id)
AI537937 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 1585 to 1673 89 to 1       89/89
(100 %)
0 diff
(100 %id)
AI687258 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .c 1585 to 1683 99 to 1       99/99
(100 %)
0 diff
(100 %id)
DB084472 testis .d 1 to 554 4 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB053569 testis .d 1 to 567 3 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DC410689 thymus .d 1 to 455 2 to 456       456/456
(100 %)
0 diff
(100 %id)
DA009368 adrenal gland .d 1 to 533 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
CR621090 Neuroblastoma Cot 50-normalized .d 1 to 1641 1 to 1641 exact tiling clone,   1641/1641
(100 %)
0 diff
(100 %id)
BX333791 Neuroblastoma Cot 50-normalized .d 1 to 956 1 to 952       952/952
(100 %)
18 diff
(98.2 %id)
BX345261 Neuroblastoma Cot 50-normalized .d 1 to 957 1 to 957       957/957
(100 %)
0 diff
(100 %id)
DA482938   .d 1 to 583 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA640309 Liver .d 1 to 531 2 to 532   capped   531/531
(100 %)
1 diff
(99.9 %id)
BP352637   .d 3 to 609 1 to 607       607/607
(100 %)
3 diff
(99.6 %id)
TI_57151798   .d 6 to 908 31 to 942       909/944
(96 %)
20 diff
(97.9 %id)
AU099303   .d 7 to 306 1 to 300       300/300
(100 %)
0 diff
(100 %id)
CV806626 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .d 9 to 667 1 to 659       659/889
(74 %)
15 diff
(98.4 %id)
TI_57233225   .d 9 to 681 27 to 706       677/706
(95 %)
16 diff
(97.8 %id)
BX378883 Placenta Cot 25-normalized .d 14 to 839 1 to 829       826/829
(99 %)
4 diff
(99.6 %id)
CR595672 Neuroblastoma Cot 10-normalized .d 15 to 1649 1 to 1635 exact     1635/1635
(100 %)
0 diff
(100 %id)
CR599485 Neuroblastoma Cot 25-normalized .d 15 to 1625 1 to 1611 exact     1611/1611
(100 %)
0 diff
(100 %id)
BX352779 Neuroblastoma Cot 10-normalized .d 15 to 936 1 to 921       921/921
(100 %)
1 diff
(99.9 %id)
BX333712 Neuroblastoma Cot 25-normalized .d 15 to 874 1 to 857   fully sequenced,   857/857
(100 %)
0 diff
(100 %id)
AK021419 whole embryo, mainly head .d 18 to 1654 1 to 1637 exact available from FLJ,   1637/1637
(100 %)
1 diff
(100.0 %id)
AU116881 whole embryo, mainly head .d 19 to 811 2 to 805   capped   804/805
(99 %)
15 diff
(98.2 %id)
BE408322 choriocarcinoma, placenta .d 19 to 318 1 to 301       301/301
(100 %)
3 diff
(99.1 %id)
TI_57163326   .d 19 to 825 30 to 832       802/832
(96 %)
20 diff
(97.6 %id)
BM757789 stomach .d 21 to 318 10 to 307       298/298
(100 %)
1 diff
(99.7 %id)
BG474422 eye, retinoblastoma .d 22 to 338 1 to 317       317/317
(100 %)
1 diff
(99.7 %id)
BX421227 B cells (Ramos cell line) .d 24 to 1112 1 to 1087       1087/1087
(100 %)
15 diff
(98.7 %id)
BX424785 B cells (Ramos cell line) .d 24 to 905 1 to 882       882/882
(100 %)
0 diff
(100 %id)
AA312225   .d 26 to 489 1 to 464       464/464
(100 %)
1 diff
(99.8 %id)
CR624865 Placenta Cot 25-normalized .d 28 to 1621 1 to 1594 exact     1594/1594
(100 %)
0 diff
(100 %id)
BX335605 Placenta Cot 25-normalized .d 28 to 741 1 to 714   fully sequenced,   714/714
(100 %)
3 diff
(99.6 %id)
CX871169 embryonic stem .d 29 to 790 1 to 762       762/771
(98 %)
0 diff
(100 %id)
BI117351 lung, small cell carcinoma .d 34 to 338 1 to 305       305/305
(100 %)
0 diff
(100 %id)
CN272295 embryonic stem cells, DMSO-treated H9 cellline .d 36 to 380 1 to 345       345/345
(100 %)
0 diff
(100 %id)
BE255010 eye, retinoblastoma .d 36 to 318 1 to 283       283/283
(100 %)
0 diff
(100 %id)
CR621083 Placenta Cot 25-normalized .d 37 to 1618 1 to 1582 exact     1582/1582
(100 %)
0 diff
(100 %id)
BX338246 Placenta Cot 25-normalized .d 37 to 821 1 to 785   fully sequenced,   785/785
(100 %)
2 diff
(99.8 %id)
BE407182 choriocarcinoma, placenta .d 38 to 318 1 to 281       281/281
(100 %)
0 diff
(100 %id)
BM926624 pooled lung and spleen .d 38 to 1031 16 to 1020       1002/1113
(90 %)
29 diff
(97.4 %id)
BX326626 Placenta Cot 25-normalized .d 40 to 911 874 to 1       874/874
(100 %)
11 diff
(98.8 %id)
BU556460 ovary, teratocarcinoma, cell line .d 40 to 790 1 to 759       759/967
(78 %)
20 diff
(98.0 %id)
BU556527 ovary, teratocarcinoma, cell line .d 40 to 798 1 to 768       768/1015
(75 %)
16 diff
(98.5 %id)
AJ011738   .d 43 to 1654 1 to 1612 exact     1612/1612
(100 %)
0 diff
(100 %id)
BF794033 adrenal cortex carcinoma, cell line, adrenal gland .d 43 to 840 1 to 797       797/849
(93 %)
14 diff
(98.4 %id)
BG336886 leiomyosarcoma cell line, uterus .d 43 to 338 1 to 295       295/295
(100 %)
1 diff
(99.7 %id)
BM562033 leukocyte .d 43 to 913 1 to 878       878/1067
(82 %)
29 diff
(97.3 %id)
BE304628 adenocarcinoma cell line, colon .d 47 to 318 1 to 272       272/272
(100 %)
0 diff
(100 %id)
CX872802 embryonic stem .d 47 to 923 1 to 877       877/877
(100 %)
0 diff
(100 %id)
DR159541 human embryonic stem cells differentiated toan early endodermal cell type .d 49 to 1603 1 to 708       708/708
(100 %)
3 diff
(99.6 %id)
BU194177 melanotic melanoma, skin .d 52 to 924 1 to 873       873/873
(100 %)
11 diff
(98.8 %id)
AI804887 Prostate .d 53 to 396 345 to 1       345/345
(100 %)
3 diff
(99.2 %id)
BE731096 choriocarcinoma, placenta .d 60 to 318 1 to 259       259/259
(100 %)
1 diff
(99.7 %id)
BE281546 choriocarcinoma, placenta .d 64 to 318 1 to 255       255/255
(100 %)
0 diff
(100 %id)
DB035907 testis .d 65 to 645 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
BG825149 muscle, rhabdomyosarcoma .d 66 to 338 1 to 272       272/272
(100 %)
1 diff
(99.7 %id)
BI114406 muscle, rhabdomyosarcoma .d 66 to 338 1 to 273       273/273
(100 %)
0 diff
(100 %id)
TI_154185619   .d 74 to 865 115 to 886       772/959
(80 %)
25 diff
(97.4 %id)
CN272297 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 75 to 375 1 to 300       300/300
(100 %)
1 diff
(99.7 %id)
DB049826 testis .d 86 to 654 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
CX753062 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .d 88 to 865 1 to 770     Submitted on the opposite strand 770/774
(99 %)
12 diff
(98.5 %id)
TI_2194631156   .d 130 to 1010 892 to 13       880/1036
(84 %)
3 diff
(99.8 %id)
BC117114 Brain, cerebral cortex, PCR rescued clones .d 135 to 1505 1 to 1371 exact     1371/1371
(100 %)
0 diff
(100 %id)
BC143667 Brain, cerebral cortex, PCR rescued clones .d 135 to 1505 1 to 1371 exact     1371/1371
(100 %)
0 diff
(100 %id)
BF770992 epid_tumor .d 142 to 520 379 to 1     Submitted on the opposite strand 379/381
(99 %)
1 diff
(99.8 %id)
BE393530 endometrium, adenocarcinoma cell line, uterus .d 166 to 318 1 to 153       153/153
(100 %)
0 diff
(100 %id)
TI_2194631154   .d 169 to 1200 1040 to 8       1033/1040
(99 %)
14 diff
(98.7 %id)
AB017523   .d 190 to 1320 1 to 1131 exact     1131/1131
(100 %)
0 diff
(100 %id)
BG469782 adenocarcinoma cell line, colon .d 198 to 338 1 to 141       141/141
(100 %)
1 diff
(99.3 %id)
BE294308 muscle, rhabdomyosarcoma .d 218 to 318 1 to 101       101/101
(100 %)
0 diff
(100 %id)
R11799 whole brain .d 240 to 332 1 to 93       93/94
(98 %)
1 diff
(99.0 %id)
BX325494 Neuroblastoma Cot 50-normalized .d 281 to 1148 1 to 861       861/861
(100 %)
23 diff
(97.4 %id)
CR621760 Placenta Cot 25-normalized .d 283 to 1624 298 to 1639 exact     1639/1639
(100 %)
0 diff
(100 %id)
BX357826 Placenta Cot 25-normalized .d 283 to 742 298 to 757   fully sequenced,   757/757
(100 %)
0 diff
(100 %id)
DC354673 lung .d 283 to 559 307 to 583       583/583
(100 %)
0 diff
(100 %id)
NM_001007468.1   .d 283 to 1657 301 to 1675 exact RefSeq, AAA   1675/1675
(100 %)
0 diff
(100 %id)
BX368751 Placenta Cot 25-normalized .d 311 to 1083 1 to 771       771/772
(99 %)
21 diff
(97.3 %id)
TI_2194628882   .d 318 to 1505 1227 to 57     Submitted on the opposite strand 1171/1277
(91 %)
26 diff
(98.0 %id)
AW239247 lung, cell line .d 345 to 972 1 to 628       628/628
(100 %)
7 diff
(98.9 %id)
BE612477 adenocarcinoma, ovary .d 389 to 1115 1 to 732       732/797
(91 %)
9 diff
(98.9 %id)
BE702831 nervous_normal .d 393 to 752 3 to 360       358/360
(99 %)
7 diff
(98.1 %id)
TI_154144277   .d 399 to 925 84 to 610       527/528
(99 %)
3 diff
(99.5 %id)
TI_1320132555   .d 405 to 1502 1 to 1097       1097/1232
(89 %)
12 diff
(99.1 %id)
AA069245 Pancreas .d 410 to 634 1 to 225       225/231
(97 %)
1 diff
(99.6 %id)
TI_2194631155   .d 413 to 1505 1 to 1098       1098/1154
(95 %)
32 diff
(97.3 %id)
TI_1320130157   .d 419 to 1506 1144 to 66       1079/1225
(88 %)
19 diff
(98.5 %id)
CD616214   .d 424 to 1030 8 to 615       608/617
(98 %)
7 diff
(98.9 %id)
CN272294 embryonic stem cells, cell lines H1, H7, andH9 .d 428 to 1011 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BG032753 breast, mammary adenocarcinoma, cell line .d 440 to 1146 1 to 706       706/706
(100 %)
1 diff
(99.9 %id)
BX407238 brain, fetal brain .d 442 to 1379 1 to 931       933/1016
(91 %)
34 diff
(96.7 %id)
BX112404 liver and spleen .d 452 to 1214 1 to 765       765/765
(100 %)
4 diff
(99.5 %id)
T97942 liver and spleen .d 452 to 778 14 to 346       333/356
(93 %)
16 diff
(95.6 %id)
TI_57146060   .d 462 to 1281 62 to 883       822/951
(86 %)
19 diff
(98.1 %id)
BI759235 pooled colon, kidney, stomach .d 467 to 1281 1 to 818       818/886
(92 %)
13 diff
(98.6 %id)
AA714745 germinal center B-cells, tonsil .d 477 to 866 1 to 390     Submitted on the opposite strand 390/390
(100 %)
2 diff
(99.5 %id)
CN272298 embryonic stem cells, cell lines H1, H7, andH9 .d 481 to 1119 1 to 639       639/639
(100 %)
2 diff
(99.7 %id)
CD616215   .d 509 to 1178 680 to 11       670/680
(98 %)
0 diff
(100 %id)
AW361513 colon .d 510 to 894 16 to 400       385/400
(96 %)
6 diff
(98.5 %id)
AW361518 colon .d 512 to 903 1 to 392       392/392
(100 %)
1 diff
(99.8 %id)
BX346553 Neuroblastoma Cot 50-normalized .d 517 to 1338 814 to 1       814/814
(100 %)
27 diff
(96.7 %id)
BX407382 brain, fetal brain .d 519 to 1345 827 to 1       827/827
(100 %)
7 diff
(99.2 %id)
BX416710 neuroblastoma .d 520 to 1621 1102 to 4       1099/1103
(99 %)
36 diff
(96.8 %id)
BX428261 brain, fetal brain .d 530 to 1633 1095 to 1       1095/1108
(98 %)
23 diff
(98.0 %id)
BX421226 B cells (Ramos cell line) .d 533 to 1610 1076 to 1       1076/1083
(99 %)
26 diff
(97.6 %id)
TI_2194629587   .d 537 to 1505 1010 to 57     Submitted on the opposite strand 957/1158
(82 %)
15 diff
(98.8 %id)
BG423270 Kidney, renal cell adenocarcinoma .d 539 to 1213 1 to 673       673/673
(100 %)
5 diff
(99.3 %id)
BM791890 Ascites, stomach .d 542 to 1197 1 to 656       656/656
(100 %)
0 diff
(100 %id)
BE392117 endometrium, adenocarcinoma cell line, uterus .d 543 to 1081 1 to 541       541/541
(100 %)
2 diff
(99.7 %id)
BQ049236 lymph, lymphoma, cell line .d 547 to 1429 27 to 921       895/1038
(86 %)
30 diff
(97.2 %id)
CB130236 Liver .d 587 to 1129 1 to 543       543/543
(100 %)
0 diff
(100 %id)
TI_2194631148   .d 612 to 1504 12 to 904       893/1001
(89 %)
11 diff
(99.0 %id)
CF453981 peripheral nervous system .d 620 to 1442 35 to 858       824/863
(95 %)
11 diff
(98.8 %id)
AL045374 testis .d 643 to 1022 1 to 383       382/383
(99 %)
10 diff
(97.4 %id)
BF343248 brain, glioblastoma with EGFR amplification .d 643 to 1308 1 to 662       662/882
(75 %)
11 diff
(98.8 %id)
BG924572 cartilage .d 662 to 1256 87 to 681       595/613
(97 %)
6 diff
(99.1 %id)
BX424665 neuroblastoma .d 664 to 1620 955 to 1       955/955
(100 %)
7 diff
(99.3 %id)
BX352778 Neuroblastoma Cot 10-normalized .d 665 to 1637 971 to 1       971/971
(100 %)
14 diff
(98.6 %id)
BX345260 Neuroblastoma Cot 50-normalized .d 665 to 1620 963 to 6       958/963
(99 %)
4 diff
(99.6 %id)
BQ063517 lymph, lymphoma, cell line .d 665 to 1442 1 to 780       780/1048
(74 %)
8 diff
(99.3 %id)
TI_57163578   .d 674 to 1427 34 to 786       753/786
(95 %)
6 diff
(99.3 %id)
BX374438 Neuroblastoma Cot 10-normalized .d 675 to 1612 936 to 1       936/940
(99 %)
7 diff
(99.3 %id)
BE268926 Burkitt lymphoma, lymph .d 675 to 1428 29 to 782       754/788
(95 %)
30 diff
(96.2 %id)
BQ054630 lymph, lymphoma, cell line .d 675 to 1442 1 to 773       773/996
(77 %)
12 diff
(98.8 %id)
BQ060048 lymph, lymphoma, cell line .d 675 to 1372 1 to 701       701/993
(70 %)
19 diff
(98.1 %id)
BQ061762 lymph, lymphoma, cell line .d 675 to 1420 1 to 747       747/1022
(73 %)
3 diff
(99.8 %id)
BQ066660 lymph, lymphoma, cell line .d 675 to 1420 1 to 746       746/1061
(70 %)
1 diff
(100.0 %id)
BX428394 neuroblastoma .d 677 to 1437 1 to 759   AAA   759/920
(82 %)
10 diff
(99.0 %id)
BI836023 pooled pancreas and spleen .d 677 to 1427 1 to 751       751/751
(100 %)
2 diff
(99.8 %id)
BF970067 adrenal cortex carcinoma, cell line, adrenal gland .d 678 to 1468 1 to 776       776/798
(97 %)
24 diff
(97.0 %id)
BE561762 Burkitt lymphoma, lymph .d 680 to 1487 33 to 828       796/992
(80 %)
31 diff
(96.9 %id)
CD616210   .d 681 to 939 1 to 260       260/260
(100 %)
2 diff
(99.3 %id)
BF128799 B-cells, primary B-cells from tonsils (cell line) .d 681 to 1440 1 to 751       751/751
(100 %)
16 diff
(97.9 %id)
BQ642732 lymph, lymphoma, cell line .d 681 to 1420 1 to 740       740/766
(96 %)
2 diff
(99.8 %id)
BM051501 Burkitt lymphoma, lymph .d 682 to 1380 1 to 699       699/699
(100 %)
2 diff
(99.8 %id)
BU856651 adenocarcinoma, cell line, breast .d 685 to 1421 1 to 737       737/765
(96 %)
1 diff
(99.9 %id)
BE397704 Burkitt lymphoma, lymph .d 687 to 1444 14 to 763       750/766
(97 %)
22 diff
(97.2 %id)
BX424784 B cells (Ramos cell line) .d 689 to 1628 942 to 1       942/942
(100 %)
2 diff
(99.8 %id)
BI480633 Native Retinal Pigment Epithelium sheets, retina .d 691 to 1331 12 to 653       642/653
(98 %)
7 diff
(99.0 %id)
BE264167 lung, small cell carcinoma .d 691 to 1418 1 to 724       724/744
(97 %)
12 diff
(98.4 %id)
BE263808 lung, small cell carcinoma .d 691 to 1382 1 to 689       689/692
(99 %)
21 diff
(97.0 %id)
BF882378 lung_tumor .d 692 to 971 1 to 280       280/280
(100 %)
0 diff
(100 %id)
BX449547 B cells (Ramos cell line) .d 692 to 1478 10 to 792       783/906
(86 %)
24 diff
(97.4 %id)
BX428407 placenta .d 694 to 1514 9 to 831       823/897
(91 %)
35 diff
(96.1 %id)
CD579377 brain .d 695 to 1522 1 to 807       807/995
(81 %)
39 diff
(96.1 %id)
BP214280 corpus callosum .d 696 to 1277 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BX424798 B cells (Ramos cell line) .d 697 to 1635 941 to 1       941/941
(100 %)
8 diff
(99.2 %id)
BE268125 Burkitt lymphoma, lymph .d 697 to 1232 1 to 539       539/539
(100 %)
1 diff
(99.9 %id)
BE268241 Burkitt lymphoma, lymph .d 697 to 1197 1 to 501       501/503
(99 %)
1 diff
(99.9 %id)
BE398086 Burkitt lymphoma, lymph .d 697 to 1307 1 to 612       612/612
(100 %)
6 diff
(99.1 %id)
BI225012 Burkitt lymphoma, lymph .d 697 to 1414 1 to 718       718/720
(99 %)
9 diff
(98.8 %id)
BI225326 Burkitt lymphoma, lymph .d 697 to 1389 1 to 694       694/694
(100 %)
5 diff
(99.3 %id)
BI225835 Burkitt lymphoma, lymph .d 697 to 1433 1 to 736       736/736
(100 %)
4 diff
(99.5 %id)
BX325474 Neuroblastoma Cot 10-normalized .d 698 to 1421 1 to 722       722/887
(81 %)
20 diff
(97.8 %id)
BE396438 Burkitt lymphoma, lymph .d 701 to 1478 1 to 777       777/994
(78 %)
25 diff
(97.5 %id)
BG398000 B-cells, primary B-cells from tonsils (cell line) .d 701 to 1478 1 to 765       765/945
(80 %)
26 diff
(97.3 %id)
BE267643 Burkitt lymphoma, lymph .d 707 to 1321 1 to 613       613/613
(100 %)
5 diff
(99.2 %id)
BE268080 Burkitt lymphoma, lymph .d 707 to 1064 1 to 358       358/358
(100 %)
1 diff
(99.8 %id)
BE560526 Burkitt lymphoma, lymph .d 707 to 1511 1 to 812       812/836
(97 %)
30 diff
(96.5 %id)
BX335604 Placenta Cot 25-normalized .d 711 to 1582 909 to 40   fully sequenced,   870/909
(95 %)
7 diff
(99.3 %id)
BX357825 Placenta Cot 25-normalized .d 712 to 1624 915 to 1   fully sequenced,   915/915
(100 %)
8 diff
(99.2 %id)
BP420000 small intestine .d 713 to 1214 1 to 503     Submitted on the opposite strand 503/503
(100 %)
1 diff
(99.9 %id)
BM352221 Pancreas, Purified pancreatic islet .d 716 to 1119 1 to 403       403/403
(100 %)
4 diff
(99.1 %id)
BE267929 Burkitt lymphoma, lymph .d 716 to 1344 1 to 629       629/632
(99 %)
3 diff
(99.6 %id)
BE513806 Burkitt lymphoma, lymph .d 716 to 1379 1 to 661       661/663
(99 %)
6 diff
(99.1 %id)
BE514144 Burkitt lymphoma, lymph .d 717 to 1407 1 to 682       682/729
(93 %)
17 diff
(97.7 %id)
BE561352 Burkitt lymphoma, lymph .d 717 to 1471 1 to 745       745/746
(99 %)
13 diff
(98.3 %id)
BM841815 lymph node, stomach .d 719 to 1234 1 to 516       516/516
(100 %)
0 diff
(100 %id)
BM842594 lymph node, stomach .d 719 to 1336 1 to 618       618/618
(100 %)
0 diff
(100 %id)
BX331227 Neuroblastoma Cot 10-normalized .d 721 to 1638 920 to 1       920/920
(100 %)
5 diff
(99.5 %id)
BX326918 Placenta Cot 25-normalized .d 723 to 1445 1 to 725       725/733
(98 %)
5 diff
(99.4 %id)
BP226257   .d 756 to 1323 1 to 568       568/568
(100 %)
0 diff
(100 %id)
BX338245 Placenta Cot 25-normalized .d 760 to 1618 857 to 1   fully sequenced,   857/857
(100 %)
1 diff
(99.9 %id)
BM823889 Ascites, stomach .d 762 to 1278 1 to 517       517/517
(100 %)
0 diff
(100 %id)
CN272301 embryonic stem cells, DMSO-treated H9 cellline .d 770 to 1161 1 to 392       392/392
(100 %)
0 diff
(100 %id)
BX357213 Placenta Cot 25-normalized .d 791 to 1624 836 to 1       836/836
(100 %)
8 diff
(99.1 %id)
BX451213 brain, fetal brain .d 793 to 1445 1 to 653       653/653
(100 %)
9 diff
(98.7 %id)
BM931937 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 800 to 1429 1 to 630       630/630
(100 %)
0 diff
(100 %id)
TI_2194631150   .d 805 to 1505 1 to 702       702/1041
(67 %)
5 diff
(99.6 %id)
BU501149 eye, normal pigmented retinal epithelium .d 808 to 1424 1 to 617       617/636
(97 %)
1 diff
(99.9 %id)
BX333711 Neuroblastoma Cot 25-normalized .d 844 to 1625 783 to 1   fully sequenced,   783/783
(100 %)
8 diff
(99.0 %id)
BE844173 testis_normal .d 911 to 1450 541 to 1       541/541
(100 %)
5 diff
(99.1 %id)
BQ668908 epidermoid carcinoma, cell line, salivary gland .d 945 to 1440 1 to 497       497/501
(99 %)
2 diff
(99.7 %id)
BQ187132 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 956 to 1439 1 to 484       484/484
(100 %)
0 diff
(100 %id)
BM722815 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 973 to 1443 1 to 471       471/471
(100 %)
0 diff
(100 %id)
CR977873 T-Lymphocytes .d 1026 to 1436 1 to 410       410/411
(99 %)
2 diff
(99.6 %id)
BM822955 stomach .d 1079 to 1510 1 to 432       432/432
(100 %)
4 diff
(99.1 %id)
BM821364 stomach .d 1080 to 1453 1 to 374       374/374
(100 %)
2 diff
(99.5 %id)
AI695080 carcinoid, lung .d 1089 to 1317 1 to 229     Submitted on the opposite strand 229/229
(100 %)
0 diff
(100 %id)
BG981133 colon_normal .d 1095 to 1325 1 to 231       231/231
(100 %)
0 diff
(100 %id)
CB151872 cervix, Uterine .d 1103 to 1430 1 to 328       328/328
(100 %)
1 diff
(99.7 %id)
BM726446 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 1105 to 1443 1 to 340       340/340
(100 %)
3 diff
(99.2 %id)
AA481681 ovarian tumor, ovary .d 1117 to 1229 1 to 113   fully sequenced,   113/113
(100 %)
1 diff
(99.2 %id)
BX378488 Placenta Cot 25-normalized .d 1147 to 1589 442 to 1       442/442
(100 %)
4 diff
(99.1 %id)
AA481444 ovarian tumor, ovary .d 1199 to 1654 456 to 1   fully sequenced,   456/456
(100 %)
4 diff
(99.2 %id)
EC480433 Prostate .d 1307 to 1407 1 to 101       101/101
(100 %)
0 diff
(100 %id)
EC481475 Prostate .d 1307 to 1407 1 to 102       102/102
(100 %)
1 diff
(99.1 %id)
EC454528 Prostate .d 1390 to 1496 1 to 107       107/107
(100 %)
0 diff
(100 %id)
AL045375 testis .d 1511 to 1650 199 to 60   AAA   140/140
(100 %)
0 diff
(100 %id)
BU740641 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 1513 to 1654 159 to 19   AAA   141/141
(100 %)
1 diff
(99.3 %id)
CK300350 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 1513 to 1654 160 to 19   AAA   142/145
(97 %)
0 diff
(100 %id)
AU143850 whole embryo, mainly head .d 1517 to 1654 138 to 1       138/140
(98 %)
1 diff
(99.3 %id)
BU740499 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 1524 to 1657 149 to 16   AAA   134/134
(100 %)
1 diff
(99.3 %id)
R37717 whole brain .d 1525 to 1657 147 to 16   tiling clone, AAA   132/132
(100 %)
1 diff
(99.3 %id)
AA069183 Pancreas .d 1540 to 1645 105 to 1       105/105
(100 %)
1 diff
(99.1 %id)
BG479632 choriocarcinoma, placenta .e 1 to 341 4 to 344   tiling clone,   344/344
(100 %)
1 diff
(99.8 %id)
BE397262 Burkitt lymphoma, lymph .e 9 to 321 24 to 336       313/336
(93 %)
3 diff
(99.2 %id)
BX374439 Neuroblastoma Cot 10-normalized .e 13 to 925 1 to 913       913/913
(100 %)
4 diff
(99.6 %id)
TI_57218939   .e 16 to 768 67 to 820       754/823
(91 %)
14 diff
(98.3 %id)
BG481000 choriocarcinoma, placenta .e 20 to 341 1 to 322       322/322
(100 %)
1 diff
(99.7 %id)
BI836818 pooled pancreas and spleen .e 50 to 651 1 to 610   tiling clone,   610/736
(82 %)
20 diff
(97.3 %id)
BG337903 leiomyosarcoma cell line, uterus .e 54 to 341 1 to 288       288/288
(100 %)
1 diff
(99.7 %id)
TI_2194629261   .e 130 to 1266 60 to 1190 V33G G34N N35Y Y36L L37R ... tiling clone, Submitted on the opposite strand 1129/1288
(87 %)
19 diff
(98.6 %id)
TI_2194629593   .e 130 to 1135 58 to 1052     Submitted on the opposite strand 995/1147
(86 %)
21 diff
(98.2 %id)
BX446072 T cells (Jurkat cell line) .e 161 to 959 1 to 799       799/799
(100 %)
4 diff
(99.5 %id)
BG754904 B-cells, primary B-cells from tonsils (cell line) .e 232 to 341 1 to 110       110/110
(100 %)
1 diff
(99.1 %id)
BG705851 brain, hypothalamus .e 286 to 647 306 to 667       667/668
(99 %)
6 diff
(99.2 %id)
BI463166 testis .e 286 to 564 309 to 587       587/587
(100 %)
4 diff
(99.4 %id)
AK299411 tongue .f 1 to 1153 1 to 1153 Q251R tiling clone,   1153/1153
(100 %)
1 diff
(100.0 %id)
AK303620 thymus .g 1 to 1354 2 to 1355 P236R tiling clone,   1355/1355
(100 %)
1 diff
(100.0 %id)
BF841429 head_neck .g 354 to 797 448 to 4     Submitted on the opposite strand 445/449
(99 %)
0 diff
(100 %id)
DB147028 thymus .g 565 to 1149 2 to 588   capped   587/587
(100 %)
3 diff
(99.5 %id)
DA127244 cerebellum .g 676 to 1196 2 to 521   capped   520/520
(100 %)
2 diff
(99.7 %id)
BG945949 bladder_tumor .g 820 to 1073 258 to 2   tiling clone,   257/258
(99 %)
0 diff
(100 %id)
BF842849 head_neck .g 927 to 1228 3 to 303       301/309
(97 %)
4 diff
(98.8 %id)
AL389878   .h 1 to 685 1 to 685 V33G G34N N35Y Y36L L37R ... tiling clone, AAA   685/685
(100 %)
1 diff
(99.9 %id)
CX865273 embryonic stem .h 77 to 551 168 to 639     Submitted on the opposite strand 472/631
(74 %)
11 diff
(98.3 %id)
AA887851 colon, colon tumor RER+ .h 425 to 685 260 to 1       260/260
(100 %)
1 diff
(99.7 %id)
BI014202 lung_tumor .i 1 to 539 545 to 10   tiling clone,   536/545
(98 %)
0 diff
(100 %id)
DC376250 brain .i 125 to 682 1 to 558   tiling clone,   558/558
(100 %)
2 diff
(99.7 %id)
BX507689   .i 160 to 730 1 to 571   tiling clone,   571/571
(100 %)
3 diff
(99.5 %id)
AY562997   .i 178 to 425 1 to 248       248/248
(100 %)
0 diff
(100 %id)
BX491687   .j 1 to 449 1 to 449   tiling clone,   449/449
(100 %)
4 diff
(99.2 %id)
CN272296 embryonic stem cells, DMSO-treated H9 cellline .j 316 to 975 9 to 668 exact tiling clone,   660/668
(98 %)
6 diff
(99.2 %id)
AY207471   .k 1 to 269 1 to 269 exact tiling clone,   269/269
(100 %)
0 diff
(100 %id)
AY207470   .l 1 to 242 1 to 242 exact tiling clone,   242/242
(100 %)
0 diff
(100 %id)
BG015202 placenta_normal .m-u 1 to 318 102 to 424   tiling clone,   323/424
(76 %)
6 diff
(98.6 %id)
BI754199 brain .m-u 108 to 995 1 to 883 exact tiling clone,   883/891
(99 %)
13 diff
(98.6 %id)
TI_57217623   .m-u 108 to 995 111 to 993 exact     883/1001
(88 %)
13 diff
(98.8 %id)
CN290498 embryonic stem cells, DMSO-treated H9 cellline .m-u 130 to 733 1 to 604 exact tiling clone,   604/604
(100 %)
0 diff
(100 %id)
DB106404 thymus .m-u 169 to 542 189 to 562 exact capped   374/561
(66 %)
6 diff
(99.0 %id)
AY207472   .n 1 to 85 1 to 85 exact tiling clone,   85/85
(100 %)
0 diff
(100 %id)
BF986804 placenta_normal Gene SMARCB1, variant not shown              
R47963 breast Gene SMARCB1, variant not shown              
R48075 breast Gene SMARCB1, variant not shown              
R48183 breast Gene SMARCB1, variant not shown              
R48184 breast Gene SMARCB1, variant not shown              
BF436383 breast, invasive ductal carcinoma, 3 pooled samples Gene SMARCB1, variant not shown       AAA      
202 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI