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Gene SMARCAD1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
267 supporting clones for gene SMARCAD1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AL704040 human skeletal muscle .a 1 to 503 1 to 504   tiling clone,   504/504
(100 %)
1 diff
(99.9 %id)
BG721915 testis .a 16 to 630 1 to 620       620/620
(100 %)
31 diff
(95.0 %id)
BG721713 testis .a 21 to 612 1 to 596       596/599
(99 %)
14 diff
(97.7 %id)
NM_001128429.1   .a 21 to 5118 1 to 5098 exact RefSeq, AAA   5098/5098
(100 %)
0 diff
(100 %id)
BP229103 brain .a 22 to 603 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
DB159849 thymus .a 22 to 621 2 to 605   capped   604/604
(100 %)
4 diff
(99.4 %id)
DB207879 trachea .a 22 to 482 2 to 462   capped   461/461
(100 %)
1 diff
(99.8 %id)
DB214982 trachea .a 24 to 571 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
CD653143 Embryonic Stem cells .a 25 to 768 48 to 785       738/795
(92 %)
14 diff
(98.3 %id)
DA094000 cerebellum .a 27 to 551 2 to 530   capped   529/537
(98 %)
7 diff
(98.7 %id)
DB095120 testis .a 38 to 635 2 to 600   capped   599/599
(100 %)
2 diff
(99.7 %id)
BI460287 testis .a 40 to 696 1 to 655       655/656
(99 %)
6 diff
(99.1 %id)
CD643738 Embryonic Stem cells .a 41 to 788 11 to 754       744/817
(91 %)
19 diff
(97.7 %id)
BC045534 testis .a 46 to 4646 1 to 4601 S247N V301A P351Q V974A tiling clone, available from MGC, AAA   4601/4601
(100 %)
8 diff
(99.9 %id)
DB447080 testis .a 48 to 467 1 to 420       420/420
(100 %)
0 diff
(100 %id)
DA238193 brain .a 55 to 647 2 to 595   capped   594/594
(100 %)
2 diff
(99.7 %id)
BP248484 Kidney .a 56 to 638 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP231428 muscle .a 79 to 660 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA797534 brain .a 81 to 640 2 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
DB069157 testis .a 168 to 724 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BF679602 Prostate .a 192 to 662 1 to 470       470/470
(100 %)
3 diff
(99.4 %id)
BP278428   .b 1 to 580 5 to 583       583/583
(100 %)
2 diff
(99.7 %id)
NM_001128430.1   .b 1 to 5016 5 to 5020 exact RefSeq, AAA   5020/5020
(100 %)
0 diff
(100 %id)
BP315831 mammary gland .b 1 to 579 5 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA798320 brain .b 1 to 541 5 to 545   capped   544/552
(98 %)
1 diff
(99.9 %id)
AK027490   .b 1 to 2280 2 to 2280   available from FLJ,   2280/2280
(100 %)
1 diff
(100.0 %id)
BP283358 bone marrow .b 1 to 582 2 to 582       582/582
(100 %)
4 diff
(99.4 %id)
DA731029   .b 1 to 879 2 to 881   capped   880/890
(98 %)
6 diff
(99.4 %id)
DA768179 brain .b 1 to 531 2 to 531   capped   530/530
(100 %)
2 diff
(99.7 %id)
DA800218 brain .b 1 to 548 2 to 549   tiling clone, capped   548/548
(100 %)
0 diff
(100 %id)
BP337597 coronary artery .b 3 to 584 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BP281449 bone marrow .b 4 to 620 1 to 617       617/617
(100 %)
4 diff
(99.4 %id)
BG400719 Kidney .b 13 to 715 1 to 702   available from MGC,   702/717
(97 %)
9 diff
(98.8 %id)
BC017953 Kidney .b 14 to 1106 1 to 1093   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1093/1116
(97 %)
4 diff
(99.7 %id)
DB070887 testis .b 14 to 553 2 to 541   capped   540/540
(100 %)
2 diff
(99.7 %id)
DB218964 trachea .b 14 to 567 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB067862 testis .b 15 to 538 2 to 526   capped   525/525
(100 %)
2 diff
(99.7 %id)
AL701475 human skeletal muscle .b 26 to 191 1 to 166       166/166
(100 %)
0 diff
(100 %id)
CD654703 Embryonic Stem cells .b 36 to 715 7 to 686       680/861
(78 %)
13 diff
(98.5 %id)
CN352241 embryonic stem cells, cell lines H1, H7, andH9 .b 44 to 630 1 to 588       588/588
(100 %)
1 diff
(99.9 %id)
DA220622 brain .b 85 to 637 11 to 563   capped   553/554
(99 %)
1 diff
(99.9 %id)
BP380705   .b 104 to 667 1 to 565       565/569
(99 %)
5 diff
(99.2 %id)
AB032948 brain .b 111 to 5015 1 to 4905 exact tiling clone, available from KIAA,   4905/4905
(100 %)
0 diff
(100 %id)
CN352238 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 130 to 850 1 to 724       724/724
(100 %)
6 diff
(99.2 %id)
DR000065 fetal brain .b 133 to 621 1 to 489       489/489
(100 %)
0 diff
(100 %id)
EL734031 mixed .b 174 to 806 1 to 632       632/632
(100 %)
4 diff
(99.4 %id)
TI_1948207614   .b 174 to 981 126 to 934       809/1357
(59 %)
14 diff
(99.0 %id)
TI_1948207615   .b 174 to 1067 140 to 1034       895/1333
(67 %)
20 diff
(98.5 %id)
TI_1948207861   .b 174 to 981 141 to 949       809/1381
(58 %)
17 diff
(98.8 %id)
TI_1948208129   .b 174 to 988 131 to 944       814/1266
(64 %)
17 diff
(98.7 %id)
TI_1948208130   .b 174 to 1062 139 to 1031       893/1313
(68 %)
19 diff
(98.6 %id)
TI_1948208383   .b 174 to 1286 124 to 1231       1108/1280
(86 %)
37 diff
(97.2 %id)
TI_1948208384   .b 174 to 868 127 to 825       699/1326
(52 %)
37 diff
(97.3 %id)
BP231055 brain .b 206 to 789 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
FN166857 breast carcinoma .b 322 to 427 107 to 1     Submitted on the opposite strand 107/107
(100 %)
1 diff
(99.1 %id)
BG960828 colon .b 411 to 740 338 to 9       330/338
(97 %)
5 diff
(98.6 %id)
BP314039 mammary gland .b 523 to 1104 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA810299 brain .b 606 to 1164 2 to 562   capped   559/561
(99 %)
5 diff
(99.2 %id)
BE887202 leiomyosarcoma, uterus .b 633 to 1232 1 to 602       602/976
(61 %)
7 diff
(99.3 %id)
CD629860   .b 710 to 1323 1 to 614       614/614
(100 %)
6 diff
(99.1 %id)
CD629861   .b 717 to 1322 607 to 1       607/614
(98 %)
3 diff
(99.6 %id)
AA732291 germinal center B cell .b 786 to 1202 420 to 4       417/423
(98 %)
3 diff
(99.3 %id)
BP221350 colon .b 859 to 1376 1 to 520       520/570
(91 %)
29 diff
(95.0 %id)
CN352239 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1014 to 1388 1 to 376       376/376
(100 %)
4 diff
(99.0 %id)
DA332680 hippocampus .b 1134 to 1727 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
BP234707 coronary artery .b 1139 to 1719 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BU169754 embryonal carcinoma, cell line, testis .b 1149 to 2004 1 to 855       855/855
(100 %)
7 diff
(99.2 %id)
BP234611 coronary artery .b 1151 to 1736 1 to 587       587/587
(100 %)
3 diff
(99.5 %id)
DA392168 thalamus .b 1159 to 1755 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
CD629862   .b 1190 to 1327 1 to 138       138/138
(100 %)
5 diff
(96.4 %id)
CD629863   .b 1197 to 1325 130 to 1       130/137
(94 %)
2 diff
(98.6 %id)
CV348282 placenta_normal .b 1218 to 1454 286 to 45     Submitted on the opposite strand 242/294
(82 %)
23 diff
(92.2 %id)
DA721365   .b 1220 to 1785 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
BQ946056 leiomyosarcoma, uterus .b 1401 to 2255 1 to 855       855/925
(92 %)
12 diff
(98.8 %id)
AA135285 colon, tumor .b 1407 to 1656 1 to 253       253/293
(86 %)
4 diff
(98.7 %id)
DB076218 testis .b 1493 to 2025 2 to 535   capped   534/534
(100 %)
2 diff
(99.7 %id)
DA816192   .b 1627 to 2197 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB363070   .b 1739 to 2280 542 to 1       542/565
(95 %)
13 diff
(97.7 %id)
DA513273 brain .b 1740 to 2308 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BQ102459 Islets of Langerhans, Pancreas .b 1821 to 2255 1 to 435       435/444
(97 %)
1 diff
(99.8 %id)
CK822826 Islets of Langerhans, Pancreas .b 1843 to 2438 22 to 617       596/617
(96 %)
10 diff
(98.4 %id)
BG388502 embryonal carcinoma, cell line, testis .b 1854 to 2567 1 to 716       716/978
(73 %)
20 diff
(98.0 %id)
AK023990   .b 2116 to 3624 1 to 1509   available from FLJ,   1509/1509
(100 %)
1 diff
(100.0 %id)
AU142678   .b 2118 to 3018 3 to 902   capped   900/901
(99 %)
11 diff
(98.8 %id)
TI_1948208386   .b 2160 to 3259 1216 to 127       1090/1314
(82 %)
29 diff
(97.8 %id)
BP383298 ilea mucosa .b 2197 to 2918 1 to 724       722/771
(93 %)
8 diff
(99.0 %id)
N48526 multiple sclerosis lesions .b 2350 to 2762 1 to 421       421/529
(79 %)
14 diff
(97.4 %id)
TI_1948207616   .b 2350 to 3259 1029 to 125       905/1244
(72 %)
11 diff
(99.2 %id)
TI_1948208131   .b 2407 to 3261 977 to 119       858/1294
(66 %)
107 diff
(91.8 %id)
AA305711 colon .b 2468 to 2921 1 to 453       453/461
(98 %)
11 diff
(97.7 %id)
TI_1948207862   .b 2469 to 3259 916 to 124       793/1320
(60 %)
10 diff
(99.3 %id)
FN057406 breast carcinoma .b 2503 to 2598 99 to 2     Submitted on the opposite strand 98/99
(98 %)
0 diff
(100 %id)
FN063291 breast carcinoma .b 2503 to 2599 97 to 1     Submitted on the opposite strand 97/97
(100 %)
0 diff
(100 %id)
CN352240 embryonic stem cells, cell lines H1, H7, andH9 .b 2568 to 3190 1 to 623       623/623
(100 %)
0 diff
(100 %id)
TI_1948207617   .b 2586 to 3259 812 to 138       675/1413
(47 %)
14 diff
(99.1 %id)
DA648528   .b 2593 to 3122 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
BE888778 leiomyosarcoma, uterus .b 2605 to 3336 1 to 734       734/736
(99 %)
21 diff
(97.2 %id)
CN299025 embryonic stem cells, DMSO-treated H9 cellline .b 2649 to 3368 1 to 720       720/720
(100 %)
0 diff
(100 %id)
AU310680 neuroblastoma .b 2651 to 3229 1 to 579       579/579
(100 %)
0 diff
(100 %id)
BP292534 lung .b 2675 to 3224 1 to 550       550/550
(100 %)
5 diff
(99.1 %id)
DA347175 substantia nigra .b 2682 to 3232 2 to 553   capped   552/553
(99 %)
2 diff
(99.7 %id)
CV572459 cornea, eye .b 2813 to 3448 1 to 636       636/636
(100 %)
0 diff
(100 %id)
AA329942   .b 2857 to 3201 1 to 349       349/412
(84 %)
5 diff
(98.8 %id)
BP243964 Liver .b 2899 to 3390 1 to 489       489/565
(86 %)
17 diff
(97.0 %id)
DA753621   .b 3017 to 3562 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
N39412 multiple sclerosis lesions .b 3018 to 3449 432 to 1       432/432
(100 %)
0 diff
(100 %id)
W79219 heart .b 3077 to 3501 1 to 427       427/427
(100 %)
2 diff
(99.6 %id)
BE769191 prostate_tumor .b 3088 to 3318 1 to 234       234/234
(100 %)
11 diff
(95.3 %id)
BE813567 breast_normal .b 3090 to 3578 52 to 543       492/546
(90 %)
12 diff
(97.9 %id)
BE769147 prostate_tumor .b 3094 to 3389 2 to 299       298/303
(98 %)
20 diff
(93.4 %id)
AA983684 pooled .b 3114 to 3620 513 to 4       510/515
(99 %)
12 diff
(97.7 %id)
BE813581 breast_normal .b 3127 to 3629 504 to 1       504/505
(99 %)
12 diff
(97.7 %id)
BF797774 lymph, lymphoma, cell line .b 3129 to 3924 1 to 792       792/957
(82 %)
37 diff
(96.2 %id)
AA083583   .b 3175 to 3607 1 to 434       434/434
(100 %)
2 diff
(99.6 %id)
FN080205 breast carcinoma .b 3181 to 3276 96 to 1     Submitted on the opposite strand 96/96
(100 %)
0 diff
(100 %id)
DB512263 testis .b 3183 to 3624 1 to 442     Submitted on the opposite strand 442/442
(100 %)
2 diff
(99.6 %id)
AU159932   .b 3184 to 3624 441 to 1       441/445
(99 %)
0 diff
(100 %id)
CU445332 epidermis .b 3195 to 3597 426 to 23     Submitted on the opposite strand 404/429
(94 %)
0 diff
(100 %id)
BI224446 cervical carcinoma cell line, cervix .b 3198 to 3987 1 to 787       787/787
(100 %)
11 diff
(98.7 %id)
AW888767 nervous_tumor .b 3208 to 3776 1 to 565       565/572
(98 %)
27 diff
(95.3 %id)
AA164365   .b 3209 to 3707 1 to 500       500/500
(100 %)
3 diff
(99.4 %id)
AW888758 nervous_tumor .b 3211 to 3642 1 to 436       436/438
(99 %)
29 diff
(93.4 %id)
CN299024 embryonic stem cells, DMSO-treated H9 cellline .b 3220 to 3468 1 to 249       249/249
(100 %)
1 diff
(99.6 %id)
BF541495 hypernephroma, Kidney .b 3264 to 3923 1 to 647       647/863
(74 %)
16 diff
(98.2 %id)
BF681618 Prostate .b 3264 to 3893 1 to 620       620/802
(77 %)
12 diff
(98.6 %id)
BP258335 heart .b 3272 to 3831 1 to 561       561/561
(100 %)
4 diff
(99.3 %id)
BM728033 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3272 to 4014 1 to 741       741/741
(100 %)
2 diff
(99.8 %id)
CX870060 embryonic stem .b 3311 to 3937 1 to 627       627/627
(100 %)
3 diff
(99.6 %id)
CB158983 Liver .b 3348 to 3877 1 to 530       530/530
(100 %)
1 diff
(99.9 %id)
BF933502 nervous_tumor .b 3390 to 3803 429 to 15     Submitted on the opposite strand 415/429
(96 %)
0 diff
(100 %id)
AA327771   .b 3393 to 3752 1 to 363       363/363
(100 %)
9 diff
(97.6 %id)
AW961282   .b 3409 to 4000 1 to 590       590/590
(100 %)
6 diff
(99.0 %id)
AA278220 germinal center B cell .b 3416 to 3908 11 to 503       493/503
(98 %)
6 diff
(98.9 %id)
F07071 brain, total brain .b 3485 to 3773 1 to 289       289/289
(100 %)
1 diff
(99.7 %id)
F07147 brain, total brain .b 3485 to 3834 1 to 350       350/350
(100 %)
2 diff
(99.5 %id)
R18325 whole brain .b 3486 to 3883 1 to 412       412/413
(99 %)
20 diff
(95.2 %id)
R60450 whole brain .b 3486 to 3913 1 to 439       439/439
(100 %)
14 diff
(96.9 %id)
BE929206 placenta_normal .b 3513 to 3810 301 to 6       296/311
(95 %)
0 diff
(100 %id)
BF208172 bladder, carcinoma, cell line .b 3518 to 4220 1 to 691       691/878
(78 %)
31 diff
(96.5 %id)
BU569958 testis .b 3529 to 4304 1 to 777       777/777
(100 %)
4 diff
(99.5 %id)
BG527736 lung, mucoepidermoid carcinoma .b 3532 to 4271 1 to 740       740/745
(99 %)
5 diff
(99.4 %id)
AA449150   .b 3594 to 3917 1 to 324       324/324
(100 %)
0 diff
(100 %id)
FN110704 breast carcinoma .b 3629 to 3729 101 to 1     Submitted on the opposite strand 101/101
(100 %)
0 diff
(100 %id)
BG006027 placenta_normal .b 3644 to 4220 1 to 577       577/577
(100 %)
13 diff
(97.8 %id)
BF693695 muscle (skeletal) .b 3659 to 4271 1 to 617       617/778
(79 %)
11 diff
(98.6 %id)
BM831900 stomach .b 3690 to 4224 1 to 534       534/534
(100 %)
2 diff
(99.7 %id)
TI_154113283   .b 3705 to 4544 915 to 84   AAA   832/934
(89 %)
14 diff
(98.6 %id)
AA172128   .b 3784 to 4138 1 to 363       363/364
(99 %)
9 diff
(97.6 %id)
T91627 lung .b 3830 to 4101 1 to 275       275/354
(77 %)
4 diff
(98.9 %id)
CA448766 Chondrosarcoma, Left Pelvis .b 3880 to 4544 683 to 19   AAA   665/665
(100 %)
1 diff
(99.9 %id)
N84907   .b 3931 to 4223 1 to 293       293/293
(100 %)
3 diff
(99.0 %id)
TI_158432835   .b 3938 to 4544 704 to 94   AAA   611/945
(64 %)
22 diff
(97.7 %id)
AI807204 pooled .b 3974 to 4547 574 to 1       574/574
(100 %)
0 diff
(100 %id)
AU310681 neuroblastoma .b 3989 to 4545 557 to 1       557/557
(100 %)
1 diff
(99.9 %id)
AA135148 colon, tumor .b 4003 to 4424 422 to 1       422/422
(100 %)
1 diff
(99.8 %id)
AI696986 adenocarcinoma, Pancreas .b 4003 to 4425 423 to 1       423/423
(100 %)
1 diff
(99.8 %id)
EH341652   .b 4004 to 4079 1 to 76       76/76
(100 %)
0 diff
(100 %id)
BX092533 whole brain .b 4011 to 4544 548 to 15   AAA   534/534
(100 %)
0 diff
(100 %id)
AI097098   .b 4030 to 4547 520 to 3       518/520
(99 %)
0 diff
(100 %id)
AI425071 pooled .b 4036 to 4545 510 to 1       510/510
(100 %)
0 diff
(100 %id)
BQ435291 leiomyosarcoma, uterus .b 4055 to 4889 1 to 837       837/842
(99 %)
9 diff
(99.0 %id)
AI632253 pooled germ cell tumors .b 4059 to 4546 488 to 1       488/488
(100 %)
0 diff
(100 %id)
AA379150 skin .b 4062 to 4357 1 to 296       296/296
(100 %)
3 diff
(99.0 %id)
AA379822 skin .b 4062 to 4334 1 to 273       273/273
(100 %)
3 diff
(99.0 %id)
AI016295   .b 4070 to 4547 479 to 2       478/479
(99 %)
0 diff
(100 %id)
CF528663 placenta .b 4071 to 4544 491 to 18   AAA   474/474
(100 %)
3 diff
(99.4 %id)
W74507 heart .b 4078 to 4545 477 to 1       477/478
(99 %)
14 diff
(97.1 %id)
CK003064 brain/CNS, Human Brain - Cerebellar Cortex .b 4078 to 4734 1 to 657       657/659
(99 %)
5 diff
(99.3 %id)
AI274849 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 4087 to 4545 458 to 1       458/458
(100 %)
3 diff
(99.4 %id)
AW888743 nervous_tumor .b 4090 to 4498 406 to 1       406/406
(100 %)
11 diff
(97.3 %id)
AA164254   .b 4100 to 4544 445 to 1       445/445
(100 %)
5 diff
(98.9 %id)
AA873406 Kidney .b 4101 to 4547 447 to 1       447/447
(100 %)
1 diff
(99.8 %id)
AA994937 breast .b 4103 to 4543 441 to 1       441/441
(100 %)
1 diff
(99.8 %id)
AA978276 pooled .b 4123 to 4544 422 to 1       422/422
(100 %)
0 diff
(100 %id)
H28798 whole brain .b 4129 to 4547 436 to 7       430/471
(91 %)
0 diff
(100 %id)
R60216 whole brain .b 4141 to 4547 426 to 7       420/430
(97 %)
0 diff
(100 %id)
BG290610 bladder, transitional cell papilloma, cell line .b 4143 to 4859 1 to 716       716/730
(98 %)
16 diff
(97.9 %id)
AW151241 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 4159 to 4520 362 to 1       362/362
(100 %)
4 diff
(98.9 %id)
N30799.
matches multiple genes
placenta .b 4172 to 4544 374 to 1     also hits gene MED31 374/374
(100 %)
2 diff
(99.5 %id)
R42371 whole brain .b 4173 to 4544 402 to 11   AAA   392/399
(98 %)
22 diff
(94.5 %id)
FN054042 breast carcinoma .b 4206 to 4313 1 to 108       108/108
(100 %)
1 diff
(99.1 %id)
BQ574749 Chondrosarcoma Grade II, Left Pelvis .b 4215 to 5016 820 to 19   AAA   802/802
(100 %)
0 diff
(100 %id)
DB512214 testis .b 4227 to 4544 1 to 319     Submitted on the opposite strand 319/319
(100 %)
7 diff
(97.9 %id)
CN352237 embryonic stem cells, DMSO-treated H9 cellline .b 4253 to 4997 9 to 753       745/753
(98 %)
6 diff
(99.3 %id)
BM765114 Ascites, stomach .b 4265 to 4795 1 to 531       531/531
(100 %)
0 diff
(100 %id)
AA651881 germinal center B cell .b 4270 to 4544 286 to 12   AAA   275/275
(100 %)
12 diff
(95.7 %id)
F03435 brain, total brain .b 4272 to 4544 273 to 1       273/273
(100 %)
0 diff
(100 %id)
FN161836 breast carcinoma .b 4309 to 4414 111 to 5     Submitted on the opposite strand 107/111
(96 %)
0 diff
(100 %id)
BE612369 adenocarcinoma, ovary .b 4311 to 5013 1 to 713       713/713
(100 %)
14 diff
(98.1 %id)
BM992204 Bone, Subchondral Bone .b 4343 to 5016 692 to 19   AAA   674/674
(100 %)
1 diff
(99.9 %id)
CB143980 Liver .b 4359 to 4867 8 to 516       509/516
(98 %)
6 diff
(98.9 %id)
AI139863   .b 4365 to 4544 202 to 23   AAA   180/181
(99 %)
0 diff
(100 %id)
CA312706 Human Lung Epithelial cells, lung .b 4397 to 5014 636 to 19   AAA   618/621
(99 %)
4 diff
(99.4 %id)
AA278665.
matches multiple genes
germinal center B cell .b 4405 to 4525 146 to 26     Submitted on the opposite strand, also hits gene KDM5C 121/147
(82 %)
0 diff
(100 %id)
BF030517 hypernephroma, Kidney .b 4409 to 5016 1 to 602   AAA   602/602
(100 %)
13 diff
(97.9 %id)
BE672006 pooled germ cell tumors .b 4429 to 5016 588 to 1       588/588
(100 %)
0 diff
(100 %id)
FN134045 breast carcinoma .b 4440 to 4511 1 to 73       73/74
(98 %)
2 diff
(97.3 %id)
BU954566 mixed (pool of 40 RNAs) .b 4462 to 5018 1 to 558       558/851
(65 %)
10 diff
(98.9 %id)
AI377189 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 4501 to 5014 514 to 1       514/514
(100 %)
0 diff
(100 %id)
AA083465   .b 4503 to 5018 522 to 1       522/522
(100 %)
15 diff
(97.2 %id)
AW166783 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 4508 to 5016 509 to 1       509/509
(100 %)
0 diff
(100 %id)
AA195076 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 4510 to 5018 513 to 5       509/520
(97 %)
0 diff
(100 %id)
AI814597 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .b 4517 to 4971 1 to 455     Submitted on the opposite strand 455/455
(100 %)
1 diff
(99.8 %id)
AA976814 pooled germ cell tumors .b 4533 to 5016 484 to 1       484/484
(100 %)
2 diff
(99.6 %id)
AW072791 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .b 4533 to 5016 484 to 1       484/484
(100 %)
2 diff
(99.6 %id)
AI969039 pooled germ cell tumors .b 4541 to 5016 470 to 1       470/473
(99 %)
9 diff
(98.1 %id)
AI125921 uterus .b 4542 to 5018 481 to 5       477/481
(99 %)
0 diff
(100 %id)
BE326414 carcinoid, lung .b 4547 to 5015 469 to 1       469/469
(100 %)
0 diff
(100 %id)
AI871824 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 4585 to 5016 432 to 1       432/432
(100 %)
0 diff
(100 %id)
T16446   .b 4589 to 5016 429 to 1       429/430
(99 %)
3 diff
(99.4 %id)
AI469391 colon, moderately-differentiated adenocarcinoma .b 4593 to 5017 425 to 1       425/425
(100 %)
1 diff
(99.8 %id)
N68029 cochlea, ear .b 4595 to 5018 438 to 6       433/461
(93 %)
0 diff
(100 %id)
AA446100   .b 4605 to 5018 419 to 6   tiling clone,   414/419
(98 %)
0 diff
(100 %id)
CN352236 embryonic stem cells, DMSO-treated H9 cellline .b 4612 to 5010 59 to 457       399/457
(87 %)
6 diff
(98.7 %id)
AI915590 pooled .b 4619 to 5018 403 to 4       400/403
(99 %)
0 diff
(100 %id)
AA931315 pooled .b 4632 to 5016 385 to 1       385/385
(100 %)
5 diff
(98.8 %id)
AA476622   .b 4633 to 5018 390 to 5       386/390
(98 %)
0 diff
(100 %id)
AW072616 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .b 4642 to 5017 376 to 1       376/376
(100 %)
0 diff
(100 %id)
T30013 adipose .b 4647 to 5016 372 to 1       372/373
(99 %)
3 diff
(99.2 %id)
AA766213 germinal center B cell .b 4648 to 5018 378 to 8       371/378
(98 %)
0 diff
(100 %id)
AW662670 colon, moderately-differentiated adenocarcinoma .b 4649 to 5016 368 to 1       368/368
(100 %)
0 diff
(100 %id)
T91579 lung .b 4653 to 4987 346 to 1       346/419
(82 %)
13 diff
(96.9 %id)
N68019 cochlea, ear .b 4660 to 5018 364 to 6       359/364
(98 %)
0 diff
(100 %id)
AA718973 pineal gland .b 4664 to 5018 360 to 6       355/360
(98 %)
0 diff
(100 %id)
AW140062   .b 4713 to 5016 319 to 16   AAA   304/304
(100 %)
0 diff
(100 %id)
AI700155 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 4716 to 5018 305 to 3       303/305
(99 %)
0 diff
(100 %id)
AI569296 adenocarcinoma, Pancreas .b 4741 to 5016 286 to 11   AAA   276/276
(100 %)
3 diff
(99.0 %id)
FN095059 breast carcinoma .b 4951 to 5015 1 to 65       65/67
(97 %)
1 diff
(98.6 %id)
NM_020159.3   .c 1 to 5092 1 to 5092 exact RefSeq, AAA   5092/5092
(100 %)
0 diff
(100 %id)
AY008271   .c 178 to 5092 1 to 4919 V301A tiling clone, AAA   4919/4919
(100 %)
16 diff
(99.7 %id)
AK025302 colon .c 941 to 4620 1 to 3680   available from FLJ, AAA   3680/3680
(100 %)
10 diff
(99.8 %id)
AL359929 melanoma (MeWo cell line) .c 1551 to 4621 1 to 3069   tiling clone, available from DKFZ, AAA   3069/3069
(100 %)
3 diff
(100.0 %id)
BI093431 cervix .c 1895 to 2674 1 to 785       785/788
(99 %)
15 diff
(98.1 %id)
DA735657   .c 2049 to 2861 2 to 813   capped   812/815
(99 %)
9 diff
(98.9 %id)
AL512768 testis .c 2209 to 4620 1 to 2412   tiling clone, available from DKFZ, AAA   2412/2412
(100 %)
0 diff
(100 %id)
DB367969   .c 3963 to 4501 547 to 1       547/548
(99 %)
18 diff
(96.8 %id)
BI464709 testis .d 1 to 628 1 to 629   tiling clone, available from MGC,   629/629
(100 %)
15 diff
(97.7 %id)
BC041800 testis .d 5 to 3781 1 to 3777 exact tiling clone, available from MGC, AAA   3777/3777
(100 %)
0 diff
(100 %id)
DB447299 testis .d 7 to 428 1 to 422       422/422
(100 %)
2 diff
(99.6 %id)
AK301668 esophagus, tumor tissue .e 1 to 2348 1 to 2348 exact tiling clone,   2348/2348
(100 %)
2 diff
(100.0 %id)
DC394123 esophageal, tumor tissue .e 1 to 571 1 to 572       572/576
(99 %)
2 diff
(99.7 %id)
DC347865 tongue, tumor tissue .e 16 to 578 1 to 563       563/568
(99 %)
2 diff
(99.7 %id)
DC347894 tongue, tumor tissue .e 16 to 602 1 to 587       587/587
(100 %)
2 diff
(99.7 %id)
DC348108 tongue, tumor tissue .e 18 to 573 1 to 559       559/559
(100 %)
3 diff
(99.5 %id)
DC347973 tongue, tumor tissue .e 64 to 630 1 to 567       567/567
(100 %)
1 diff
(99.9 %id)
BP230170 brain .f 1 to 579 2 to 579 exact tiling clone,   579/583
(99 %)
2 diff
(99.7 %id)
DA097583 cerebellum .f 21 to 585 2 to 567 exact tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
DA114040 cerebellum .g 1 to 553 2 to 554 D23X tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
BM926820 brain .h 1 to 590 6 to 595 exact tiling clone,   595/1033
(57 %)
2 diff
(99.9 %id)
BF943320 nervous_normal .i 1 to 318 8 to 325   tiling clone,   318/325
(97 %)
6 diff
(98.2 %id)
AL600636   .i 137 to 580 1 to 444 N36X tiling clone,   444/444
(100 %)
1 diff
(99.8 %id)
BG430825 Kidney .j-u 1 to 558 1 to 573 N4K L5F K7E D8R K9* tiling clone,   573/760
(75 %)
48 diff
(93.7 %id)
DA344015 substantia nigra .j-u 133 to 658 2 to 527   tiling clone, capped   526/526
(100 %)
1 diff
(99.9 %id)
AI053942 ovary, papillary serous carcinoma .j-u 373 to 603 1 to 231     Submitted on the opposite strand 231/231
(100 %)
6 diff
(97.5 %id)
AI792551 ovary, papillary serous carcinoma .j-u 373 to 727 43 to 398       356/400
(89 %)
3 diff
(99.3 %id)
AI345489 invasive adenocarcinoma, lung .j-u 373 to 730 382 to 24       359/403
(89 %)
0 diff
(100 %id)
BM874086   .j-u 382 to 830 1 to 449   tiling clone, Submitted on the opposite strand 449/449
(100 %)
3 diff
(99.4 %id)
BX101826 invasive adenocarcinoma, lung .j-u 400 to 730 349 to 19     Submitted on the opposite strand 331/349
(94 %)
0 diff
(100 %id)
FN108742 breast carcinoma .j-u 474 to 560 11 to 95       85/96
(88 %)
3 diff
(96.9 %id)
BX112192 whole brain .j-u 759 to 1286 1 to 527   tiling clone,   527/527
(100 %)
4 diff
(99.3 %id)
H08299 whole brain .j-u 759 to 1253 1 to 500       500/500
(100 %)
17 diff
(96.6 %id)
H18742 whole brain .j-u 759 to 1149 1 to 390       390/390
(100 %)
7 diff
(98.3 %id)
FN112107 breast carcinoma .j-u 1092 to 1182 90 to 1     Submitted on the opposite strand 90/92
(97 %)
1 diff
(99.0 %id)
FN110860 breast carcinoma .j-u 1169 to 1241 1 to 70       70/71
(98 %)
3 diff
(95.8 %id)
DB310192 substantia nigra .j-u 1720 to 2231 512 to 1   tiling clone,   512/513
(99 %)
3 diff
(99.5 %id)
H08201 whole brain .j-u 1865 to 2239 388 to 1   tiling clone,   388/391
(99 %)
14 diff
(96.5 %id)
H18655 whole brain .j-u 1880 to 2240 374 to 1       374/387
(96 %)
16 diff
(95.9 %id)
AA719813 pineal gland .j-u 2030 to 2266 237 to 1   tiling clone,   237/237
(100 %)
0 diff
(100 %id)
DB278558 uterus .k-u 1 to 567 2 to 569 exact tiling clone, capped   568/568
(100 %)
2 diff
(99.7 %id)
BF990102 placenta_normal .l-u 1 to 378 17 to 393 exact tiling clone,   377/402
(93 %)
6 diff
(98.6 %id)
BF369518 placenta_normal .l-u 151 to 379 232 to 5 exact tiling clone,   228/232
(98 %)
0 diff
(100 %id)
AV653487 corresponding non cancerous liver tissue Gene SMARCAD1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV653503 corresponding non cancerous liver tissue Gene SMARCAD1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
DA461325 tongue, tumor tissue Gene SMARCAD1, variant not shown       capped Suspected internal deletion, this clone was ignored    
BP312736 mammary gland Gene SMARCAD1, variant not shown         This clone was ignored    
AL703974 human skeletal muscle Gene SMARCAD1, variant not shown              
BF380753 uterus_tumor Gene SMARCAD1, variant not shown         This clone was ignored    
DB287128 uterus Gene SMARCAD1, variant not shown       capped This clone was ignored    
DB352839 uterus Gene SMARCAD1, variant not shown         This clone was ignored    
DB304643 brain Gene SMARCAD1, variant not shown              
DA214707 brain Gene SMARCAD1, variant not shown       capped      
R14081 whole brain Gene SMARCAD1, variant not shown              
R40209 whole brain Gene SMARCAD1, variant not shown       AAA      
R13464 whole brain Gene SMARCAD1, variant not shown              
R37374 whole brain Gene SMARCAD1, variant not shown       AAA      
R59694 whole brain Gene SMARCAD1, variant not shown       AAA      
R59804 whole brain Gene SMARCAD1, variant not shown              
AI655865 pooled germ cell tumors Gene SMARCAD1, variant not shown              
BF574558 muscle (skeletal) Gene SMARCAD1, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k-u, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C