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Gene SMAD9TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
145 supporting clones for gene SMAD9 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CN291481 embryonic stem cells, DMSO-treated H9 cellline .a 1 to 236 1 to 230   tiling clone,   230/230
(100 %)
7 diff
(97.0 %id)
NM_001127217.2   .a 7 to 5598 1 to 5592 exact RefSeq,   5592/5592
(100 %)
0 diff
(100 %id)
BI458322 brain, hypothalamus .a 36 to 821 1 to 782   tiling clone,   782/782
(100 %)
13 diff
(98.4 %id)
BI597330 brain, hypothalamus .a 36 to 806 1 to 768       768/768
(100 %)
17 diff
(97.8 %id)
BI668206 brain, hypothalamus .a 36 to 844 1 to 815   available from MGC,   815/815
(100 %)
44 diff
(94.7 %id)
DB501041 hypothalamus .a 41 to 530 1 to 484       484/484
(100 %)
2 diff
(99.6 %id)
TI_45216104   .a 41 to 806 127 to 889       763/889
(85 %)
9 diff
(99.0 %id)
TI_44346348   .a 41 to 844 90 to 899       810/899
(90 %)
37 diff
(95.9 %id)
DA756136   .a 159 to 535 214 to 590   capped   377/589
(64 %)
8 diff
(98.7 %id)
BG329736 eye, retinoblastoma .a 209 to 956 1 to 733       733/921
(79 %)
28 diff
(97.0 %id)
DR000365 fetal brain .a 224 to 839 1 to 615       615/615
(100 %)
1 diff
(99.9 %id)
TI_1241111831   .a 253 to 1354 49 to 1142       1094/1244
(87 %)
20 diff
(98.4 %id)
TI_1241111835   .a 253 to 1388 48 to 1173     Submitted on the opposite strand 1122/1267
(88 %)
24 diff
(98.2 %id)
TI_2194576386   .a 253 to 1405 61 to 1204     Submitted on the opposite strand 1144/1243
(92 %)
38 diff
(97.0 %id)
TI_2194578963   .a 253 to 1354 63 to 1155     Submitted on the opposite strand 1093/1268
(86 %)
22 diff
(98.3 %id)
BC104760 Brain, cerebral cortex, PCR rescued clones .a 255 to 1808 1 to 1554 exact     1554/1554
(100 %)
2 diff
(99.9 %id)
BC104762 Brain, cerebral cortex, PCR rescued clones .a 255 to 1808 1 to 1554 exact     1554/1554
(100 %)
1 diff
(100.0 %id)
BC143240 Brain, cerebral cortex, PCR rescued clones .a 255 to 1808 1 to 1554 exact     1554/1554
(100 %)
2 diff
(99.9 %id)
D83760 placenta .a 295 to 1785 1 to 1491 exact tiling clone,   1491/1491
(100 %)
0 diff
(100 %id)
AK314920 hippocampus .a 298 to 1753 1 to 1456 exact     1456/1456
(100 %)
0 diff
(100 %id)
DA293222 hippocampus .a 299 to 870 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
TI_1241111143   .a 325 to 1498 1160 to 1       1160/1239
(93 %)
29 diff
(97.7 %id)
CV028571 mixed .a 350 to 1006 1 to 657       657/660
(99 %)
1 diff
(99.9 %id)
TI_1948128081   .a 350 to 990 134 to 785       652/1183
(55 %)
38 diff
(96.8 %id)
TI_1948128758   .a 350 to 978 133 to 768       636/1157
(54 %)
27 diff
(97.7 %id)
TI_1948129088   .a 350 to 1011 130 to 791       662/1146
(57 %)
13 diff
(98.9 %id)
TI_1948129089   .a 350 to 983 131 to 773       643/1235
(52 %)
23 diff
(98.2 %id)
TI_1948128415   .a 352 to 1019 139 to 809       671/1114
(60 %)
17 diff
(98.5 %id)
TI_1241111117   .a 385 to 1493 1116 to 8       1109/1248
(88 %)
12 diff
(99.1 %id)
BE252922 eye, retinoblastoma .a 440 to 1003 1 to 564       564/564
(100 %)
0 diff
(100 %id)
CK902847 Pancreas, Purified pancreatic islet .a 563 to 1002 1 to 446     Submitted on the opposite strand 446/456
(97 %)
11 diff
(97.6 %id)
TI_1241109361   .a 581 to 1696 8 to 1115       1107/1192
(92 %)
23 diff
(98.1 %id)
TI_2194578961   .a 734 to 1810 1132 to 58     Submitted on the opposite strand 1075/1271
(84 %)
7 diff
(99.5 %id)
BX506816 Liver .a 825 to 1505 1 to 681       681/683
(99 %)
2 diff
(99.8 %id)
TI_2194577756   .a 878 to 1810 10 to 941       932/1172
(79 %)
11 diff
(99.1 %id)
TI_2194576003   .a 885 to 1810 977 to 56     Submitted on the opposite strand 922/1238
(74 %)
20 diff
(98.4 %id)
AA374625 lung .a 961 to 1192 1 to 232       232/233
(99 %)
3 diff
(98.8 %id)
AK311686 trachea .a 972 to 1932 1 to 961       961/961
(100 %)
1 diff
(99.9 %id)
DB197223 trachea .a 973 to 1544 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
TI_1948128432   .a 1123 to 1753 756 to 124       633/1393
(45 %)
12 diff
(99.2 %id)
TI_2194577753   .a 1350 to 1810 1 to 460       460/1111
(41 %)
6 diff
(99.5 %id)
CA777985 Pancreas, Purified pancreatic islet .a 1406 to 2228 823 to 1       823/823
(100 %)
2 diff
(99.8 %id)
TI_149298593   .a 1416 to 2062 734 to 94   AAA   641/777
(82 %)
8 diff
(99.0 %id)
AV750843 Pituitary .a 1433 to 1751 1 to 315       315/327
(96 %)
4 diff
(98.8 %id)
BU684716 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1574 to 2062 507 to 19   AAA   489/489
(100 %)
2 diff
(99.6 %id)
AI869666 anaplastic oligodendroglioma, brain .a 1608 to 2200 596 to 1       596/606
(98 %)
16 diff
(97.4 %id)
AI652112 pooled germ cell tumors .a 1613 to 2353 749 to 9   tiling clone,   741/752
(98 %)
0 diff
(100 %id)
BX117187 heart .a 1713 to 2202 1 to 490       490/490
(100 %)
0 diff
(100 %id)
DA794944 brain .a 1745 to 2302 2 to 558   capped   557/557
(100 %)
4 diff
(99.3 %id)
AI682538 Prostate .a 1760 to 2227 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
DA266907 caudate nucleus .a 1822 to 2332 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
DB572220 hypothalamus .a 1877 to 2359 1 to 484     Submitted on the opposite strand 484/484
(100 %)
1 diff
(99.8 %id)
AI090812 heart .a 1893 to 2364 474 to 2       473/474
(99 %)
0 diff
(100 %id)
AW594637 pooled germ cell tumors .a 1905 to 2351 448 to 1       448/448
(100 %)
1 diff
(99.8 %id)
W86060.
matches multiple genes
liver and spleen .a 1945 to 2360 422 to 1   tiling clone, also hits gene AKR1E2andAKR1C1andAKR1C3 422/423
(99 %)
6 diff
(98.6 %id)
AW191604 Pancreas, pancreatic islets .a 2030 to 2371 343 to 1       343/345
(99 %)
3 diff
(99.2 %id)
BX507781   .a 2257 to 2885 1 to 629   tiling clone,   629/629
(100 %)
2 diff
(99.7 %id)
BF740389 bocio_tumor .a 2393 to 2581 1 to 188       188/234
(80 %)
10 diff
(95.8 %id)
AA344526 gall bladder .a 2445 to 2705 1 to 260   tiling clone,   260/260
(100 %)
6 diff
(97.7 %id)
BF977828 melanotic melanoma, high MDR, skin .a 2667 to 3342 1 to 674       674/695
(96 %)
17 diff
(97.6 %id)
BM461648 eye, retinoblastoma .a 2822 to 3668 1 to 860   tiling clone,   860/1002
(85 %)
21 diff
(98.0 %id)
BF699231 brain, primitive neuroectoderm .a 2939 to 3627 1 to 677       677/883
(76 %)
20 diff
(97.8 %id)
DA154149 amygdala .a 3122 to 3654 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
EB361526 eye, lens .a 3126 to 3719 593 to 1       593/593
(100 %)
2 diff
(99.7 %id)
DB272250 uterus .a 3132 to 3686 2 to 558   tiling clone, capped   557/557
(100 %)
4 diff
(99.3 %id)
BF000962 breast, lobullar carcinoma in situ .a 3208 to 3516 329 to 21       309/336
(91 %)
0 diff
(100 %id)
AA489580   .a 3247 to 3475 1 to 230       230/243
(94 %)
2 diff
(99.2 %id)
BM739626 stomach .a 3420 to 3933 1 to 513       513/513
(100 %)
3 diff
(99.5 %id)
BM738576 stomach .a 3420 to 3992 1 to 570       570/570
(100 %)
2 diff
(99.7 %id)
BM739654 stomach .a 3420 to 4100 1 to 678       678/678
(100 %)
3 diff
(99.6 %id)
BM747886 stomach .a 3420 to 3931 1 to 511       511/511
(100 %)
2 diff
(99.7 %id)
BU102189   .a 3506 to 3953 1 to 450   tiling clone,   450/451
(99 %)
5 diff
(98.9 %id)
CA397264 eye, RPE/choroid .a 3526 to 3938 12 to 423       412/423
(97 %)
6 diff
(98.6 %id)
DB306873 caudate nucleus .a 3752 to 4289 539 to 1       539/539
(100 %)
4 diff
(99.3 %id)
BM564512 duodenal adenocarcinoma, cell line, small intestine .a 3879 to 4741 1 to 867   tiling clone,   867/1067
(81 %)
25 diff
(97.7 %id)
CD357167 Blood vessels - aorta, basilar and artery .a 4047 to 4288 1 to 242   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 242/242
(100 %)
4 diff
(98.4 %id)
BE618924 eye, retinoblastoma .a 4087 to 4527 9 to 450   tiling clone,   442/450
(98 %)
6 diff
(98.7 %id)
T16935   .a 4143 to 4327 1 to 186       186/186
(100 %)
8 diff
(95.7 %id)
F07534 brain, total brain .a 4144 to 4361 1 to 218       218/218
(100 %)
8 diff
(96.4 %id)
AI142572 pooled .a 4353 to 4789 437 to 1       437/437
(100 %)
0 diff
(100 %id)
BE878672 large cell carcinoma, undifferentiated, lung .a 4384 to 5083 1 to 698       698/732
(95 %)
33 diff
(95.5 %id)
AA384996 thyroid gland .a 4396 to 4645 1 to 250       250/252
(99 %)
2 diff
(99.3 %id)
BM802662 eye, retinoblastoma .a 4434 to 5488 1 to 1047       1047/1096
(95 %)
27 diff
(97.6 %id)
BQ213078 embryonal carcinoma, cell line, testis .a 4464 to 5113 1 to 648       648/1010
(64 %)
7 diff
(99.4 %id)
BX095366   .a 4467 to 5125 1 to 653       653/653
(100 %)
4 diff
(99.4 %id)
AA453333   .a 4467 to 4978 1 to 506       506/506
(100 %)
3 diff
(99.5 %id)
BG535199 lung .a 4468 to 5128 1 to 652       652/652
(100 %)
13 diff
(98.1 %id)
CD677698 eye, Trabecular meshwork .a 4470 to 5091 1 to 622   tiling clone,   622/622
(100 %)
1 diff
(99.9 %id)
BE958267 brain, primitive neuroectoderm .a 4618 to 5240 1 to 621       621/885
(70 %)
71 diff
(92.0 %id)
TI_149310565   .a 4679 to 5597 991 to 86   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 906/957
(94 %)
23 diff
(97.6 %id)
W95374 heart .a 4700 to 5016 1 to 317       317/317
(100 %)
0 diff
(100 %id)
AA315767 lung .a 4757 to 5021 1 to 261       261/268
(97 %)
7 diff
(97.4 %id)
BQ028284 mixed .a 4767 to 5234 470 to 9       462/470
(98 %)
0 diff
(100 %id)
TI_149298102   .a 4773 to 5598 915 to 94       822/1013
(81 %)
0 diff
(100 %id)
BU688850 lung .a 4830 to 5597 783 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 767/767
(100 %)
1 diff
(99.9 %id)
CA502976 Human Lung Epithelial cells, lung .a 4857 to 5597 756 to 17   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 740/740
(100 %)
1 diff
(99.9 %id)
CB957081 Pooled-Glandular .a 4896 to 5580 1 to 689       689/729
(94 %)
19 diff
(97.4 %id)
BE439820 Trabecular meshwork .a 4900 to 5323 1 to 424       424/424
(100 %)
1 diff
(99.8 %id)
DA376004 thalamus .a 4900 to 5468 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
BU684555 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 4913 to 5598 703 to 18       686/703
(97 %)
0 diff
(100 %id)
CD678716 eye, Trabecular meshwork .a 4951 to 5559 1 to 600       600/600
(100 %)
4 diff
(99.4 %id)
DB301846 amygdala .a 5050 to 5597 546 to 1       546/547
(99 %)
1 diff
(99.9 %id)
AA464846   .a 5130 to 5598 466 to 7       460/466
(98 %)
0 diff
(100 %id)
AI619431 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 5144 to 5337 194 to 1       194/194
(100 %)
0 diff
(100 %id)
AA934610 pooled germ cell tumors .a 5164 to 5598 434 to 1   tiling clone,   434/434
(100 %)
9 diff
(98.0 %id)
AA536135 invasive prostate tumor, Prostate .a 5168 to 5595 446 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 428/428
(100 %)
7 diff
(98.4 %id)
W95483 heart .a 5169 to 5597 428 to 1       428/428
(100 %)
2 diff
(99.6 %id)
AA496995   .a 5185 to 5598 410 to 5       406/410
(99 %)
0 diff
(100 %id)
AA659920 normal prostate, Prostate .a 5237 to 5597 357 to 1       357/357
(100 %)
2 diff
(99.5 %id)
Z40593 brain, total brain .a 5385 to 5597 213 to 1       213/213
(100 %)
1 diff
(99.6 %id)
AI625153 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 5433 to 5586 184 to 31   AAA   154/164
(93 %)
0 diff
(100 %id)
AA598635   .a 5444 to 5598 155 to 1       155/179
(86 %)
1 diff
(99.5 %id)
NM_005905.5   .b 1 to 5481 1 to 5481 exact RefSeq,   5481/5481
(100 %)
0 diff
(100 %id)
BC067766 Brain, hypothalamus .b 35 to 2242 1 to 2203 R73G R226* tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 2203/2203
(100 %)
6 diff
(99.8 %id)
BC011559 Eye, retinoblastoma .b 204 to 2110 1 to 1906 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 1906/1906
(100 %)
1 diff
(100.0 %id)
D83761 placenta .b 289 to 1668 1 to 1380 exact     1380/1380
(100 %)
0 diff
(100 %id)
TI_1948128080   .b 344 to 1211 134 to 1006       873/1139
(76 %)
40 diff
(96.5 %id)
TI_1948128757   .b 344 to 1120 133 to 907       775/1147
(67 %)
23 diff
(98.0 %id)
TI_1948129104   .b 344 to 1211 133 to 991       859/1182
(72 %)
31 diff
(97.4 %id)
TI_1948129105   .b 344 to 1043 126 to 835       707/1265
(55 %)
29 diff
(97.8 %id)
TI_1948128414   .b 346 to 1212 128 to 988       861/1160
(74 %)
28 diff
(97.6 %id)
TI_1948128430   .b 346 to 1111 137 to 896       760/1146
(66 %)
30 diff
(97.4 %id)
TI_1948128431   .b 346 to 1071 138 to 867       730/1209
(60 %)
15 diff
(98.8 %id)
CA776703 Pancreas, Purified pancreatic islet .b 539 to 1153 1 to 615       615/615
(100 %)
0 diff
(100 %id)
CA778268 Pancreas, Purified pancreatic islet .b 539 to 1360 1 to 822       822/822
(100 %)
2 diff
(99.8 %id)
DA401809 thalamus .b 720 to 1201 2 to 483   capped   482/482
(100 %)
0 diff
(100 %id)
TI_1948128417   .b 749 to 1636 1017 to 130       888/1074
(82 %)
50 diff
(95.4 %id)
BG388323 embryonal carcinoma, cell line, testis .b 758 to 1485 1 to 727       727/1080
(67 %)
5 diff
(99.6 %id)
TI_1948129106   .b 758 to 1636 1001 to 128       874/1074
(81 %)
24 diff
(97.8 %id)
TI_1948128083   .b 789 to 1629 966 to 131       836/1056
(79 %)
32 diff
(97.0 %id)
TI_1948128760   .b 857 to 1636 912 to 127       786/1087
(72 %)
32 diff
(97.1 %id)
TI_2194577642   .b 864 to 1693 1 to 828       828/1173
(70 %)
7 diff
(99.5 %id)
TI_1948128433   .b 868 to 1636 885 to 127       759/1065
(71 %)
20 diff
(98.2 %id)
TI_1948129091   .b 911 to 1636 849 to 126       724/1057
(68 %)
22 diff
(98.0 %id)
TI_1948128082   .b 913 to 1629 857 to 132       726/1380
(52 %)
47 diff
(96.6 %id)
CA776471 Pancreas, Purified pancreatic islet .b 1662 to 2109 448 to 1       448/448
(100 %)
0 diff
(100 %id)
AU117590 whole embryo, mainly head .c 1 to 767 36 to 800   tiling clone, capped   765/799
(95 %)
15 diff
(98.2 %id)
AU144379 whole embryo, mainly head .c 1389 to 1945 556 to 1   tiling clone,   556/556
(100 %)
1 diff
(99.9 %id)
BG390380 embryonal carcinoma, cell line, testis .d 1 to 545 1 to 546   tiling clone,   546/546
(100 %)
2 diff
(99.7 %id)
DA603678   .d 46 to 560 2 to 517   tiling clone, capped   516/516
(100 %)
1 diff
(99.9 %id)
TI_2194576001   .d 221 to 1357 48 to 1170       1123/1288
(87 %)
21 diff
(98.4 %id)
TI_2194578960   .d 221 to 1449 51 to 1262       1212/1266
(95 %)
42 diff
(96.7 %id)
BC143256 Brain, cerebral cortex, PCR rescued clones .d 223 to 1810 1 to 1588 exact tiling clone,   1588/1588
(100 %)
0 diff
(100 %id)
TI_2194577641   .d 548 to 1748 8 to 1191       1186/1209
(98 %)
44 diff
(96.4 %id)
TI_2194576384   .d 728 to 1812 1147 to 68 exact tiling clone,   1080/1305
(82 %)
9 diff
(99.4 %id)
TI_2194578962   .d 778 to 1812 1100 to 72 exact     1029/1271
(80 %)
9 diff
(99.3 %id)
DA715051   .e 1 to 567 2 to 570   tiling clone, capped   569/569
(100 %)
2 diff
(99.7 %id)
CX751795 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .e 10 to 735 1 to 726 exact tiling clone, Submitted on the opposite strand 726/726
(100 %)
0 diff
(100 %id)
BF351585 head_neck .f 1 to 445 453 to 2 Q2L A3L S4L S5P H43R ... tiling clone,   452/454
(99 %)
35 diff
(92.3 %id)
BQ181207 Knee, Osteoarthritic Cartilage .g-u 1 to 710 709 to 1 S25X tiling clone,   709/709
(100 %)
1 diff
(99.9 %id)
TI_2194577755   Gene SMAD9, variant not shown         This clone was ignored    
BF529780 anaplastic oligodendroglioma with 1p/19qloss, brain Gene SMAD9, variant not shown         This clone was ignored    
BG501703 embryonal carcinoma, testis Gene SMAD9, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI