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Gene SLCO3A1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
300 supporting clones for gene SLCO3A1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_013272.3   .a 1 to 5106 1 to 5106 exact RefSeq,   5106/5106
(100 %)
0 diff
(100 %id)
AB031050 Kidney .a 9 to 2748 1 to 2740   tiling clone,   2740/2740
(100 %)
10 diff
(99.7 %id)
AF205074   .a 17 to 2740 5 to 2728   tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 2724/2728
(99 %)
8 diff
(99.8 %id)
AK290872   .a 163 to 2627 1 to 2465   tiling clone,   2465/2465
(100 %)
4 diff
(99.9 %id)
AF187816   .a 202 to 2334 1 to 2133       2133/2133
(100 %)
1 diff
(100.0 %id)
BU163185 melanotic melanoma, cell line, skin .a 1620 to 2542 27 to 957       931/958
(97 %)
20 diff
(98.0 %id)
BQ683102 melanotic melanoma, cell line, skin .a 1620 to 2290 1 to 679       679/1013
(67 %)
21 diff
(98.0 %id)
BQ878301 melanotic melanoma, cell line, skin .a 1621 to 2519 1 to 901       901/901
(100 %)
9 diff
(99.1 %id)
BQ877250 melanotic melanoma, cell line, skin .a 1621 to 2481 1 to 863       863/868
(99 %)
8 diff
(99.1 %id)
BQ682470 melanotic melanoma, cell line, skin .a 1621 to 2504 1 to 891       891/911
(97 %)
24 diff
(97.4 %id)
BU161162 melanotic melanoma, cell line, skin .a 1621 to 2496 1 to 885       885/886
(99 %)
15 diff
(98.4 %id)
BU174486 melanotic melanoma, cell line, skin .a 1621 to 2437 1 to 818       818/818
(100 %)
5 diff
(99.4 %id)
BU163383 melanotic melanoma, cell line, skin .a 1621 to 2489 1 to 878       878/880
(99 %)
20 diff
(97.8 %id)
BQ675933 melanotic melanoma, cell line, skin .a 1621 to 2442 1 to 829       829/912
(90 %)
17 diff
(98.2 %id)
CV571520 cornea, eye .a 1662 to 2221 1 to 560       560/560
(100 %)
0 diff
(100 %id)
BE467492 carcinoid, lung .a 1793 to 2306 1 to 514     Submitted on the opposite strand 514/514
(100 %)
0 diff
(100 %id)
AW821213 stomach .a 1829 to 2231 69 to 470       402/470
(85 %)
10 diff
(97.9 %id)
DA807533 brain .a 1914 to 2455 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
AA843188 parathyroid gland, parathyroid tumor .a 1932 to 2388 493 to 37   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 457/457
(100 %)
1 diff
(99.8 %id)
BG193475   .a 1966 to 2757 826 to 43     Submitted on the opposite strand 784/885
(88 %)
0 diff
(100 %id)
BG195935   .a 1984 to 2737 1 to 749       749/760
(98 %)
6 diff
(99.3 %id)
DB120039 thymus .a 2007 to 2562 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AA075158   .a 2020 to 2304 1 to 286   fully sequenced, AAA   286/286
(100 %)
3 diff
(99.0 %id)
BF770936 epid_tumor .a 2040 to 2417 445 to 67     Submitted on the opposite strand 379/457
(82 %)
0 diff
(100 %id)
TI_149292530   .a 2040 to 2745 789 to 84   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 706/706
(100 %)
2 diff
(99.8 %id)
CA307058 Alveolar Macrophage, lung .a 2042 to 2745 716 to 14   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 703/703
(100 %)
2 diff
(99.8 %id)
BP351021   .a 2050 to 2630 1 to 583       583/583
(100 %)
7 diff
(98.8 %id)
BX393465 Neuroblastoma Cot 10-normalized .a 2056 to 2669 683 to 70       614/683
(89 %)
0 diff
(100 %id)
AA478903 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2068 to 2428 1 to 356   fully sequenced,   356/356
(100 %)
7 diff
(98.1 %id)
AU252691 neuroblastoma .a 2076 to 2745 700 to 32   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 669/669
(100 %)
28 diff
(95.9 %id)
BM974617 lung .a 2079 to 2745 680 to 14   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 667/667
(100 %)
0 diff
(100 %id)
BI335893 skin .a 2123 to 2397 1 to 275       275/275
(100 %)
0 diff
(100 %id)
BF854811 prostate_normal .a 2204 to 2455 255 to 3     Submitted on the opposite strand 253/255
(99 %)
0 diff
(100 %id)
AA053855 eye, retina .a 2222 to 2700 478 to 1     Submitted on the opposite strand 478/590
(81 %)
5 diff
(99.2 %id)
DR421873 eye, Pterygium .a 2226 to 2842 1 to 617       617/617
(100 %)
35 diff
(94.4 %id)
AA826045 germinal center B cell .a 2254 to 2753 500 to 2       499/500
(99 %)
0 diff
(100 %id)
AA075159   .a 2274 to 2749 476 to 1   fully sequenced,   476/476
(100 %)
2 diff
(99.6 %id)
AI198687   .a 2277 to 2748 472 to 1       472/472
(100 %)
2 diff
(99.6 %id)
AW609559 stomach .a 2290 to 2475 10 to 194       185/200
(92 %)
8 diff
(96.0 %id)
AI802939 pooled .a 2298 to 2748 451 to 1       451/451
(100 %)
0 diff
(100 %id)
AW117252 pooled .a 2298 to 2758 461 to 1       461/461
(100 %)
1 diff
(99.8 %id)
AI081321 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2299 to 2747 449 to 1       449/449
(100 %)
0 diff
(100 %id)
AW514188 pooled .a 2299 to 2758 459 to 1       459/459
(100 %)
1 diff
(99.8 %id)
AW665176 pooled .a 2316 to 2748 433 to 1       433/433
(100 %)
1 diff
(99.8 %id)
BQ918277 sciatic nerve .a 2318 to 3139 1 to 831   tiling clone,   831/934
(88 %)
11 diff
(98.9 %id)
AA826044 germinal center B cell .a 2321 to 2753 434 to 2       433/434
(99 %)
0 diff
(100 %id)
AA703951   .a 2328 to 2745 417 to 1     Submitted on the opposite strand 417/417
(100 %)
3 diff
(99.3 %id)
DB514414 testis .a 2345 to 2771 1 to 428     Submitted on the opposite strand 428/432
(99 %)
28 diff
(93.6 %id)
AI082669 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2363 to 2741 377 to 1       377/377
(100 %)
6 diff
(98.5 %id)
AA729909 pooled germ cell tumors .a 2373 to 2770 397 to 1       397/397
(100 %)
5 diff
(98.8 %id)
BM828073 Ascites, stomach .a 2379 to 2940 1 to 562       562/562
(100 %)
3 diff
(99.5 %id)
T80850 liver and spleen .a 2398 to 2739 349 to 1       349/349
(100 %)
12 diff
(96.6 %id)
AA478784 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2398 to 2746 349 to 1   fully sequenced,   349/349
(100 %)
4 diff
(98.9 %id)
AA806497 germinal center B cell .a 2401 to 2753 354 to 2       353/354
(99 %)
0 diff
(100 %id)
AA832280 germinal center B cell .a 2406 to 2745 382 to 43   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 340/340
(100 %)
3 diff
(99.2 %id)
BF594189 brain, glioblastoma (pooled) .a 2492 to 2767 276 to 1   tiling clone,   276/276
(100 %)
2 diff
(99.3 %id)
H56516 pineal gland .a 2504 to 2741 1 to 238       238/238
(100 %)
2 diff
(99.2 %id)
DW432210 Liver .a 2546 to 2768 10 to 232       223/266
(83 %)
12 diff
(95.5 %id)
AA015820 eye, retina .a 2583 to 2700 118 to 1     Submitted on the opposite strand 118/126
(93 %)
0 diff
(100 %id)
AA082154 heart .a 2602 to 2728 1 to 126       126/126
(100 %)
1 diff
(99.3 %id)
DA736500   .a 2727 to 3598 2 to 870   tiling clone, capped   869/869
(100 %)
8 diff
(99.1 %id)
H56698 pineal gland .a 2814 to 3199 389 to 1       389/389
(100 %)
5 diff
(98.8 %id)
AI279181 carcinoid, lung .a 4506 to 5005 8 to 507   tiling clone, Submitted on the opposite strand 500/507
(98 %)
6 diff
(98.9 %id)
AI339933 carcinoid, lung .a 4511 to 4947 1 to 437     Submitted on the opposite strand 437/437
(100 %)
7 diff
(98.4 %id)
BE502928 carcinoid, lung .a 4511 to 5062 1 to 552     Submitted on the opposite strand 552/552
(100 %)
0 diff
(100 %id)
DB368997   .a 4541 to 5100 556 to 1       556/560
(99 %)
14 diff
(97.5 %id)
AI685873 Prostate .a 4591 to 5106 516 to 1   tiling clone,   516/516
(100 %)
0 diff
(100 %id)
BF062049 pooled germ cell tumors .a 4595 to 5102 512 to 5       508/512
(99 %)
0 diff
(100 %id)
TI_153989502   .a 4595 to 5100 601 to 96   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 506/506
(100 %)
13 diff
(97.5 %id)
AI675768 pooled .a 4617 to 5102 490 to 5       486/490
(99 %)
0 diff
(100 %id)
AI768951 pooled .a 4625 to 5101 472 to 1       472/472
(100 %)
3 diff
(99.4 %id)
AI356069 brain, glioblastoma (pooled) .a 4635 to 5106 472 to 1       472/472
(100 %)
0 diff
(100 %id)
AI421413 brain, glioblastoma (pooled) .a 4638 to 5106 469 to 1       469/469
(100 %)
0 diff
(100 %id)
AI633367 pooled germ cell tumors .a 4648 to 5101 454 to 1       454/454
(100 %)
0 diff
(100 %id)
AI042521 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4660 to 5100 441 to 1       441/441
(100 %)
3 diff
(99.4 %id)
AI359612 brain, glioblastoma (pooled) .a 4668 to 5106 439 to 1       439/439
(100 %)
0 diff
(100 %id)
AI356797 brain, glioblastoma (pooled) .a 4693 to 5106 414 to 1       414/414
(100 %)
0 diff
(100 %id)
AW205561   .a 4703 to 5100 415 to 18   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 398/398
(100 %)
0 diff
(100 %id)
BF061982 pooled germ cell tumors .a 4704 to 5102 403 to 5       399/403
(99 %)
0 diff
(100 %id)
AA775372 whole brain .a 4721 to 5101 381 to 1       381/381
(100 %)
0 diff
(100 %id)
AW270599 endometrioid ovarian metastasis, ovary .a 4737 to 4973 9 to 245     Submitted on the opposite strand 237/245
(96 %)
0 diff
(100 %id)
AA781856   .a 4752 to 5102 353 to 3       351/353
(99 %)
0 diff
(100 %id)
AA729522 alveolar rhabdomyosarcoma .a 4831 to 5102 276 to 5       272/283
(96 %)
0 diff
(100 %id)
AA729157 alveolar rhabdomyosarcoma .a 4860 to 5102 247 to 5       243/247
(98 %)
0 diff
(100 %id)
AA984473 schizophrenic brain S-11 frontal lobe .a 4867 to 5093 227 to 1       227/227
(100 %)
0 diff
(100 %id)
BI462998 testis .b 1 to 658 1 to 666   tiling clone,   666/787
(84 %)
14 diff
(98.3 %id)
NM_001145044.1   .b 18 to 2870 1 to 2853   RefSeq,   2853/2853
(100 %)
0 diff
(100 %id)
BU151548 ductal carcinoma, cell line, Pancreas .b 34 to 711 7 to 695       689/1061
(64 %)
31 diff
(97.1 %id)
BQ888786 ductal carcinoma, cell line, Pancreas .b 34 to 768 27 to 766       740/978
(75 %)
22 diff
(97.8 %id)
BQ689234 ductal carcinoma, cell line, Pancreas .b 38 to 787 20 to 775       756/946
(79 %)
40 diff
(95.8 %id)
BU151647 ductal carcinoma, cell line, Pancreas .b 40 to 743 1 to 707       707/1031
(68 %)
16 diff
(98.5 %id)
BU168808 ductal carcinoma, cell line, Pancreas .b 40 to 667 1 to 636       636/1183
(53 %)
24 diff
(98.0 %id)
BU196794 ductal carcinoma, cell line, Pancreas .b 40 to 603 1 to 566       566/1272
(44 %)
14 diff
(98.9 %id)
BQ897211 ductal carcinoma, cell line, Pancreas .b 40 to 657 1 to 621       621/1085
(57 %)
15 diff
(98.7 %id)
BQ897227 ductal carcinoma, cell line, Pancreas .b 40 to 657 1 to 621       621/1051
(59 %)
7 diff
(99.4 %id)
BQ691072 ductal carcinoma, cell line, Pancreas .b 40 to 788 1 to 754       754/912
(82 %)
20 diff
(97.9 %id)
BQ689260 ductal carcinoma, cell line, Pancreas .b 40 to 741 1 to 705       705/927
(76 %)
9 diff
(99.1 %id)
BQ889179 ductal carcinoma, cell line, Pancreas .b 40 to 853 1 to 816       816/911
(89 %)
17 diff
(98.2 %id)
BQ690691 ductal carcinoma, cell line, Pancreas .b 40 to 631 1 to 596       596/1074
(55 %)
11 diff
(99.0 %id)
BQ877977 ductal carcinoma, cell line, Pancreas .b 40 to 751 1 to 720       720/926
(77 %)
26 diff
(97.2 %id)
BU145836 ductal carcinoma, cell line, Pancreas .b 40 to 408 1 to 369       369/1318
(27 %)
6 diff
(99.6 %id)
BQ688839 ductal carcinoma, cell line, Pancreas .b 40 to 563 1 to 525       525/1207
(43 %)
15 diff
(98.8 %id)
BQ685716 ductal carcinoma, cell line, Pancreas .b 40 to 706 1 to 670       670/903
(74 %)
17 diff
(98.2 %id)
BQ687512 ductal carcinoma, cell line, Pancreas .b 40 to 650 1 to 616       616/1064
(57 %)
16 diff
(98.5 %id)
BQ688663 ductal carcinoma, cell line, Pancreas .b 40 to 862 1 to 825   tiling clone,   825/952
(86 %)
17 diff
(98.3 %id)
BQ686609 ductal carcinoma, cell line, Pancreas .b 40 to 813 1 to 777       777/899
(86 %)
15 diff
(98.4 %id)
BQ688522 ductal carcinoma, cell line, Pancreas .b 40 to 708 1 to 669       669/937
(71 %)
24 diff
(97.5 %id)
BQ691234 ductal carcinoma, cell line, Pancreas .b 40 to 649 1 to 613       613/995
(61 %)
14 diff
(98.6 %id)
BQ686700 ductal carcinoma, cell line, Pancreas .b 40 to 729 1 to 693       693/977
(70 %)
6 diff
(99.4 %id)
DB505852 hypothalamus .b 51 to 562 1 to 512       512/513
(99 %)
4 diff
(99.3 %id)
DR003165 fetal brain .b 52 to 565 29 to 542       514/542
(94 %)
6 diff
(98.9 %id)
DA737593   .b 64 to 865 2 to 805   capped   804/818
(98 %)
22 diff
(97.4 %id)
BQ643362 lymph, lymphoma, cell line .b 99 to 737 1 to 659       659/1107
(59 %)
24 diff
(97.9 %id)
BM547212 brain, hippocampus .b 100 to 717 655 to 39     Submitted on the opposite strand 617/1082
(57 %)
13 diff
(98.8 %id)
DA392614 thalamus .b 130 to 718 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
BI462080 testis .b 142 to 525 1 to 384       384/384
(100 %)
3 diff
(99.3 %id)
BI463100 testis .b 145 to 525 1 to 381       381/381
(100 %)
5 diff
(98.7 %id)
DB443553 testis .b 147 to 598 1 to 452       452/454
(99 %)
2 diff
(99.6 %id)
DA773670 brain .b 151 to 728 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
BG773377 testis .b 154 to 707 1 to 554       554/554
(100 %)
6 diff
(99.0 %id)
BI461706 testis .b 154 to 525 1 to 371       371/371
(100 %)
8 diff
(97.9 %id)
BC000585 Brain, neuroblastoma .b 166 to 2870 1 to 2705   tiling clone, available from MGC, AAA   2705/2705
(100 %)
6 diff
(99.8 %id)
BM452728 lymph, lymphoma, cell line .b 179 to 786 1 to 609       609/1100
(55 %)
10 diff
(99.1 %id)
DA536699 heart .b 181 to 750 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DA651048   .b 181 to 751 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
DB448907 testis .b 206 to 644 1 to 439       439/439
(100 %)
5 diff
(98.9 %id)
DR002705 fetal brain .b 206 to 561 1 to 356       356/357
(99 %)
9 diff
(97.5 %id)
CV029261 mixed .b 219 to 861 1 to 642       642/642
(100 %)
11 diff
(98.3 %id)
TI_1948140583   .b 219 to 689 127 to 600       474/1304
(36 %)
18 diff
(98.7 %id)
TI_1948140584   .b 219 to 865 134 to 780       647/1390
(46 %)
11 diff
(99.3 %id)
TI_1948140915   .b 219 to 795 126 to 701       576/1427
(40 %)
22 diff
(98.5 %id)
TI_1948140916   .b 219 to 865 131 to 777       647/1400
(46 %)
8 diff
(99.5 %id)
TI_1948141255   .b 219 to 865 131 to 777       647/1371
(47 %)
8 diff
(99.5 %id)
TI_1948141591   .b 219 to 762 126 to 672       547/1306
(41 %)
31 diff
(97.7 %id)
TI_1948141592   .b 219 to 1136 130 to 1041       912/1342
(67 %)
19 diff
(98.6 %id)
CD300607 testis .b 236 to 865 1 to 630       630/863
(73 %)
4 diff
(99.6 %id)
BQ066581 lymph, lymphoma, cell line .b 242 to 865 1 to 624       624/1031
(60 %)
1 diff
(100.0 %id)
BF308969 muscle, rhabdomyosarcoma .b 314 to 865 1 to 540   AAA   540/1019
(52 %)
14 diff
(98.7 %id)
BF035089 adenocarcinoma, ovary .b 393 to 865 1 to 482       482/494
(97 %)
17 diff
(96.6 %id)
DA583843 lung .b 432 to 865 2 to 437   capped   436/594
(73 %)
3 diff
(99.5 %id)
BU188362 melanotic melanoma, skin .b 460 to 865 1 to 406       406/972
(41 %)
1 diff
(99.9 %id)
DB250677 uterus .b 467 to 1040 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
CX758563 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 499 to 1193 1 to 695     Submitted on the opposite strand 695/695
(100 %)
3 diff
(99.6 %id)
CD244363 testis .b 588 to 1392 1 to 813   tiling clone,   813/872
(93 %)
15 diff
(98.3 %id)
DA307025 hippocampus .b 619 to 1073 2 to 456   capped   455/456
(99 %)
3 diff
(99.4 %id)
DA903228   .b 619 to 1131 2 to 514   capped   513/513
(100 %)
1 diff
(99.9 %id)
BQ716488 sympathetic trunk .b 855 to 1689 22 to 862       841/903
(93 %)
22 diff
(97.6 %id)
CD358568 testis .b 855 to 1568 62 to 783       722/850
(84 %)
28 diff
(96.8 %id)
BM751015 Ascites, stomach .b 855 to 1258 110 to 513       404/513
(78 %)
7 diff
(98.7 %id)
BP345073 synovial membrane .b 855 to 1330 108 to 583       476/583
(81 %)
7 diff
(98.8 %id)
BG196169   .b 862 to 1708 1 to 836       836/839
(99 %)
42 diff
(95.0 %id)
BG210129   .b 862 to 1690 1 to 830       830/830
(100 %)
10 diff
(98.8 %id)
DA009781 adrenal gland .b 864 to 1350 82 to 569   capped   488/568
(85 %)
12 diff
(97.9 %id)
BE739886 adenocarcinoma cell line, ovary .b 869 to 1570 1 to 702       702/703
(99 %)
2 diff
(99.8 %id)
DA284579 corpus callosum .b 870 to 1436 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
CB152235 brain .b 872 to 1431 1 to 560       560/560
(100 %)
2 diff
(99.7 %id)
BF310655 brain, neuroblastoma .b 1112 to 1912 1 to 807       805/1110
(72 %)
46 diff
(95.9 %id)
BE206219 carcinoma cell line, cervix .b 1145 to 1574 1 to 431     Submitted on the opposite strand 431/431
(100 %)
3 diff
(99.4 %id)
BF743067 breast .b 1190 to 1332 1 to 143       143/152
(94 %)
3 diff
(98.1 %id)
AI680828 carcinoid, lung .b 1293 to 1708 1 to 416     Submitted on the opposite strand 416/416
(100 %)
3 diff
(99.3 %id)
BE747478 adenocarcinoma cell line, ovary .b 1312 to 1972 31 to 697       667/762
(87 %)
26 diff
(96.6 %id)
BG677918 skin, squamous cell carcinoma .b 1389 to 2215 1 to 839       839/1015
(82 %)
19 diff
(98.2 %id)
BX371364 Neuroblastoma Cot 10-normalized .b 1392 to 2222 844 to 1       844/845
(99 %)
28 diff
(96.7 %id)
TI_1948140585   .b 1392 to 2303 1034 to 122       913/1286
(70 %)
21 diff
(98.4 %id)
TI_1948140917   .b 1392 to 2293 1032 to 131       902/1314
(68 %)
21 diff
(98.5 %id)
TI_1948141256   .b 1392 to 2303 1027 to 122       906/1290
(70 %)
23 diff
(98.3 %id)
TI_1948141594   .b 1405 to 2303 1023 to 121       903/1314
(68 %)
33 diff
(97.5 %id)
TI_1948141593   .b 1407 to 2303 1007 to 123       885/1255
(70 %)
27 diff
(97.9 %id)
BF821543 kidney_tumor .b 1501 to 1806 9 to 311       303/342
(88 %)
29 diff
(91.6 %id)
BE844153 testis_normal .b 1503 to 1964 8 to 466       459/466
(98 %)
6 diff
(98.8 %id)
BE927899 colon .b 1503 to 1978 1 to 475       475/475
(100 %)
5 diff
(99.0 %id)
CD705010 normal nasopharynx .b 1559 to 1807 14 to 262       249/262
(95 %)
6 diff
(97.8 %id)
BQ083637 stomach .b 1570 to 1996 1 to 427       427/427
(100 %)
0 diff
(100 %id)
EH337699   .b 1582 to 1657 1 to 76       76/76
(100 %)
0 diff
(100 %id)
TI_1948140586   .b 1591 to 2303 852 to 132       721/1376
(52 %)
24 diff
(98.3 %id)
TI_1948141257   .b 1608 to 2303 845 to 132       714/1469
(48 %)
43 diff
(97.1 %id)
TI_1948140918   .b 1609 to 2293 826 to 139       688/1429
(48 %)
9 diff
(99.4 %id)
BG149919 carcinoid, lung .b 1809 to 2204 1 to 396     Submitted on the opposite strand 396/396
(100 %)
7 diff
(98.3 %id)
C01469   .b 1862 to 2045 1 to 184       184/188
(97 %)
4 diff
(97.9 %id)
CR737313   .b 2199 to 2738 1 to 540       540/540
(100 %)
2 diff
(99.7 %id)
DB370204   .b 2317 to 2870 555 to 1       555/560
(99 %)
8 diff
(98.6 %id)
DB058092 testis .c 1 to 397 2 to 399   tiling clone, capped   398/398
(100 %)
1 diff
(99.8 %id)
DB041330 testis .c 4 to 557 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
AK310306 testis .c 29 to 1878 1 to 1851 E179D tiling clone,   1851/1851
(100 %)
3 diff
(99.9 %id)
DB451802 testis .c 29 to 522 1 to 494       494/494
(100 %)
1 diff
(99.8 %id)
DB045554 testis .c 29 to 530 2 to 503   capped   502/502
(100 %)
0 diff
(100 %id)
DB033963 testis .c 30 to 589 2 to 561   tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
DB048938 testis .c 30 to 570 2 to 544   capped   543/567
(95 %)
4 diff
(99.3 %id)
DB051639 testis .c 30 to 589 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DB508493 testis .c 1564 to 1928 23 to 390     Submitted on the opposite strand 368/391
(94 %)
10 diff
(97.5 %id)
AV722830 hypothalamus .c 1862 to 2497 1 to 627   tiling clone,   627/631
(99 %)
9 diff
(98.6 %id)
BI041944 nervous_tumor .c 2229 to 2634 1 to 406   tiling clone,   406/406
(100 %)
1 diff
(99.8 %id)
BM544618 brain, hippocampus .d 1 to 1029 19 to 1058   tiling clone,   1040/1059
(98 %)
42 diff
(96.1 %id)
CD652207 Embryonic Stem cells .d 762 to 1515 12 to 755   tiling clone,   744/805
(92 %)
21 diff
(97.4 %id)
AK057031   .e 1 to 2091 2 to 2092 E13D tiling clone, available from FLJ,   2092/2092
(100 %)
5 diff
(99.8 %id)
DA901213   .e 1 to 503 2 to 504   capped   503/503
(100 %)
4 diff
(99.3 %id)
DB331128   .e 1572 to 2091 520 to 1       520/520
(100 %)
1 diff
(99.9 %id)
BE938724 testis_normal .f 1 to 516 8 to 523   tiling clone,   516/523
(98 %)
9 diff
(98.3 %id)
BM906998 brain, hippocampus .f 462 to 1106 10 to 656   tiling clone,   647/1137
(56 %)
7 diff
(99.4 %id)
AI681079 carcinoid, lung .f 567 to 1103 532 to 1       532/581
(91 %)
16 diff
(97.3 %id)
AW873583 pooled .f 596 to 1104 513 to 5   tiling clone,   509/513
(99 %)
0 diff
(100 %id)
DB577147 hypothalamus .f 614 to 1103 1 to 490     Submitted on the opposite strand 490/491
(99 %)
2 diff
(99.6 %id)
AI418003 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 630 to 1104 474 to 1       474/474
(100 %)
2 diff
(99.6 %id)
DB528115 testis .f 646 to 1104 1 to 459   AAA Submitted on the opposite strand 459/459
(100 %)
4 diff
(99.2 %id)
BF448343 carcinoid, lung .f 648 to 1104 460 to 4   tiling clone,   457/460
(99 %)
0 diff
(100 %id)
AI024629   .f 736 to 1104 385 to 17   AAA   369/369
(100 %)
4 diff
(99.0 %id)
BX097418 whole brain .f 760 to 1104 359 to 15   AAA   345/345
(100 %)
1 diff
(99.8 %id)
AA758802   .f 780 to 1104 327 to 3       325/327
(99 %)
0 diff
(100 %id)
AA770128   .f 785 to 850 66 to 1       66/66
(100 %)
0 diff
(100 %id)
AA905829 pooled .f 794 to 1104 314 to 4       311/314
(99 %)
0 diff
(100 %id)
AI968261 pooled germ cell tumors .f 794 to 1104 318 to 8       311/318
(97 %)
0 diff
(100 %id)
AI695406 pooled .f 827 to 1104 282 to 5       278/283
(98 %)
0 diff
(100 %id)
AA912412 pooled .f 855 to 1104 250 to 1       250/250
(100 %)
0 diff
(100 %id)
BM750662 Ascites, stomach .g 1 to 617 1 to 617   tiling clone,   617/617
(100 %)
0 diff
(100 %id)
TI_151803065   .g 511 to 992 23 to 503   tiling clone,   481/827
(58 %)
23 diff
(97.3 %id)
BE899470 adenocarcinoma cell line, ovary .h 1 to 766 1 to 759 F63L P66H Q67S S68P L69C ... tiling clone,   759/916
(82 %)
20 diff
(97.9 %id)
BI911985 leukocyte .i 1 to 648 31 to 678 A2R tiling clone,   648/678
(95 %)
5 diff
(99.3 %id)
TI_57234250   .i 1 to 648 31 to 678 A2R     648/678
(95 %)
5 diff
(99.3 %id)
AA707527   .i 463 to 954 492 to 1       492/492
(100 %)
6 diff
(98.8 %id)
DB517304 testis .i 516 to 960 1 to 445   tiling clone, Submitted on the opposite strand 445/445
(100 %)
2 diff
(99.6 %id)
DB511678 testis .i 568 to 960 1 to 394   AAA Submitted on the opposite strand 394/394
(100 %)
15 diff
(96.2 %id)
AW138118   .i 926 to 1456 530 to 1   tiling clone,   530/534
(99 %)
4 diff
(99.3 %id)
BM718258 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 928 to 1444 1 to 516   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 516/516
(100 %)
1 diff
(99.9 %id)
BM930554 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 928 to 1444 1 to 516   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 516/516
(100 %)
2 diff
(99.7 %id)
BM930668 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 928 to 1444 1 to 516   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 516/516
(100 %)
1 diff
(99.9 %id)
BQ186198 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 928 to 1444 1 to 516   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 516/516
(100 %)
6 diff
(98.9 %id)
BE465079 carcinoid, lung .i 967 to 1438 472 to 1       472/472
(100 %)
3 diff
(99.4 %id)
AI694530 carcinoid, lung .i 969 to 1438 470 to 1       470/470
(100 %)
0 diff
(100 %id)
AI333319 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 980 to 1439 460 to 1       460/460
(100 %)
1 diff
(99.8 %id)
AI376359   .i 984 to 1439 456 to 1       456/456
(100 %)
0 diff
(100 %id)
BM712143 eye, lens .i 985 to 1453 1 to 469       469/500
(93 %)
9 diff
(98.2 %id)
AI290810 carcinoid, lung .i 989 to 1438 450 to 1       450/450
(100 %)
2 diff
(99.6 %id)
BM697511 eye, fetal eyes .i 993 to 1647 1 to 655   tiling clone,   655/655
(100 %)
0 diff
(100 %id)
AI824343 carcinoid, lung .i 1020 to 1438 419 to 1       419/419
(100 %)
0 diff
(100 %id)
BG153445 carcinoid, lung .i 1140 to 1442 303 to 1       303/303
(100 %)
2 diff
(99.4 %id)
AI567819 ovary, tumor, 5 pooled (see description) .i 1269 to 1469 202 to 2       201/202
(99 %)
0 diff
(100 %id)
BE217940 carcinoid, lung .i 1278 to 1469 192 to 1       192/192
(100 %)
0 diff
(100 %id)
N63059 multiple sclerosis lesions .i 1315 to 1742 437 to 1       437/448
(97 %)
10 diff
(97.8 %id)
AA320311 adipose tissue, white .i 1327 to 1595 1 to 269       269/269
(100 %)
1 diff
(99.7 %id)
AW954965   .i 1328 to 1967 1 to 639   tiling clone,   639/639
(100 %)
8 diff
(98.8 %id)
AW770678 carcinoid, lung .i 1329 to 1444 120 to 6       115/120
(95 %)
0 diff
(100 %id)
EH322764   .i 1351 to 1426 1 to 76       76/76
(100 %)
0 diff
(100 %id)
FN127495 breast carcinoma .i 1513 to 1596 83 to 3     Submitted on the opposite strand 81/83
(97 %)
0 diff
(100 %id)
CK002410 brain/CNS, Bulk tissue from Human Spinal cord .i 1709 to 2363 1 to 649       649/651
(99 %)
17 diff
(97.4 %id)
W38672 parathyroid gland, parathyroid tumor .i 1897 to 2483 1 to 591   tiling clone,   591/591
(100 %)
8 diff
(98.7 %id)
AA280220 germinal center B cell .i 1919 to 2482 1 to 564   tiling clone,   564/564
(100 %)
8 diff
(98.6 %id)
AA417621 germinal center B cell .i 1943 to 2359 1 to 416       416/416
(100 %)
5 diff
(98.8 %id)
TI_149301515   .i 2026 to 2909 945 to 78   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 868/936
(92 %)
20 diff
(97.9 %id)
BM725425 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 2087 to 2603 1 to 517       517/517
(100 %)
4 diff
(99.3 %id)
BU633943 cell lines, Chondrosarcoma .i 2232 to 2930 721 to 19   AAA   703/703
(100 %)
5 diff
(99.3 %id)
BU685119 lung, Primary Lung Cystic Fibrosis EpithelialCells .i 2247 to 2909 678 to 17   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 662/662
(100 %)
1 diff
(99.9 %id)
BF934792 nervous_tumor .i 2249 to 2685 460 to 23     Submitted on the opposite strand 438/460
(95 %)
0 diff
(100 %id)
BE072056 breast .i 2279 to 2620 1 to 342       342/342
(100 %)
11 diff
(96.8 %id)
AW976431   .i 2325 to 2937 617 to 1     Submitted on the opposite strand 617/620
(99 %)
10 diff
(98.4 %id)
BF056907 pooled germ cell tumors .i 2358 to 2930 573 to 1   tiling clone,   573/574
(99 %)
0 diff
(100 %id)
BM670207 eye, lens .i 2373 to 2936 582 to 19   AAA   564/571
(98 %)
2 diff
(99.7 %id)
AW340018 pooled .i 2424 to 2938 516 to 2       515/516
(99 %)
0 diff
(100 %id)
BE671835 pooled germ cell tumors .i 2432 to 2930 499 to 1       499/499
(100 %)
0 diff
(100 %id)
DW452471 Liver .i 2452 to 2627 17 to 192       176/192
(91 %)
6 diff
(96.9 %id)
AA743205 germinal center B cell .i 2469 to 2938 481 to 13   AAA   469/469
(100 %)
5 diff
(99.0 %id)
AA700311 liver and spleen .i 2470 to 2905 436 to 1       436/436
(100 %)
2 diff
(99.6 %id)
TI_154034564   .i 2495 to 2930 517 to 82   AAA   436/807
(54 %)
3 diff
(99.7 %id)
AW291706   .i 2501 to 2907 422 to 16   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 407/407
(100 %)
3 diff
(99.3 %id)
AA417622 germinal center B cell .i 2503 to 2909 407 to 1       407/407
(100 %)
4 diff
(99.1 %id)
AA399615 ovarian tumor, ovary .i 2508 to 2867 1 to 360       360/360
(100 %)
2 diff
(99.5 %id)
BE072068 breast .i 2510 to 2901 392 to 1     Submitted on the opposite strand 392/392
(100 %)
13 diff
(96.7 %id)
AI962649 pooled germ cell tumors .i 2521 to 2933 413 to 1       413/413
(100 %)
1 diff
(99.8 %id)
AW883653 ovary .i 2542 to 2841 1 to 300       300/309
(97 %)
6 diff
(98.1 %id)
CA443649 lung, Metastatic Chondrosarcoma .i 2550 to 2930 399 to 19   AAA   381/381
(100 %)
1 diff
(99.8 %id)
AA281462 germinal center B cell .i 2569 to 2941 373 to 1       373/373
(100 %)
1 diff
(99.8 %id)
BM677851 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 2633 to 2938 324 to 19   tiling clone, AAA   306/306
(100 %)
1 diff
(99.7 %id)
BF433746 carcinoid, lung .i 2660 to 2936 292 to 16   AAA   277/277
(100 %)
4 diff
(98.6 %id)
AW003026 pooled germ cell tumors .i 2662 to 2930 269 to 1       269/269
(100 %)
0 diff
(100 %id)
AK124270 liver, tumor tissue .j-u 1 to 1970 2 to 1972 L10F R11E W12M S13E L14S ... tiling clone, available from FLJ,   1972/1974
(99 %)
12 diff
(99.4 %id)
DB182826 liver, tumor tissue .j-u 1 to 564 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
AI908229 breast .j-u 96 to 479 1 to 385       385/397
(96 %)
9 diff
(97.8 %id)
BI836763 pooled pancreas and spleen .j-u 198 to 544 1 to 349       349/1067
(32 %)
7 diff
(99.4 %id)
TI_57164255   .j-u 198 to 544 106 to 454       349/1172
(29 %)
7 diff
(99.5 %id)
DW459335 Liver .j-u 999 to 1129 17 to 148   tiling clone,   132/148
(89 %)
6 diff
(96.0 %id)
DB347608 liver, tumor tissue .j-u 1446 to 1970 528 to 3       526/529
(99 %)
0 diff
(100 %id)
DB035692 testis .k 1 to 566 2 to 567 exact tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
AL109695   .l-u 1 to 1564 1 to 1564 exact tiling clone, AAA   1564/1564
(100 %)
1 diff
(100.0 %id)
F13203 brain, total brain .l-u 1 to 366 1 to 366       366/366
(100 %)
0 diff
(100 %id)
Z45959 brain, total brain .l-u 1 to 329 1 to 329       329/329
(100 %)
0 diff
(100 %id)
R53426 whole brain .l-u 28 to 382 1 to 355       355/355
(100 %)
1 diff
(99.8 %id)
BE142144 head_neck .l-u 123 to 460 341 to 2     Submitted on the opposite strand 340/361
(94 %)
0 diff
(100 %id)
T75397 whole brain .l-u 129 to 534 1 to 414       414/417
(99 %)
12 diff
(97.2 %id)
R38708 whole brain .l-u 1219 to 1564 375 to 24   AAA   352/354
(99 %)
7 diff
(98.1 %id)
F10805 brain, total brain .l-u 1272 to 1564 293 to 1       293/293
(100 %)
2 diff
(99.4 %id)
Z41576 brain, total brain .l-u 1294 to 1564 271 to 1       271/271
(100 %)
1 diff
(99.7 %id)
AA280224 germinal center B cell .m 1 to 512 1 to 510 A81Q V82C P83L E84R E85K ... tiling clone, fully sequenced,   510/510
(100 %)
3 diff
(99.5 %id)
AA281465 germinal center B cell .m 485 to 850 366 to 1   tiling clone, fully sequenced,   366/366
(100 %)
4 diff
(99.0 %id)
BM464656 lymph, lymphoma, cell line .n-u 1 to 831 1 to 833 exact tiling clone,   833/1113
(74 %)
9 diff
(99.2 %id)
BF979988 testis .o 1 to 796 829 to 20 L2F G4A C5V A6G C7A ... tiling clone,   809/878
(92 %)
25 diff
(97.2 %id)
T11562   .p-u 1 to 287 1 to 289   tiling clone,   289/289
(100 %)
6 diff
(98.0 %id)
BF846694 lung_normal .p-u 8 to 550 552 to 10 exact tiling clone, Submitted on the opposite strand 543/552
(98 %)
11 diff
(98.1 %id)
DA321469 hippocampus .p-u 68 to 502 2 to 437   tiling clone, capped   436/436
(100 %)
3 diff
(99.4 %id)
T11561   .p-u 298 to 452 159 to 1       159/159
(100 %)
6 diff
(96.3 %id)
AI400606 pooled .q 1 to 432 432 to 1 F3S L4W tiling clone,   432/436
(99 %)
3 diff
(99.4 %id)
DW408198 Liver .r-u 1 to 422 17 to 438 exact tiling clone,   422/438
(96 %)
6 diff
(98.7 %id)
AK097797 testis Gene SLCO3A1, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AK308463 adrenal gland Gene SLCO3A1, variant not shown         This clone was ignored    
BF949810 nervous_normal Gene SLCO3A1, variant not shown         Suspected internal deletion, this clone was ignored    
BX113214 multiple sclerosis lesions Gene SLCO3A1, variant not shown         Suspected internal deletion, this clone was ignored    
DA453660 tongue, tumor tissue Gene SLCO3A1, variant not shown       capped Suspected internal deletion, this clone was ignored    
DW407719 Liver Gene SLCO3A1, variant not shown         This clone was ignored    
EL955512 eyeball Gene SLCO3A1, variant not shown         Suspected internal deletion, this clone was ignored    
BF308267 muscle, rhabdomyosarcoma Gene SLCO3A1, variant not shown         Suspected internal deletion, this clone was ignored    
CF125193.
matches multiple genes
Chondrosarcoma Lung Metastasis cell lines, lung Gene SLCO3A1, variant not shown         This clone was ignored, also hits gene jawsko    
CF125193.
matches multiple genes
Chondrosarcoma Lung Metastasis cell lines, lung Gene jawsko, variant not shown         This clone was ignored, also hits gene jawsko    
DA672166   Gene SLCO3A1, variant not shown       capped Suspected internal deletion, this clone was ignored    
BM842081 lymph node, stomach Gene SLCO3A1, variant not shown         Suspected internal deletion, this clone was ignored    
DB052905 testis Gene SLCO3A1, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB338696 testis Gene SLCO3A1, variant not shown         Suspected internal deletion, this clone was ignored    
DB055121 testis Gene SLCO3A1, variant not shown       capped Suspected internal deletion, this clone was ignored    
TI_154186714.
matches multiple genes
  Gene SLCO3A1, variant not shown       AAA This clone was ignored, also hits gene jawsko    
TI_154186714.
matches multiple genes
  Gene jawsko, variant not shown       AAA This clone was ignored, also hits gene jawsko    
BM707231 eye, eye anterior segment Gene SLCO3A1, variant not shown         This clone was ignored    
BU728360 eye, eye anterior segment Gene SLCO3A1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k, .l-u, .m, .n-u, .o, .p-u, .q, .r-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI