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Gene SLC9A5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
82 supporting clones for gene SLC9A5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF111173 brain .a 1 to 3734 6 to 3741 G2R G3A P7R A8R A9P ... tiling clone, AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 3736/3741
(99 %)
26 diff
(99.4 %id)
NM_004594.2   .a 1 to 3734 1 to 3734 exact RefSeq, AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 3734/3734
(100 %)
0 diff
(100 %id)
BC142671 Donated clones,Novartis FGA collection .a 38 to 3734 1 to 3697   tiling clone, AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 3697/3697
(100 %)
1 diff
(100.0 %id)
TI_2194644271   .a 1834 to 2975 1 to 1132       1132/1189
(95 %)
26 diff
(97.9 %id)
BC150207 Donated clones,Novartis FGA collection .b 1 to 3990 1 to 3990 exact tiling clone, AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 3990/3990
(100 %)
2 diff
(100.0 %id)
TI_2194643086   .c 1 to 316 250 to 565     Submitted on the opposite strand 316/565
(55 %)
6 diff
(99.0 %id)
TI_2194645364   .c 1 to 917 49 to 973       853/1151
(74 %)
39 diff
(96.7 %id)
TI_2194646320   .c 1 to 823 54 to 875   tiling clone,   822/962
(85 %)
17 diff
(98.3 %id)
BC144131 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .c 2 to 3473 1 to 3473 exact tiling clone,   3473/3473
(100 %)
3 diff
(100.0 %id)
DB475730 hippocampus .c 78 to 588 1 to 511       511/511
(100 %)
2 diff
(99.7 %id)
TI_2194644716   .c 373 to 1055 1 to 684       684/684
(100 %)
5 diff
(99.3 %id)
TI_2194644278   .c 456 to 1564 1 to 1113       1113/1262
(88 %)
26 diff
(98.0 %id)
TI_2194643309   .c 458 to 1420 1 to 961       961/961
(100 %)
20 diff
(98.0 %id)
TI_2194643300   .c 1133 to 1775 1 to 643       643/643
(100 %)
8 diff
(98.8 %id)
TI_2194644282   .c 1146 to 2287 13 to 1139       1127/1217
(92 %)
31 diff
(97.5 %id)
AB209203 brain .d 1 to 4617 1 to 4617 exact tiling clone,   4617/4617
(100 %)
0 diff
(100 %id)
CN286524 embryonic stem cells, cell lines H1, H7, andH9 .d 1468 to 1981 1 to 515       515/515
(100 %)
1 diff
(99.9 %id)
CN286523 embryonic stem cells, cell lines H1, H7, andH9 .d 1704 to 2320 1 to 617       617/617
(100 %)
0 diff
(100 %id)
TI_2194643304   .d 1706 to 2288 25 to 608       584/608
(96 %)
20 diff
(96.8 %id)
BF742127 bocio_tumor .d 2054 to 2358 324 to 20     Submitted on the opposite strand 305/324
(94 %)
2 diff
(99.4 %id)
BG820751 anaplastic oligodendroglioma with 1p/19qloss, brain .d 2101 to 2842 1 to 688       660/873
(75 %)
28 diff
(96.8 %id)
AL137689 testis .d 2455 to 4617 1 to 2160   available from DKFZ, AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 2160/2160
(100 %)
9 diff
(99.6 %id)
DR006775 Spleen .d 2784 to 3546 8 to 768       761/768
(99 %)
7 diff
(99.1 %id)
AI909206 breast .d 2881 to 3150 1 to 270       270/270
(100 %)
7 diff
(97.5 %id)
AI909209 breast .d 2891 to 3150 1 to 261       261/261
(100 %)
4 diff
(98.5 %id)
AI909189 breast .d 2899 to 3150 13 to 264       252/264
(95 %)
12 diff
(95.5 %id)
AI909208 breast .d 2901 to 3150 1 to 251       251/252
(99 %)
4 diff
(98.5 %id)
AI909190 breast .d 2927 to 3150 1 to 221       221/221
(100 %)
3 diff
(98.7 %id)
TI_2194643296   .d 2975 to 4058 1 to 1098       1098/1099
(99 %)
47 diff
(95.8 %id)
BQ070441 brain, neuroblastoma, cell line .d 2995 to 3982 1 to 1000       1000/1002
(99 %)
25 diff
(97.6 %id)
BX433026 placenta .d 3162 to 3932 776 to 1       776/917
(84 %)
21 diff
(97.8 %id)
AA280776 germinal center B cell .d 3324 to 3628 11 to 314       304/314
(96 %)
6 diff
(98.1 %id)
TI_2194645743   .d 3497 to 4485 1058 to 73       986/1252
(78 %)
0 diff
(100 %id)
BE785338 large cell carcinoma, lung .d 3545 to 3824 284 to 2     Submitted on the opposite strand 283/284
(99 %)
0 diff
(100 %id)
BG029754 breast, mammary adenocarcinoma, cell line .d 3604 to 4383 1 to 786       786/881
(89 %)
17 diff
(98.1 %id)
BG117579 adenocarcinoma, cell line, Liver .d 3612 to 4355 1 to 746       746/758
(98 %)
16 diff
(97.9 %id)
AL568861 placenta .d 3639 to 4602 945 to 1       945/1000
(94 %)
27 diff
(97.3 %id)
TI_2194644274   .d 3678 to 4074 1 to 395       395/479
(82 %)
6 diff
(98.8 %id)
TI_2194643084   .d 3782 to 4485 848 to 140       709/852
(83 %)
0 diff
(100 %id)
TI_2194644289   .d 3787 to 4485 1 to 698       698/1295
(53 %)
9 diff
(99.4 %id)
BQ225454 epithelioid carcinoma, Pancreas .d 3908 to 4617 755 to 43   AAA Submitted on the opposite strand 713/858
(83 %)
8 diff
(99.1 %id)
TI_149285701   .d 3913 to 4617 790 to 98   AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 693/696
(99 %)
21 diff
(97.0 %id)
R09007 liver and spleen .d 3935 to 4202 1 to 271       271/340
(79 %)
6 diff
(98.3 %id)
R09370 liver and spleen .d 3935 to 4339 1 to 409       409/409
(100 %)
13 diff
(96.9 %id)
BM971593 lung .d 4044 to 4617 591 to 19   AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 573/573
(100 %)
1 diff
(99.9 %id)
BF347205 anaplastic oligodendroglioma with 1p/19qloss, brain .d 4048 to 4618 1 to 562       562/579
(97 %)
11 diff
(98.2 %id)
TI_2194643800   .d 4107 to 4485 523 to 144       380/523
(72 %)
0 diff
(100 %id)
AW005399 anaplastic oligodendroglioma, brain .d 4150 to 4616 479 to 12   AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 468/468
(100 %)
12 diff
(97.5 %id)
TI_2194646323   .d 4161 to 4485 401 to 76       326/405
(80 %)
0 diff
(100 %id)
AI400273 pooled .d 4227 to 4614 397 to 10       388/397
(97 %)
0 diff
(100 %id)
AA868139   .d 4241 to 4616 391 to 16   AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 376/376
(100 %)
0 diff
(100 %id)
CB105338 Liver .d 4316 to 4617 1 to 302   AAA Possibly primed on the genome, locally A rich (18/19 A in genome downstream of last aligned base) 302/302
(100 %)
0 diff
(100 %id)
AI016413   .d 4384 to 4618 239 to 5   tiling clone,   235/239
(98 %)
0 diff
(100 %id)
BE905509 epithelioid carcinoma, Pancreas .e 1 to 791 1 to 781 V196C C197A P198Q S199A P200H ... tiling clone,   781/856
(91 %)
21 diff
(97.6 %id)
AL541352 placenta .f 1 to 798 1 to 796   tiling clone,   796/920
(86 %)
4 diff
(99.6 %id)
BX431399 placenta .f 622 to 1107 1 to 490   tiling clone,   490/547
(89 %)
38 diff
(93.1 %id)
BX431387 placenta .f 638 to 1096 18 to 476   tiling clone,   459/540
(85 %)
13 diff
(97.6 %id)
CN286525 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .g 1 to 734 14 to 748 H2Y V155R V156G L157A Y158V ... tiling clone,   736/748
(98 %)
10 diff
(98.7 %id)
BI758279 brain .h 1 to 801 1 to 806   tiling clone,   806/935
(86 %)
10 diff
(99.0 %id)
TI_57220872   .h 1 to 845 69 to 920 K43E H44T R45S G46R L47P ... tiling clone,   852/1003
(84 %)
22 diff
(97.9 %id)
BX280935 brain .h 67 to 510 1 to 444   tiling clone,   444/444
(100 %)
0 diff
(100 %id)
BQ708606 Spleen .i-u 1 to 603 1 to 612   tiling clone,   612/937
(65 %)
7 diff
(99.3 %id)
TI_59382198   .i-u 612 to 895 619 to 913   tiling clone,   598/811
(73 %)
48 diff
(94.1 %id)
AK091748 lung .j-u 1 to 2677 2 to 2685   tiling clone, available from FLJ,   2685/2685
(100 %)
9 diff
(99.7 %id)
DA581666 lung .j-u 1 to 543 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
BQ773107 Chondrosarcoma Cell line .j-u 381 to 1105 752 to 19   tiling clone, AAA   734/734
(100 %)
5 diff
(99.4 %id)
DA259517 caudate nucleus .j-u 775 to 1325 2 to 558   capped   557/557
(100 %)
3 diff
(99.5 %id)
AK021876 whole embryo, mainly head .j-u 858 to 2677 1 to 1820 exact tiling clone, available from FLJ,   1820/1820
(100 %)
2 diff
(99.9 %id)
AU119677 whole embryo, mainly head .j-u 859 to 1665 2 to 810   capped   809/811
(99 %)
6 diff
(99.3 %id)
AI042531 senescent fibroblast .j-u 1281 to 1697 1 to 417     Submitted on the opposite strand 417/417
(100 %)
4 diff
(99.1 %id)
AW296277   .j-u 1288 to 1655 14 to 381     Submitted on the opposite strand 368/381
(96 %)
6 diff
(98.5 %id)
BQ189443 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .j-u 1288 to 1707 419 to 1     Submitted on the opposite strand 419/439
(95 %)
1 diff
(99.8 %id)
CK299575 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .j-u 1288 to 1707 15 to 434     Submitted on the opposite strand 420/443
(94 %)
1 diff
(99.8 %id)
AI220297 pooled .j-u 1289 to 1697 1 to 409     Submitted on the opposite strand 409/409
(100 %)
1 diff
(99.8 %id)
AW005101 anaplastic oligodendroglioma, brain .j-u 1292 to 1825 1 to 534 Q8X tiling clone, Submitted on the opposite strand 534/534
(100 %)
0 diff
(100 %id)
AW886830 ovary .j-u 1954 to 2358 12 to 419       408/430
(94 %)
8 diff
(98.2 %id)
BU187105 epithelioid carcinoma, Pancreas .j-u 2011 to 2442 1 to 432       432/448
(96 %)
1 diff
(99.8 %id)
BG534267 lung .j-u 2074 to 2684 1 to 608       608/630
(96 %)
21 diff
(96.7 %id)
AU145957 whole embryo, mainly head .j-u 2103 to 2677 574 to 1       574/577
(99 %)
10 diff
(98.3 %id)
DB319218 lung .j-u 2127 to 2677 550 to 1       550/550
(100 %)
3 diff
(99.5 %id)
AW514065 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .j-u 2227 to 2682 456 to 1   tiling clone,   456/456
(100 %)
0 diff
(100 %id)
TI_2194643293   Gene SLC9A5, variant not shown         This clone was ignored    
BI548990 brain, hippocampus Gene SLC9A5, variant not shown         Suspected internal deletion, this clone was ignored    
TI_44166630   Gene SLC9A5, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI