To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene SLC5A1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
96 supporting clones for gene SLC5A1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DQ656053   .a 1 to 464 1 to 464   tiling clone,   464/464
(100 %)
0 diff
(100 %id)
NM_000343.3   .a 1 to 5061 1 to 5061 exact RefSeq,   5061/5061
(100 %)
0 diff
(100 %id)
DA429018 colon .a 20 to 572 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA429054 colon .a 20 to 569 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB225699 trachea .a 21 to 577 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB197479 trachea .a 23 to 592 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
BP270548 small intestine .a 47 to 628 1 to 582       582/583
(99 %)
3 diff
(99.5 %id)
DB218506 trachea .a 48 to 506 2 to 462   capped   461/461
(100 %)
3 diff
(99.4 %id)
DB199274 trachea .a 51 to 634 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DB213161 trachea .a 51 to 594 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DB215858 trachea .a 51 to 600 2 to 552   capped   551/551
(100 %)
3 diff
(99.5 %id)
DB222348 trachea .a 51 to 630 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DB227937 trachea .a 51 to 592 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DB231077 trachea .a 51 to 592 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB232658 trachea .a 51 to 594 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DB234422 trachea .a 51 to 521 2 to 474   capped   473/473
(100 %)
2 diff
(99.6 %id)
DR006208 Prostate .a 56 to 441 8 to 393       386/393
(98 %)
6 diff
(98.5 %id)
DA581716 lung .a 66 to 627 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB206503 trachea .a 81 to 646 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DB212583 trachea .a 81 to 646 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB214280 trachea .a 87 to 646 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DC348291 tongue, tumor tissue .a 88 to 657 1 to 570       570/570
(100 %)
0 diff
(100 %id)
DC417440 trachea .a 92 to 691 1 to 600       600/600
(100 %)
0 diff
(100 %id)
DB221090 trachea .a 93 to 648 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
BP417007 small intestine .a 94 to 680 1 to 588     Submitted on the opposite strand 588/588
(100 %)
1 diff
(99.9 %id)
AK312948 trachea .a 97 to 2245 1 to 2149 exact     2149/2149
(100 %)
0 diff
(100 %id)
DC417024 trachea .a 97 to 684 1 to 589       589/589
(100 %)
1 diff
(99.9 %id)
DC417510 trachea .a 97 to 676 1 to 580       580/580
(100 %)
0 diff
(100 %id)
DB237716 trachea .a 98 to 568 2 to 472   capped   471/471
(100 %)
1 diff
(99.8 %id)
DC416785 trachea .a 99 to 655 1 to 557       557/557
(100 %)
0 diff
(100 %id)
BU584595 seminal vesicle .a 106 to 671 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
DC419048 trachea .a 150 to 686 1 to 537       537/537
(100 %)
3 diff
(99.5 %id)
BU584759 sm intestine .a 179 to 746 573 to 8       566/573
(98 %)
1 diff
(99.9 %id)
CR456579   .a 201 to 2320 1 to 2120 exact     2120/2120
(100 %)
0 diff
(100 %id)
BX482441   .a 222 to 611 1 to 390       390/390
(100 %)
5 diff
(98.8 %id)
DC414014 trachea .a 228 to 808 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BP270550 small intestine .a 231 to 813 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
DC388538 small intestine .a 231 to 809 1 to 584       580/584
(99 %)
6 diff
(99.0 %id)
DC388189 small intestine .a 232 to 769 1 to 538       538/538
(100 %)
0 diff
(100 %id)
BC139838 Clones donated by WTSI .a 239 to 2245 8 to 2014 exact     2007/2029
(98 %)
7 diff
(99.7 %id)
BC139839 Clones donated by WTSI .a 239 to 2242 8 to 2011       2004/2026
(98 %)
7 diff
(99.7 %id)
CU013464 Synthetic constructs .a 239 to 2242 8 to 2011       2004/2026
(98 %)
7 diff
(99.7 %id)
CU013176 Synthetic constructs .a 239 to 2245 8 to 2014 exact     2007/2029
(98 %)
7 diff
(99.7 %id)
M24847   .a 241 to 2690 1 to 2449 exact tiling clone,   2449/2449
(100 %)
2 diff
(100.0 %id)
AU100445   .a 246 to 504 41 to 298       258/298
(86 %)
6 diff
(98.0 %id)
BX487722   .a 457 to 1060 7 to 610       604/610
(99 %)
8 diff
(98.7 %id)
BX483563   .a 463 to 1262 1 to 801       801/801
(100 %)
3 diff
(99.7 %id)
DB224975 trachea .a 877 to 1459 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
BP270090 small intestine .a 1279 to 1862 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
CU447960 epidermis .a 1362 to 2021 24 to 683       660/690
(95 %)
11 diff
(98.5 %id)
BX503206 Liver .a 1460 to 1942 1 to 484       484/484
(100 %)
2 diff
(99.6 %id)
DA561966 heart .a 1522 to 2087 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
CU444329 epidermis .a 1550 to 2307 772 to 15     Submitted on the opposite strand 758/772
(98 %)
0 diff
(100 %id)
W95803 heart .a 1929 to 2398 1 to 470       470/472
(99 %)
1 diff
(99.8 %id)
BX106912 heart .a 1930 to 2394 1 to 465   AAA   465/465
(100 %)
0 diff
(100 %id)
AW084574 colon, colonic mucosa from 3 patients with Crohn'sdisease .a 1966 to 2376 413 to 3       411/413
(99 %)
0 diff
(100 %id)
AA639744 colon, colon tumor RER+ .a 2061 to 2398 341 to 4       338/341
(99 %)
0 diff
(100 %id)
AI628117 Kidney .a 2120 to 2402 284 to 2       283/284
(99 %)
0 diff
(100 %id)
BF114994 Kidney .a 2120 to 2398 284 to 6       279/284
(98 %)
0 diff
(100 %id)
AI078794 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2215 to 2694 482 to 3   tiling clone,   480/482
(99 %)
0 diff
(100 %id)
N83538   .a 2244 to 2464 1 to 217       217/218
(99 %)
6 diff
(97.3 %id)
AA669064 lung .a 2527 to 3013 486 to 1       486/486
(100 %)
8 diff
(98.4 %id)
AI376528 pooled .a 2562 to 3043 484 to 3       482/484
(99 %)
0 diff
(100 %id)
DA562836 heart .a 2642 to 3207 2 to 567   tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
BX113277 colon, colon tumor, RER+ .a 2643 to 3042 1 to 400   AAA   400/400
(100 %)
0 diff
(100 %id)
AI889071 colon, colon tumor, RER+ .a 2676 to 3043 368 to 1       368/368
(100 %)
2 diff
(99.5 %id)
AI274308 adenocarcinoma, colon .a 2773 to 3085 405 to 93   AAA   313/383
(81 %)
0 diff
(100 %id)
AI867263 colon, colon tumor, RER+ .a 2773 to 3043 271 to 1       271/275
(98 %)
5 diff
(98.2 %id)
AA433832   .a 3053 to 3500 1 to 449   tiling clone,   449/449
(100 %)
1 diff
(99.8 %id)
AL045567 testis .a 3369 to 3897 1 to 559   tiling clone,   559/699
(79 %)
6 diff
(99.2 %id)
TI_149302165   .a 4190 to 5054 922 to 77   tiling clone, AAA   846/984
(85 %)
24 diff
(97.6 %id)
BG950267 colon .a 4265 to 4480 1 to 218   tiling clone,   218/228
(95 %)
8 diff
(96.5 %id)
H43346 breast .a 4270 to 4680 1 to 417   tiling clone,   417/417
(100 %)
14 diff
(96.7 %id)
AA248302   .a 4272 to 4436 1 to 164       164/164
(100 %)
7 diff
(95.8 %id)
BE814446 breast_normal .a 4356 to 4713 1 to 362       362/363
(99 %)
24 diff
(93.4 %id)
AA095182   .a 4364 to 4754 1 to 380       380/380
(100 %)
18 diff
(95.3 %id)
BM980416 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 4416 to 5054 655 to 19   AAA   637/637
(100 %)
2 diff
(99.7 %id)
BE501461 Kidney .a 4524 to 5054 531 to 1   tiling clone,   531/531
(100 %)
0 diff
(100 %id)
BF197504 Kidney .a 4547 to 5054 509 to 2       508/509
(99 %)
0 diff
(100 %id)
AW083100 colon, moderately differentiated adenocarcinoma .a 4583 to 5054 472 to 1       472/472
(100 %)
1 diff
(99.8 %id)
AI206576 lung .a 4631 to 5053 423 to 1       423/423
(100 %)
0 diff
(100 %id)
AW772378 Kidney .a 4660 to 5054 395 to 1       395/395
(100 %)
1 diff
(99.8 %id)
H43308 breast .a 4729 to 5030 302 to 1       302/302
(100 %)
0 diff
(100 %id)
AL599996   .b 1 to 371 1 to 370       370/370
(100 %)
4 diff
(99.0 %id)
NR_033411.1   .b 1 to 4779 1 to 4779 exact RefSeq, tiling clone,   4779/4779
(100 %)
0 diff
(100 %id)
R57161   .b 18 to 221 1 to 203       203/203
(100 %)
6 diff
(97.1 %id)
AK316184 heart .b 22 to 2109 1 to 2088 K571R     2088/2088
(100 %)
4 diff
(99.9 %id)
DC356530 heart .b 22 to 577 1 to 556       556/556
(100 %)
2 diff
(99.7 %id)
AK297665 heart .b 27 to 2013 1 to 1987 exact     1987/1987
(100 %)
0 diff
(100 %id)
AL693702   .b 27 to 208 1 to 182       182/182
(100 %)
0 diff
(100 %id)
DC354288 heart .b 27 to 587 1 to 561       561/561
(100 %)
0 diff
(100 %id)
BG742097 skin .c 1 to 801 1 to 798   tiling clone,   798/798
(100 %)
3 diff
(99.7 %id)
DA952323 Spleen .d 1 to 567 2 to 568 exact tiling clone, capped   567/567
(100 %)
1 diff
(99.9 %id)
DA926923 small intestine .e 1 to 577 2 to 578 exact tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
BP276253 Kidney Gene SLC5A1, variant not shown         Suspected internal deletion, this clone was ignored    
DA922216 small intestine Gene SLC5A1, variant not shown       capped This clone was ignored    
DB331968 small intestine Gene SLC5A1, variant not shown         This clone was ignored    
DB237342 trachea Gene SLC5A1, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI