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Gene SLC4A1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
122 supporting clones for gene SLC4A1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AL597316   .a 1 to 319 1 to 313       313/313
(100 %)
9 diff
(97.2 %id)
X12609 blood .a 1 to 3475 1 to 3475 K56E tiling clone,   3475/3475
(100 %)
2 diff
(100.0 %id)
AL597683   .a 2 to 392 1 to 391       391/391
(100 %)
3 diff
(99.3 %id)
NM_000342.3   .a 2 to 4954 1 to 4953 exact RefSeq,   4953/4953
(100 %)
0 diff
(100 %id)
BX427713 fetal liver, Liver .a 9 to 762 1 to 759       759/843
(90 %)
21 diff
(97.6 %id)
BX464289 fetal liver, Liver .a 9 to 903 1 to 893       893/893
(100 %)
2 diff
(99.8 %id)
AL532146 brain, fetal liver, Liver, neuroblastoma cells .a 12 to 882 1 to 870       870/870
(100 %)
1 diff
(99.9 %id)
BX463136 fetal liver, Liver .a 21 to 1084 1 to 1056       1056/1105
(95 %)
21 diff
(98.1 %id)
BX444097 fetal liver, Liver .a 23 to 1003 1 to 979       660/989
(66 %)
47 diff
(95.3 %id)
DN998687 bone marrow .a 25 to 635 1 to 607       607/616
(98 %)
8 diff
(98.8 %id)
M27819   .a 37 to 3672 1 to 3635 exact tiling clone,   3635/3637
(99 %)
11 diff
(99.7 %id)
TI_927043427   .a 58 to 1196 36 to 1171       1136/1252
(90 %)
17 diff
(98.7 %id)
TI_927043434   .a 58 to 1166 34 to 1129       1096/1210
(90 %)
34 diff
(97.2 %id)
BC101570 Brain, cerebellum, PCR rescued clones .a 65 to 2933 1 to 2869 exact     2869/2869
(100 %)
0 diff
(100 %id)
TI_927043440   .a 65 to 1145 51 to 1140     Submitted on the opposite strand 1090/1142
(95 %)
22 diff
(98.1 %id)
BC101574 Brain, cerebellum, PCR rescued clones .a 69 to 2927 1 to 2859 exact     2859/2859
(100 %)
0 diff
(100 %id)
TI_927043447   .a 72 to 1209 68 to 1199     Submitted on the opposite strand 1132/1272
(88 %)
27 diff
(97.9 %id)
AL597709   .a 72 to 334 1 to 263       263/263
(100 %)
1 diff
(99.7 %id)
DQ419529   .a 83 to 2972 1 to 2890 D38A Q759H     2890/2890
(100 %)
3 diff
(99.9 %id)
BC096106 PCR rescued clones .a 89 to 3198 1 to 3110 exact     3110/3110
(100 %)
1 diff
(100.0 %id)
BC096107 PCR rescued clones .a 89 to 3198 1 to 3110 exact tiling clone,   3110/3110
(100 %)
0 diff
(100 %id)
BC099628 PCR rescued clones .a 89 to 3198 1 to 3110 P27H     3110/3110
(100 %)
1 diff
(100.0 %id)
BC099629 PCR rescued clones .a 89 to 3198 1 to 3110 exact     3110/3110
(100 %)
0 diff
(100 %id)
BF901814 marrow .a 177 to 469 307 to 21     Submitted on the opposite strand 287/347
(82 %)
4 diff
(98.9 %id)
BX433325 fetal liver, Liver .a 254 to 1176 926 to 5       922/931
(99 %)
15 diff
(98.4 %id)
TI_927044144   .a 419 to 1577 1 to 1164       1164/1230
(94 %)
25 diff
(98.0 %id)
TI_927044236   .a 420 to 1529 1 to 1104       1104/1250
(88 %)
16 diff
(98.8 %id)
TI_927044229   .a 421 to 1581 1 to 1156       1156/1274
(90 %)
17 diff
(98.7 %id)
TI_927044137   .a 427 to 1581 10 to 1172       1163/1248
(93 %)
27 diff
(97.9 %id)
BX431859 fetal liver, Liver .a 757 to 1626 1 to 872       872/877
(99 %)
10 diff
(98.9 %id)
CD608194   .a 772 to 1550 18 to 794       777/794
(97 %)
10 diff
(98.8 %id)
CD608196   .a 772 to 1522 16 to 766       751/766
(98 %)
16 diff
(98.0 %id)
BP231825 muscle .a 779 to 1358 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
TI_927044230   .a 822 to 2034 1 to 1202       1202/1258
(95 %)
24 diff
(98.1 %id)
TI_927044145   .a 824 to 1946 1 to 1108       1108/1188
(93 %)
25 diff
(97.9 %id)
TI_927044237   .a 824 to 2080 3 to 1247       1245/1255
(99 %)
41 diff
(96.8 %id)
TI_927044138   .a 832 to 1951 11 to 1128       1118/1208
(92 %)
18 diff
(98.6 %id)
T77250 liver and spleen .a 956 to 1263 1 to 308       308/308
(100 %)
8 diff
(97.5 %id)
AM919470 blood .a 1212 to 2076 1 to 865       865/865
(100 %)
1 diff
(99.9 %id)
TI_927044139   .a 1235 to 2369 1 to 1147       1147/1256
(91 %)
26 diff
(98.0 %id)
TI_927044224   .a 1241 to 2458 1 to 1219       1219/1279
(95 %)
24 diff
(98.2 %id)
TI_927044231   .a 1246 to 2464 9 to 1221       1213/1272
(95 %)
30 diff
(97.7 %id)
BX101830 liver and spleen .a 1289 to 2034 27 to 772       746/772
(96 %)
7 diff
(99.1 %id)
T86803 liver and spleen .a 1298 to 1658 1 to 366       366/448
(81 %)
17 diff
(96.3 %id)
BX443989 fetal liver, Liver .a 1374 to 2219 1 to 846       846/846
(100 %)
1 diff
(99.9 %id)
CD608195   .a 1509 to 1916 407 to 1       407/407
(100 %)
2 diff
(99.6 %id)
CD608197   .a 1509 to 1923 415 to 1       415/415
(100 %)
0 diff
(100 %id)
T77465 liver and spleen .a 1581 to 1678 98 to 1       98/104
(94 %)
2 diff
(98.1 %id)
TI_927045391   .a 1598 to 2712 1124 to 13       1112/1230
(90 %)
10 diff
(99.2 %id)
TI_927044232   .a 1617 to 2701 1 to 1085       1085/1274
(85 %)
8 diff
(99.4 %id)
TI_927044225   .a 1625 to 2813 10 to 1194       1185/1276
(92 %)
21 diff
(98.4 %id)
TI_927044140   .a 1629 to 2795 12 to 1178       1167/1244
(93 %)
21 diff
(98.4 %id)
TI_927045384   .a 1664 to 2716 1062 to 10       1053/1215
(86 %)
9 diff
(99.3 %id)
AF147201 lung .a 1775 to 2159 390 to 12       381/393
(96 %)
6 diff
(98.5 %id)
AA034081 liver and spleen .a 1785 to 2077 1 to 299       295/303
(97 %)
9 diff
(97.1 %id)
TI_927043426   .a 1832 to 2937 1152 to 53     Submitted on the opposite strand 1100/1236
(88 %)
12 diff
(99.1 %id)
TI_927043448   .a 1859 to 2933 1130 to 62       1069/1213
(88 %)
17 diff
(98.6 %id)
TI_927043433   .a 1875 to 2937 1099 to 50     Submitted on the opposite strand 1050/1212
(86 %)
16 diff
(98.7 %id)
TI_927043441   .a 1923 to 2933 1075 to 56       1020/1075
(94 %)
25 diff
(97.7 %id)
T86708 liver and spleen .a 2108 to 2351 245 to 2       244/248
(98 %)
6 diff
(97.6 %id)
BX431851 fetal liver, Liver .a 2115 to 2804 1 to 691       691/857
(80 %)
14 diff
(98.4 %id)
N58147 liver and spleen .a 2173 to 2754 591 to 14       578/591
(97 %)
15 diff
(97.5 %id)
TI_927044226   .a 2208 to 2937 20 to 749       732/1267
(57 %)
9 diff
(99.3 %id)
BG015453 placenta_normal .a 2241 to 2612 378 to 7       372/378
(98 %)
2 diff
(99.5 %id)
AI040499 liver and spleen .a 2245 to 2721 480 to 8       473/480
(98 %)
16 diff
(96.7 %id)
BX422204 fetal liver, Liver .a 2655 to 3699 1 to 1031   tiling clone,   1031/1035
(99 %)
22 diff
(97.9 %id)
W02267 liver and spleen .a 3248 to 3525 12 to 292       281/409
(68 %)
9 diff
(97.8 %id)
W01600 liver and spleen .a 3257 to 3554 1 to 307       307/307
(100 %)
15 diff
(95.2 %id)
T28741 heart .a 3258 to 3587 1 to 330       330/332
(99 %)
6 diff
(98.2 %id)
N91316 liver and spleen .a 3319 to 3738 1 to 435   tiling clone,   435/485
(89 %)
22 diff
(95.5 %id)
AI061580 Liver .a 3884 to 4466 1 to 581   tiling clone,   581/581
(100 %)
4 diff
(99.4 %id)
CA427516 Bone, Subchondral Bone .a 3908 to 4484 577 to 1       577/577
(100 %)
1 diff
(99.9 %id)
AI207465 Liver .a 3910 to 4466 1 to 557   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 557/557
(100 %)
0 diff
(100 %id)
CA427937 Bone, Subchondral Bone .a 3915 to 4484 570 to 1       570/570
(100 %)
1 diff
(99.9 %id)
AW950627   .a 3930 to 4498 1 to 570       570/622
(91 %)
18 diff
(97.2 %id)
BX426946 fetal liver, Liver .a 3931 to 4884 1 to 949       949/1003
(94 %)
60 diff
(94.1 %id)
AJ710151 heart .a 3944 to 4182 239 to 1     Submitted on the opposite strand 239/239
(100 %)
1 diff
(99.6 %id)
T79673 liver and spleen .a 3993 to 4345 1 to 362       362/384
(94 %)
11 diff
(97.2 %id)
AI311647 2 pooled tumors (clear cell type), Kidney .a 4014 to 4482 469 to 1   tiling clone,   469/469
(100 %)
0 diff
(100 %id)
BU656496 blood .a 4039 to 4462 2 to 425       424/425
(99 %)
10 diff
(97.7 %id)
N68472 liver and spleen .a 4050 to 4469 425 to 1       425/434
(97 %)
10 diff
(97.7 %id)
AW468048 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .a 4054 to 4478 425 to 1       425/425
(100 %)
1 diff
(99.8 %id)
N71291 liver and spleen .a 4063 to 4466 406 to 1       406/413
(98 %)
2 diff
(99.6 %id)
N72717 liver and spleen .a 4152 to 4474 324 to 1       324/328
(98 %)
4 diff
(98.8 %id)
H72530 liver and spleen .a 4260 to 4574 1 to 318   fully sequenced,   318/318
(100 %)
5 diff
(98.5 %id)
W52505 heart .a 4327 to 4720 1 to 398   fully sequenced, Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 398/398
(100 %)
6 diff
(98.5 %id)
BX431926 fetal liver, Liver .a 4388 to 4953 5 to 572       568/572
(99 %)
6 diff
(99.0 %id)
BX431925 fetal liver, Liver .a 4390 to 4954 12 to 578       567/578
(98 %)
6 diff
(99.0 %id)
T52103 fetal spleen, Spleen .a 4401 to 4700 1 to 308       308/373
(82 %)
13 diff
(96.6 %id)
AA007636 liver and spleen .a 4440 to 4954 516 to 3   tiling clone,   514/516
(99 %)
0 diff
(100 %id)
BX436197 fetal liver, Liver .a 4479 to 4949 470 to 1       757/892
(84 %)
54 diff
(94.0 %id)
BX436190 fetal liver, Liver .a 4480 to 4947 466 to 1       466/476
(97 %)
23 diff
(95.2 %id)
AI241458 liver and spleen .a 4483 to 4953 487 to 18   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 470/470
(100 %)
17 diff
(96.4 %id)
AA677171 liver and spleen .a 4488 to 4950 461 to 1       461/461
(100 %)
3 diff
(99.4 %id)
D53710   .a 4489 to 4883 1 to 389       389/391
(99 %)
10 diff
(97.5 %id)
D81538 brain .a 4489 to 4819 1 to 335       335/335
(100 %)
4 diff
(98.9 %id)
BX456166 fetal liver, Liver .a 4491 to 4946 457 to 5       453/938
(48 %)
0 diff
(100 %id)
AI056077   .a 4495 to 4954 463 to 4       460/463
(99 %)
0 diff
(100 %id)
T51397 fetal spleen, Spleen .a 4497 to 4764 1 to 271       271/271
(100 %)
3 diff
(98.9 %id)
R29226   .a 4499 to 4609 1 to 110       110/110
(100 %)
1 diff
(99.1 %id)
R89603 liver and spleen .a 4500 to 4932 441 to 1       441/441
(100 %)
12 diff
(97.3 %id)
AA877113 Kidney .a 4512 to 4952 441 to 1       441/441
(100 %)
0 diff
(100 %id)
AA699556 liver and spleen .a 4523 to 4954 432 to 1       432/432
(100 %)
0 diff
(100 %id)
H49711 liver and spleen .a 4524 to 4856 1 to 333       333/333
(100 %)
0 diff
(100 %id)
AI074667 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4528 to 4909 381 to 1       381/381
(100 %)
2 diff
(99.5 %id)
H72929 liver and spleen .a 4544 to 4953 421 to 1   fully sequenced,   421/421
(100 %)
12 diff
(97.2 %id)
AJ706489 bone marrow .a 4562 to 4953 1 to 392       392/392
(100 %)
5 diff
(98.8 %id)
AI241381 liver and spleen .a 4597 to 4953 370 to 14   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 357/357
(100 %)
0 diff
(100 %id)
R87664 liver and spleen .a 4615 to 4919 313 to 1       313/365
(85 %)
1 diff
(99.8 %id)
AW294523   .a 4665 to 4953 306 to 18   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 289/302
(95 %)
0 diff
(100 %id)
W52691 heart .a 4690 to 4953 278 to 14   fully sequenced, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 265/265
(100 %)
1 diff
(99.7 %id)
AI470773 Kidney .a 4710 to 4954 245 to 1       245/245
(100 %)
1 diff
(99.6 %id)
AI498631 Kidney .a 4715 to 4953 278 to 40   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 239/239
(100 %)
6 diff
(97.5 %id)
AA033839 heart .a 4734 to 4959 237 to 12   tiling clone, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 226/226
(100 %)
1 diff
(99.6 %id)
T58047 fetal spleen, Spleen .a 4782 to 4952 171 to 1       171/171
(100 %)
1 diff
(99.5 %id)
C02408   .a 4798 to 4953 1 to 157       157/157
(100 %)
1 diff
(99.4 %id)
CR599802 fetal liver .b 1 to 1922 1 to 1922   tiling clone,   1922/1922
(100 %)
0 diff
(100 %id)
BX445352 fetal liver, Liver .b 988 to 1923 939 to 6       934/939
(99 %)
3 diff
(99.7 %id)
AL532145 brain, fetal liver, Liver, neuroblastoma cells .b 1014 to 1922 905 to 1       512/905
(56 %)
28 diff
(97.0 %id)
BX427712 fetal liver, Liver .b 1236 to 1880 653 to 1       653/653
(100 %)
38 diff
(94.2 %id)
R06905 liver and spleen .b 1634 to 1926 299 to 1   tiling clone,   299/299
(100 %)
12 diff
(96.0 %id)
R10166 liver and spleen .c-u 1 to 316 1 to 323   tiling clone,   323/443
(72 %)
8 diff
(98.2 %id)
BX093988 liver and spleen .c-u 62 to 766 16 to 722   tiling clone,   707/722
(97 %)
6 diff
(99.2 %id)
CR736109 liver and spleen .c-u 68 to 766 1 to 700       700/700
(100 %)
3 diff
(99.6 %id)
T86013 liver and spleen .c-u 70 to 362 1 to 299       299/304
(98 %)
7 diff
(97.7 %id)
T91230 liver and spleen .c-u 569 to 927 364 to 3       362/410
(88 %)
0 diff
(100 %id)
R10069 liver and spleen .c-u 604 to 922 333 to 7   tiling clone,   327/337
(97 %)
0 diff
(100 %id)
AA302956 Spleen .c-u 716 to 1074 359 to 1   tiling clone,   359/359
(100 %)
1 diff
(99.8 %id)
S68680 Kidney .d 1 to 462 1 to 462 exact tiling clone,   462/462
(100 %)
0 diff
(100 %id)
AL597201   .e 1 to 461 1 to 463 T39X S40X T44Y H45P K46Q ... tiling clone,   463/463
(100 %)
3 diff
(99.4 %id)
T81770 liver and spleen .f-u 1 to 328 326 to 1 P7T T8H G9W L10A A11C ... tiling clone,   326/333
(97 %)
10 diff
(97.0 %id)
BG942026 blood Gene SLC4A1, variant not shown         Suspected internal deletion, this clone was ignored    
BU659182 blood Gene SLC4A1, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
X77737   Gene SLC4A1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e, .f-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI