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Gene SLC38A4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
125 supporting clones for gene SLC38A4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AU118969 whole embryo, mainly head .a 1 to 920 2 to 918   tiling clone, capped   917/917
(100 %)
14 diff
(98.5 %id)
AU145412 whole embryo, mainly head .a 3273 to 3858 587 to 1   tiling clone,   587/587
(100 %)
14 diff
(97.7 %id)
AF305814   .b 33 to 3970 11 to 3949 exact tiling clone, AAA   3939/3949
(99 %)
4 diff
(99.9 %id)
NM_018018.4   .b 83 to 3970 96 to 3983 exact RefSeq, AAA   3983/3983
(100 %)
2 diff
(100.0 %id)
BC069819 PCR rescued clones .b 127 to 2173 1 to 2047 exact available from MGC,   2047/2047
(100 %)
3 diff
(99.9 %id)
DA045976 bladder .b 196 to 766 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DB188859 liver, tumor tissue .b 196 to 767 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DB188495 liver, tumor tissue .b 227 to 787 2 to 563   capped   562/574
(97 %)
3 diff
(99.5 %id)
DB139964 thymus .c -11 to 549 2 to 562   tiling clone, capped   561/561
(100 %)
0 diff
(100 %id)
DR003840 Liver .c 1 to 754 3 to 756       756/756
(100 %)
4 diff
(99.5 %id)
AF193836   .c 8 to 2267 1 to 2261 exact tiling clone,   2261/2261
(100 %)
2 diff
(100.0 %id)
BX472148   .c 20 to 403 1 to 384       384/384
(100 %)
1 diff
(99.8 %id)
AK291168   .c 83 to 2523 97 to 2537 exact     2537/2537
(100 %)
2 diff
(100.0 %id)
NM_001143824.1   .c 83 to 3778 96 to 3791 exact RefSeq, AAA   3791/3791
(100 %)
2 diff
(100.0 %id)
DA743947   .c 83 to 558 97 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BC101827 Liver, PCR rescued clones .c 150 to 1935 1 to 1785 exact     1785/1785
(100 %)
2 diff
(99.9 %id)
TI_927044874   .c 150 to 1187 46 to 1074       1029/1208
(85 %)
9 diff
(99.3 %id)
TI_927044878   .c 150 to 1185 47 to 1077       1031/1193
(86 %)
7 diff
(99.5 %id)
BC104913 Liver, PCR rescued clones .c 152 to 1935 1 to 1784 exact     1784/1784
(100 %)
1 diff
(100.0 %id)
TI_1241109633   .c 152 to 1261 63 to 1179     Submitted on the opposite strand 1117/1312
(85 %)
20 diff
(98.5 %id)
TI_1241113373   .c 152 to 1267 76 to 1194     Submitted on the opposite strand 1119/1339
(83 %)
22 diff
(98.4 %id)
TI_927047485   .c 158 to 1099 956 to 5       952/961
(99 %)
15 diff
(98.5 %id)
AB055003   .c 164 to 3778 1 to 3615 exact tiling clone, AAA   3615/3615
(100 %)
3 diff
(100.0 %id)
TI_1948228410   .c 188 to 1186 133 to 1135       1003/1325
(75 %)
51 diff
(96.2 %id)
TI_1948228411   .c 188 to 1187 130 to 1131       1002/1307
(76 %)
29 diff
(97.8 %id)
TI_1948228699   .c 188 to 903 133 to 848       716/1429
(50 %)
4 diff
(99.8 %id)
TI_1948228700   .c 188 to 1068 120 to 1014       895/1351
(66 %)
30 diff
(97.8 %id)
TI_1948229004   .c 188 to 1183 131 to 1126       996/1375
(72 %)
40 diff
(97.1 %id)
TI_1948229005   .c 188 to 1188 121 to 1123       1003/1278
(78 %)
48 diff
(96.3 %id)
TI_1948229311   .c 188 to 1073 131 to 1020       890/1406
(63 %)
22 diff
(98.5 %id)
TI_1948229312   .c 188 to 1265 126 to 1211       1086/1294
(83 %)
49 diff
(96.3 %id)
EL736302 mixed .c 195 to 769 1 to 574       574/609
(94 %)
3 diff
(99.6 %id)
TI_1948231404   .c 197 to 833 131 to 774       644/1353
(47 %)
53 diff
(96.1 %id)
TI_1241111857   .c 336 to 1105 779 to 2       778/841
(92 %)
27 diff
(96.8 %id)
TI_1241110903   .c 434 to 1068 641 to 8       634/643
(98 %)
6 diff
(99.1 %id)
TI_927045928   .c 566 to 1723 4 to 1147       1147/1220
(94 %)
22 diff
(98.2 %id)
DB181416 liver, tumor tissue .c 566 to 1131 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BX494249 Liver .c 585 to 1127 1 to 544       544/544
(100 %)
1 diff
(99.9 %id)
T72966 Liver .c 693 to 1028 1 to 346       346/358
(96 %)
11 diff
(97.0 %id)
TI_1241112989   .c 711 to 1946 1301 to 59     Submitted on the opposite strand 1243/1304
(95 %)
41 diff
(96.9 %id)
BX497211 Liver .c 765 to 1151 1 to 387       387/387
(100 %)
1 diff
(99.8 %id)
TI_927044882   .c 905 to 1935 1103 to 72       1032/1190
(86 %)
16 diff
(98.7 %id)
TI_1948228413   .c 911 to 1840 1047 to 120       928/1352
(68 %)
13 diff
(99.1 %id)
TI_1948228702   .c 911 to 1840 1056 to 117       940/1413
(66 %)
30 diff
(97.9 %id)
TI_1948229007   .c 911 to 1840 1048 to 120       929/1365
(68 %)
12 diff
(99.2 %id)
TI_1948229314   .c 911 to 1841 1048 to 117       932/1377
(67 %)
19 diff
(98.7 %id)
TI_1241109631   .c 915 to 1946 1065 to 44     Submitted on the opposite strand 1022/1177
(86 %)
9 diff
(99.3 %id)
TI_1948229006   .c 983 to 1840 979 to 120       860/1177
(73 %)
21 diff
(98.3 %id)
TI_1948229313   .c 1048 to 1841 914 to 116       799/1191
(67 %)
13 diff
(99.0 %id)
BX951458   .c 1195 to 1849 1 to 656       656/656
(100 %)
3 diff
(99.6 %id)
BX283789 Liver .c 1270 to 1627 1 to 358       358/358
(100 %)
1 diff
(99.8 %id)
BG617472 Liver .c 1270 to 1979 1 to 706       706/719
(98 %)
13 diff
(98.2 %id)
AV661483 corresponding non cancerous liver tissue .c 1401 to 1725 1 to 325     Submitted on the opposite strand 325/325
(100 %)
13 diff
(96.0 %id)
BQ051010 leiomyosarcoma, uterus .c 1442 to 2152 9 to 724       716/1106
(64 %)
19 diff
(98.3 %id)
AV684258 hepatocellular carcinoma .c 1477 to 1869 1 to 389       389/405
(96 %)
3 diff
(99.3 %id)
DA045402 bladder .c 1504 to 2071 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DB188999 liver, tumor tissue .c 1665 to 1958 2 to 295   capped   294/294
(100 %)
0 diff
(100 %id)
BJ994265 hepatoblastoma .c 1683 to 2168 1 to 486       486/486
(100 %)
0 diff
(100 %id)
AA366947 Pancreas .c 1738 to 2057 1 to 323       323/323
(100 %)
3 diff
(99.1 %id)
T72187 Liver .c 3406 to 3754 357 to 1       357/370
(96 %)
16 diff
(95.7 %id)
DB131145 thymus .d 1 to 547 2 to 549   tiling clone, capped   548/548
(100 %)
1 diff
(99.9 %id)
CD656731 Embryonic Stem cells .d 62 to 787 7 to 729 N162K I163H G164W A165S K174* tiling clone,   723/818
(88 %)
8 diff
(99.1 %id)
AV649867 corresponding non cancerous liver tissue .e 1 to 425 1 to 425   tiling clone, Submitted on the opposite strand 425/425
(100 %)
0 diff
(100 %id)
CA778277 Pancreas, Purified pancreatic islet .e 295 to 1087 18 to 810       793/810
(97 %)
0 diff
(100 %id)
CA778351 Pancreas, Purified pancreatic islet .e 298 to 1119 1 to 822   tiling clone,   822/822
(100 %)
0 diff
(100 %id)
BJ994627 hepatoblastoma .e 328 to 827 1 to 500       500/500
(100 %)
0 diff
(100 %id)
CA950937 Pancreas, Purified pancreatic islet .e 438 to 1043 1 to 606       606/606
(100 %)
2 diff
(99.7 %id)
BG568069 Liver .e 500 to 1246 1 to 749       749/749
(100 %)
2 diff
(99.8 %id)
BG565873 Liver .e 502 to 1194 1 to 693       693/696
(99 %)
5 diff
(99.3 %id)
AV653985 corresponding non cancerous liver tissue .e 717 to 1121 1 to 405     Submitted on the opposite strand 405/405
(100 %)
0 diff
(100 %id)
CB154705 Liver .e 717 to 1242 1 to 526       526/526
(100 %)
2 diff
(99.7 %id)
CB162716 Liver .e 729 to 1396 1 to 668   tiling clone,   668/668
(100 %)
1 diff
(99.9 %id)
CB164010 Liver .e 729 to 1390 1 to 662       662/662
(100 %)
1 diff
(99.9 %id)
CB155977 Liver .e 737 to 1314 1 to 581       581/582
(99 %)
4 diff
(99.4 %id)
AV660303 corresponding non cancerous liver tissue .e 889 to 1242 1 to 354     Submitted on the opposite strand 354/354
(100 %)
3 diff
(99.2 %id)
BG533486 Liver .e 995 to 1743 1 to 750       750/754
(99 %)
11 diff
(98.6 %id)
BG618592 Liver .e 999 to 1719 1 to 727       727/729
(99 %)
16 diff
(97.9 %id)
AV648032 corresponding non cancerous liver tissue .e 1004 to 1390 1 to 387     Submitted on the opposite strand 387/387
(100 %)
2 diff
(99.5 %id)
AV648120 corresponding non cancerous liver tissue .e 1004 to 1683 1 to 680     Submitted on the opposite strand 680/680
(100 %)
10 diff
(98.6 %id)
AV648215 corresponding non cancerous liver tissue .e 1004 to 1390 1 to 387     Submitted on the opposite strand 387/396
(97 %)
3 diff
(99.3 %id)
AV648278 corresponding non cancerous liver tissue .e 1004 to 1390 1 to 387     Submitted on the opposite strand 387/387
(100 %)
2 diff
(99.5 %id)
AV648354 corresponding non cancerous liver tissue .e 1004 to 1699 1 to 695     Submitted on the opposite strand 695/695
(100 %)
3 diff
(99.6 %id)
BX279750 bladder, transitional cell papilloma, cell line .e 1019 to 1504 1 to 486       486/486
(100 %)
2 diff
(99.6 %id)
CR746836 bladder, transitional cell papilloma, cell line .e 1019 to 1496 12 to 489       478/489
(97 %)
0 diff
(100 %id)
BG290858 bladder, transitional cell papilloma, cell line .e 1019 to 1749 1 to 729       729/734
(99 %)
7 diff
(99.1 %id)
T88862 liver and spleen .e 1044 to 1414 1 to 374       374/374
(100 %)
7 diff
(98.2 %id)
H55836 liver and spleen .e 1044 to 1396 1 to 355   fully sequenced,   355/355
(100 %)
2 diff
(99.5 %id)
BI715278 Pancreas, Purified pancreatic islet .e 1097 to 1646 10 to 559       550/559
(98 %)
0 diff
(100 %id)
BG616757 Liver .e 1116 to 1804 1 to 694       694/694
(100 %)
9 diff
(98.8 %id)
CB157504 Liver .e 1122 to 1702 1 to 581       581/581
(100 %)
8 diff
(98.7 %id)
BG618784 Liver .e 1162 to 1786 1 to 626   tiling clone,   626/626
(100 %)
8 diff
(98.8 %id)
BE971199 muscle (skeletal) .e 1249 to 1821 1 to 565       565/566
(99 %)
21 diff
(96.3 %id)
AA705032 liver and spleen .e 1269 to 1683 415 to 1       415/415
(100 %)
2 diff
(99.6 %id)
CA777992 Pancreas, Purified pancreatic islet .e 1336 to 1965 638 to 9       630/638
(98 %)
0 diff
(100 %id)
CA778057 Pancreas, Purified pancreatic islet .e 1361 to 1965 615 to 10       606/615
(98 %)
0 diff
(100 %id)
AV720522 corresponding non cancerous liver tissue .e 1366 to 1960 608 to 14     Submitted on the opposite strand 595/608
(97 %)
0 diff
(100 %id)
H55837 liver and spleen .e 1366 to 1619 259 to 1   fully sequenced,   259/259
(100 %)
9 diff
(96.6 %id)
AV719575 corresponding non cancerous liver tissue .e 1376 to 1963 588 to 1     Submitted on the opposite strand 588/588
(100 %)
2 diff
(99.7 %id)
EC487778 Prostate .e 1417 to 1523 1 to 107       107/114
(93 %)
4 diff
(96.5 %id)
CA950690 Pancreas, Purified pancreatic islet .e 1427 to 1967 541 to 1       541/541
(100 %)
2 diff
(99.7 %id)
BP393058 pancreatic islet .e 1468 to 1967 1 to 500   tiling clone, Submitted on the opposite strand 500/500
(100 %)
3 diff
(99.4 %id)
AV718703 corresponding non cancerous liver tissue .e 1488 to 1944 457 to 1     Submitted on the opposite strand 457/457
(100 %)
0 diff
(100 %id)
BI714727 Pancreas, Purified pancreatic islet .e 1491 to 1966 482 to 7       476/482
(98 %)
0 diff
(100 %id)
AI434618 Kidney .e 1494 to 1966 475 to 3       473/475
(99 %)
0 diff
(100 %id)
BE463522 Kidney .e 1501 to 1966 468 to 3       466/468
(99 %)
0 diff
(100 %id)
AI207547 Liver .e 1503 to 1965 487 to 25   AAA   463/463
(100 %)
0 diff
(100 %id)
AI536648 Kidney .e 1506 to 1967 462 to 1       462/462
(100 %)
1 diff
(99.8 %id)
AW772290 Kidney .e 1516 to 1967 452 to 1       452/452
(100 %)
0 diff
(100 %id)
BG413491 pooled .e 1547 to 1966 426 to 7       420/426
(98 %)
0 diff
(100 %id)
BG413507 pooled .e 1547 to 1966 426 to 7       420/426
(98 %)
0 diff
(100 %id)
N68679 liver and spleen .e 1584 to 1967 391 to 8       384/435
(88 %)
0 diff
(100 %id)
AI276746 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 1596 to 1965 381 to 12   AAA   370/370
(100 %)
10 diff
(97.3 %id)
AW204828   .e 1607 to 1967 376 to 16   AAA   361/361
(100 %)
0 diff
(100 %id)
CB068274 Pancreas, Purified pancreatic islet .e 1620 to 1966 347 to 1       347/347
(100 %)
0 diff
(100 %id)
AA995080 Kidney .e 1652 to 1965 314 to 1       314/320
(98 %)
0 diff
(100 %id)
T67491 Liver .e 1775 to 1942 169 to 1       169/169
(100 %)
5 diff
(97.1 %id)
AI521332 adenocarcinoma, Pancreas .e 1872 to 1965 120 to 27   AAA   94/96
(97 %)
2 diff
(98.0 %id)
CD652538 Embryonic Stem cells .f 1 to 695 7 to 699 I152L G153E A154L F155L V156F ... tiling clone,   769/823
(93 %)
11 diff
(98.7 %id)
AV651584 corresponding non cancerous liver tissue .g 1 to 379 1 to 379     Submitted on the opposite strand 379/379
(100 %)
5 diff
(98.7 %id)
AV651620 corresponding non cancerous liver tissue .g 1 to 373 1 to 373     Submitted on the opposite strand 373/373
(100 %)
5 diff
(98.7 %id)
AV646057 corresponding non cancerous liver tissue .g 2 to 380 1 to 379 exact tiling clone, Submitted on the opposite strand 379/379
(100 %)
4 diff
(99.0 %id)
AV646171 corresponding non cancerous liver tissue .g 5 to 367 32 to 394     Submitted on the opposite strand 363/394
(92 %)
0 diff
(100 %id)
AV646182 corresponding non cancerous liver tissue .g 5 to 376 18 to 389     Submitted on the opposite strand 372/389
(95 %)
0 diff
(100 %id)
AL700295 human skeletal muscle .h-u 1 to 519 1 to 520 Y11L L12S K13* tiling clone,   520/520
(100 %)
1 diff
(99.9 %id)
AA680367 liver and spleen .i-u 1 to 399 399 to 1 exact tiling clone,   399/399
(100 %)
0 diff
(100 %id)
AK001053 whole embryo, mainly head Gene SLC38A4, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AV648331 corresponding non cancerous liver tissue Gene SLC38A4, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV649505 corresponding non cancerous liver tissue Gene SLC38A4, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV649752 corresponding non cancerous liver tissue Gene SLC38A4, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C