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Gene SLC38A3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
126 supporting clones for gene SLC38A3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP362985 lung .a 1 to 579 1 to 580   tiling clone,   580/582
(99 %)
4 diff
(99.4 %id)
NM_006841.4   .a 14 to 2465 1 to 2452 exact RefSeq, AAA   2452/2452
(100 %)
0 diff
(100 %id)
DB183702 liver, tumor tissue .a 15 to 588 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA783050 brain .a 21 to 585 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA022075   .a 24 to 587 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA274759 corpus callosum .a 24 to 528 2 to 507   capped   506/509
(99 %)
4 diff
(99.3 %id)
AL711687 human skeletal muscle .a 25 to 496 1 to 472       472/472
(100 %)
1 diff
(99.8 %id)
AL713320 human skeletal muscle .a 25 to 589 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
BX284053 brain, frontal lobe .a 26 to 489 45 to 508       464/508
(91 %)
7 diff
(98.7 %id)
AU098981   .a 26 to 325 1 to 300       300/300
(100 %)
7 diff
(97.7 %id)
AK313461 corpus callosum .a 27 to 1669 1 to 1643 exact     1643/1643
(100 %)
1 diff
(100.0 %id)
DA042794 bladder .a 27 to 589 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA282261 corpus callosum .a 27 to 595 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA305243 hippocampus .a 27 to 601 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
BX537382 human retina .a 27 to 2465 1 to 2439 exact tiling clone, available from DKFZ, AAA   2439/2439
(100 %)
0 diff
(100 %id)
AL713471 human skeletal muscle .a 27 to 470 1 to 443       443/443
(100 %)
1 diff
(99.8 %id)
DA488128 brain .a 27 to 594 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA499338 brain .a 27 to 590 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB183365 liver, tumor tissue .a 27 to 574 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DB185464 liver, tumor tissue .a 27 to 594 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA283682 corpus callosum .a 28 to 598 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA328653 hippocampus .a 28 to 579 2 to 554   capped   553/553
(100 %)
3 diff
(99.5 %id)
BJ995332 hepatoblastoma .a 28 to 627 1 to 600       600/600
(100 %)
0 diff
(100 %id)
BP348735 brain .a 28 to 608 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP356989 mammary gland .a 28 to 608 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BC042875 Brain, Lung, Testis, adult, pooled whole .a 29 to 2462 1 to 2434 exact available from MGC, AAA   2434/2434
(100 %)
0 diff
(100 %id)
DA171079 amygdala .a 29 to 555 2 to 528   capped   527/527
(100 %)
2 diff
(99.7 %id)
DA201773 brain .a 29 to 609 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA258750 caudate nucleus .a 29 to 584 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA274442 corpus callosum .a 29 to 600 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
DA281992 corpus callosum .a 29 to 606 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA301105 hippocampus .a 29 to 586 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA338208 hippocampus .a 29 to 606 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA341240 substantia nigra .a 29 to 585 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA365431 subthalamic nucleus .a 29 to 578 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA487510 brain .a 29 to 583 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA528536 brain .a 29 to 626 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DA564405 heart .a 29 to 600 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA638657 Liver .a 29 to 517 2 to 491   capped   490/490
(100 %)
1 diff
(99.8 %id)
DA782105 brain .a 29 to 600 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DB175038 kidney, tumor tissue .a 29 to 572 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
DB181920 liver, tumor tissue .a 29 to 546 2 to 519   capped   518/518
(100 %)
1 diff
(99.9 %id)
DB182393 liver, tumor tissue .a 29 to 579 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB187037 liver, tumor tissue .a 29 to 594 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DB188339 liver, tumor tissue .a 29 to 595 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
AW163054 brain, frontal lobe .a 30 to 620 1 to 591       591/608
(97 %)
7 diff
(98.9 %id)
BI818629 pooled brain, lung, testis .a 30 to 758 1 to 728       728/728
(100 %)
14 diff
(98.1 %id)
TI_57196533   .a 31 to 758 29 to 755       727/755
(96 %)
17 diff
(97.8 %id)
DB188319 liver, tumor tissue .a 31 to 567 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
BP214336 corpus callosum .a 32 to 613 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DB187051 liver, tumor tissue .a 33 to 603 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
U49082   .a 39 to 2453 9 to 2423 exact     2415/2431
(99 %)
7 diff
(99.8 %id)
BQ072450 pooled lung and spleen .a 41 to 764 1 to 738       738/1079
(68 %)
33 diff
(97.0 %id)
AF244548 Liver .a 42 to 2462 1 to 2421 exact AAA   2421/2421
(100 %)
0 diff
(100 %id)
DR003858 Liver .a 44 to 675 1 to 632       632/632
(100 %)
7 diff
(98.9 %id)
BP214477 corpus callosum .a 45 to 624 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DB181804 liver, tumor tissue .a 46 to 620 2 to 576   capped   575/581
(98 %)
3 diff
(99.5 %id)
BQ636956 eye, retina .a 49 to 606 1 to 558       558/558
(100 %)
0 diff
(100 %id)
BQ638681 eye, retina .a 58 to 557 1 to 500       500/500
(100 %)
3 diff
(99.4 %id)
CR456970   .a 155 to 1668 1 to 1514       1514/1515
(99 %)
3 diff
(99.9 %id)
EL734263 mixed .a 155 to 840 1 to 684       684/684
(100 %)
2 diff
(99.8 %id)
DB187812 liver, tumor tissue .a 454 to 1026 8 to 580   capped   573/579
(98 %)
0 diff
(100 %id)
BQ638957 eye, retina .a 535 to 1088 65 to 618       554/618
(89 %)
6 diff
(99.1 %id)
AI817707 anaplastic oligodendroglioma, brain .a 548 to 989 470 to 30       441/470
(93 %)
0 diff
(100 %id)
AI885194 anaplastic oligodendroglioma, brain .a 556 to 989 463 to 30       434/463
(93 %)
1 diff
(99.8 %id)
T62102 Liver .a 611 to 731 1 to 121       121/121
(100 %)
0 diff
(100 %id)
BM931412 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 703 to 1471 2 to 764       763/780
(97 %)
12 diff
(98.5 %id)
BM930410 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 703 to 1205 2 to 504       503/504
(99 %)
2 diff
(99.7 %id)
TI_151761072   .a 703 to 1221 565 to 48       518/1080
(47 %)
1 diff
(100.0 %id)
DA777117 brain .a 848 to 1413 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BQ637389 eye, retina .a 853 to 1498 1 to 646       646/646
(100 %)
0 diff
(100 %id)
BQ636672 eye, retina .a 929 to 1560 1 to 632       632/632
(100 %)
0 diff
(100 %id)
T89478 liver and spleen .a 1455 to 1807 1 to 357       357/357
(100 %)
9 diff
(97.5 %id)
AW380860 head_neck .a 1480 to 1777 1 to 298       298/298
(100 %)
2 diff
(99.4 %id)
CF455549 peripheral nervous system .a 1513 to 2273 1 to 760       760/761
(99 %)
2 diff
(99.8 %id)
AI110846 Liver .a 1527 to 2184 1 to 661       661/661
(100 %)
11 diff
(98.4 %id)
AF075345 Liver .a 1527 to 2184 1 to 661       661/661
(100 %)
11 diff
(98.4 %id)
BM701187 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1556 to 1923 1 to 368       368/368
(100 %)
2 diff
(99.5 %id)
BM715712 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1556 to 2289 1 to 730       730/730
(100 %)
4 diff
(99.5 %id)
AA317062 retina .a 1648 to 1962 1 to 318       318/318
(100 %)
3 diff
(99.1 %id)
AW967046   .a 1649 to 2310 1 to 661       661/668
(98 %)
24 diff
(96.5 %id)
BG900377 cartilage .a 1655 to 2236 39 to 620       582/620
(93 %)
6 diff
(99.1 %id)
BF921561 nervous_tumor .a 1656 to 2071 21 to 437       417/438
(95 %)
3 diff
(99.4 %id)
BM691699 eye, RPE and Choroid .a 1702 to 2210 1 to 509       509/509
(100 %)
4 diff
(99.3 %id)
AW157086 brain, frontal lobe .a 1783 to 2469 693 to 8       686/694
(98 %)
0 diff
(100 %id)
BM703024 eye, human retina .a 1792 to 2229 1 to 438   fully sequenced,   438/438
(100 %)
0 diff
(100 %id)
BQ638035 eye, retina .a 1803 to 2370 1 to 568       568/568
(100 %)
0 diff
(100 %id)
BM690254 eye, human retina .a 1810 to 2209 2 to 401   fully sequenced,   400/401
(99 %)
5 diff
(98.8 %id)
AA112141 muscle, skeletal muscle .a 1813 to 2179 1 to 368   fully sequenced,   368/368
(100 %)
4 diff
(99.0 %id)
BQ653839 hepatocellular carcinoma, cell line, Liver .a 1838 to 2468 6 to 635   AAA   630/635
(99 %)
6 diff
(99.1 %id)
BM690644 eye, Retina Foveal and Macular .a 1838 to 2465 1 to 627   fully sequenced, AAA   627/627
(100 %)
6 diff
(99.1 %id)
BQ648968 hepatocellular carcinoma, cell line, Liver .a 1843 to 2468 1 to 625       625/936
(66 %)
8 diff
(99.2 %id)
BM676266 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1867 to 2465 614 to 16   AAA   599/599
(100 %)
1 diff
(99.9 %id)
BM727774 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1901 to 2140 1 to 240   fully sequenced,   240/240
(100 %)
0 diff
(100 %id)
BJ995333 hepatoblastoma .a 1921 to 2426 506 to 1       506/506
(100 %)
0 diff
(100 %id)
BE857626 brain, glioblastoma (pooled) .a 1923 to 2462 540 to 1       540/540
(100 %)
0 diff
(100 %id)
CK903543 Islets of Langerhans, Pancreas .a 1937 to 2430 1 to 494       494/494
(100 %)
0 diff
(100 %id)
BI962857 Islets of Langerhans, Pancreas .a 1953 to 2418 1 to 466       466/466
(100 %)
0 diff
(100 %id)
BX645605   .a 2016 to 2345 1 to 329       329/329
(100 %)
2 diff
(99.4 %id)
C21109   .a 2027 to 2465 1 to 444       444/445
(99 %)
8 diff
(98.3 %id)
BM663332 eye, Retina Foveal and Macular .a 2040 to 2465 440 to 15   fully sequenced, AAA   426/426
(100 %)
0 diff
(100 %id)
AI861771 Kidney .a 2045 to 2464 425 to 6       420/425
(98 %)
0 diff
(100 %id)
T62038 Liver .a 2071 to 2466 405 to 1       405/431
(93 %)
13 diff
(97.0 %id)
AA565198 adrenal adenoma, adrenal gland .a 2078 to 2466 389 to 1       389/389
(100 %)
1 diff
(99.8 %id)
TI_151737391   .a 2081 to 2468 449 to 58   AAA   392/1310
(29 %)
10 diff
(99.3 %id)
BM681418 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2110 to 2465 374 to 19   fully sequenced, AAA   356/356
(100 %)
0 diff
(100 %id)
AA086234 muscle, skeletal muscle .a 2149 to 2469 328 to 1   fully sequenced,   328/328
(100 %)
11 diff
(96.7 %id)
BM662099 eye, human retina .a 2179 to 2471 311 to 19   fully sequenced, AAA   293/293
(100 %)
0 diff
(100 %id)
BG056098 anaplastic oligodendroglioma, brain .a 2197 to 2468 272 to 1       272/272
(100 %)
0 diff
(100 %id)
BU729250 eye, human retina .a 2199 to 2462 282 to 19   fully sequenced, AAA   264/264
(100 %)
4 diff
(98.5 %id)
R06106 liver and spleen .a 2257 to 2457 198 to 1       198/198
(100 %)
3 diff
(98.5 %id)
T73076 Liver .a 2318 to 2466 149 to 1       149/149
(100 %)
6 diff
(96.0 %id)
AK299677 brain .b 1 to 1249 5 to 1253 Y251C tiling clone,   1253/1253
(100 %)
2 diff
(99.9 %id)
DC375860 brain .b 1 to 577 5 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BI044935 ovary .b 892 to 1400 509 to 2   tiling clone,   508/509
(99 %)
0 diff
(100 %id)
BM903980 eye, retinoblastoma .c 1 to 802 6 to 809 G74A S233L K234P K235E K236E ... tiling clone,   809/966
(83 %)
9 diff
(99.1 %id)
BP230448 brain .d 1 to 582 1 to 582   tiling clone,   582/582
(100 %)
4 diff
(99.4 %id)
DA088702 cerebellum .d 29 to 507 2 to 480   capped   479/479
(100 %)
0 diff
(100 %id)
DA103867 cerebellum .d 29 to 578 2 to 551   tiling clone, capped   550/550
(100 %)
0 diff
(100 %id)
DA256447 caudate nucleus .d 29 to 584 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA822940 pericardium .d 29 to 572 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
BQ638985 eye, retina .d 212 to 834 1 to 623 exact tiling clone,   623/623
(100 %)
2 diff
(99.7 %id)
AA059362 eye, retina .e 1 to 424 1 to 424   tiling clone,   424/424
(100 %)
0 diff
(100 %id)
DA257762 caudate nucleus .e 173 to 735 2 to 564 exact tiling clone, capped   563/563
(100 %)
2 diff
(99.7 %id)
AA424234   .f 1 to 438 1 to 437 exact tiling clone,   437/437
(100 %)
1 diff
(99.8 %id)
DA259905 caudate nucleus .g-u 1 to 362 2 to 363 exact tiling clone, capped   362/362
(100 %)
0 diff
(100 %id)
AK293801 cerebellum Gene SLC38A3, variant not shown         Suspected internal deletion, this clone was ignored    
DC307314 cerebellum Gene SLC38A3, variant not shown         Suspected internal deletion, this clone was ignored    
AU279913   Gene SLC38A3, variant not shown         This clone was ignored    
BQ636322 eye, retina Gene SLC38A3, variant not shown         Suspected internal deletion, this clone was ignored    
BQ637742 eye, retina Gene SLC38A3, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
BQ637514 eye, retina Gene SLC38A3, variant not shown         Suspected internal deletion, this clone was ignored    
BJ994684 hepatoblastoma Gene SLC38A3, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
BJ994685 hepatoblastoma Gene SLC38A3, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
BP310916 brain Gene SLC38A3, variant not shown         Suspected internal deletion, suspected internal deletion, suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI