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Gene SLC28A3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
76 supporting clones for gene SLC28A3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK292849 trachea .a 1 to 2235 7 to 2241 A628S tiling clone,   2241/2241
(100 %)
3 diff
(99.9 %id)
DB218604 trachea .a 1 to 545 8 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB219501 trachea .a 1 to 558 7 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BX956954   .a 1 to 772 3 to 774       774/774
(100 %)
5 diff
(99.4 %id)
DB237216 trachea .a 1 to 526 2 to 528   tiling clone, capped   527/527
(100 %)
4 diff
(99.3 %id)
AK314039 trachea .a 14 to 2215 1 to 2202 Y113C I251V V293I A366T Y513F ... tiling clone,   2202/2202
(100 %)
9 diff
(99.6 %id)
BX951041   .a 14 to 659 1 to 646       646/646
(100 %)
2 diff
(99.7 %id)
DA461653 tongue, tumor tissue .a 15 to 598 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
DB201683 trachea .a 15 to 566 2 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
DB348376 trachea .a 1736 to 2276 541 to 1       541/541
(100 %)
1 diff
(99.9 %id)
DN997909 breast cancer, Mammary gland (cancer tissue) .a 2120 to 2586 8 to 474   tiling clone,   467/474
(98 %)
6 diff
(98.8 %id)
AK022042 whole embryo, mainly body .a 2252 to 4580 1 to 2329   tiling clone, available from FLJ,   2329/2329
(100 %)
0 diff
(100 %id)
AU120734 whole embryo, mainly body .a 2253 to 3142 2 to 888   capped   887/887
(100 %)
7 diff
(99.3 %id)
TI_149305428   .a 2275 to 2893 96 to 714     Submitted on the opposite strand 619/1031
(60 %)
1 diff
(100.0 %id)
BU685783 lung, Primary Lung Epithelial Cells .a 2275 to 2893 26 to 644     Submitted on the opposite strand 619/652
(94 %)
1 diff
(99.9 %id)
CB241597 Human Lung Epithelial cells, lung .a 2275 to 2845 26 to 595     Submitted on the opposite strand 570/595
(95 %)
6 diff
(99.0 %id)
DN998060 breast cancer, Mammary gland (cancer tissue) .a 2366 to 3034 1 to 669       669/669
(100 %)
5 diff
(99.3 %id)
BF900468 marrow .a 2458 to 2969 513 to 2     Submitted on the opposite strand 512/513
(99 %)
0 diff
(100 %id)
AW939829 denis_drash .a 2491 to 2855 4 to 368       365/369
(98 %)
29 diff
(92.2 %id)
AW939831 denis_drash .a 2498 to 2840 351 to 2     Submitted on the opposite strand 350/352
(99 %)
0 diff
(100 %id)
AW939832 denis_drash .a 2498 to 2846 350 to 1     Submitted on the opposite strand 350/350
(100 %)
12 diff
(96.6 %id)
BQ333664 marrow .a 2722 to 3075 356 to 1       356/356
(100 %)
11 diff
(97.0 %id)
CD356117 Blood vessels - aorta, basilar and artery .a 3039 to 3655 1 to 617       617/723
(85 %)
2 diff
(99.8 %id)
AI692813 adenocarcinoma, Pancreas .a 3135 to 3656 522 to 1       522/522
(100 %)
0 diff
(100 %id)
AW340625 pooled .a 3154 to 3643 490 to 1       490/490
(100 %)
1 diff
(99.8 %id)
BF063569 colon, colon tumor, RER+ .a 3216 to 3657 448 to 7       442/448
(98 %)
0 diff
(100 %id)
BF063097 colon, colon tumor, RER+ .a 3222 to 3657 438 to 3       436/438
(99 %)
0 diff
(100 %id)
BF000546 colon, colon tumor, RER+ .a 3287 to 3851 566 to 2       565/566
(99 %)
0 diff
(100 %id)
AA570052 colon .a 3348 to 3656 316 to 8       309/316
(97 %)
0 diff
(100 %id)
AI274238 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3484 to 3850 383 to 17   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 367/367
(100 %)
0 diff
(100 %id)
BF433068 carcinoid, lung .a 3689 to 4203 1 to 515     Submitted on the opposite strand 515/515
(100 %)
0 diff
(100 %id)
AI304899 carcinoid, lung .a 3693 to 4115 1 to 423     Submitted on the opposite strand 423/423
(100 %)
0 diff
(100 %id)
D20754   .a 4075 to 4468 1 to 396     Submitted on the opposite strand 396/396
(100 %)
5 diff
(98.8 %id)
AU146721 whole embryo, mainly body .a 4077 to 4580 503 to 1       503/503
(100 %)
7 diff
(98.7 %id)
AI091154 pooled .a 4150 to 4581 437 to 6       432/437
(98 %)
0 diff
(100 %id)
AA643687 colon, colon tumor RER+ .a 4214 to 4576 407 to 45   AAA   363/370
(98 %)
0 diff
(100 %id)
BM740922 stomach .a 4376 to 4925 1 to 556   tiling clone,   556/556
(100 %)
7 diff
(98.8 %id)
BP302495   .b 1 to 586 1 to 586   tiling clone,   586/586
(100 %)
2 diff
(99.7 %id)
AF305210   .b 260 to 2468 1 to 2209 exact tiling clone,   2209/2209
(100 %)
0 diff
(100 %id)
NM_022127.1   .b 260 to 2468 1 to 2209 exact RefSeq,   2209/2209
(100 %)
0 diff
(100 %id)
BC093821 Colon, PCR rescued clones .b 323 to 2444 1 to 2122 exact     2122/2122
(100 %)
2 diff
(100.0 %id)
BC093823 Colon, PCR rescued clones .b 323 to 2447 1 to 2125 exact     2125/2125
(100 %)
2 diff
(100.0 %id)
TI_891530045   .b 323 to 1468 65 to 1196       1132/1253
(90 %)
40 diff
(96.9 %id)
TI_891530046   .b 323 to 1374 66 to 1112       1047/1268
(82 %)
21 diff
(98.4 %id)
TI_891527394   .b 438 to 1577 1163 to 14       1146/1239
(92 %)
21 diff
(98.4 %id)
TI_891526694   .b 680 to 1706 22 to 1064     Submitted on the opposite strand 1048/1337
(78 %)
41 diff
(97.0 %id)
CN309695 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 686 to 1280 1 to 594       594/594
(100 %)
2 diff
(99.7 %id)
TI_891526701   .b 875 to 1987 35 to 1168     Submitted on the opposite strand 1134/1348
(84 %)
53 diff
(96.1 %id)
TI_891527393   .b 934 to 1965 1052 to 6       1047/1249
(83 %)
21 diff
(98.4 %id)
TI_891527386   .b 1021 to 1964 962 to 16       947/1227
(77 %)
4 diff
(99.7 %id)
TI_891526702   .b 1219 to 2078 12 to 877     Submitted on the opposite strand 866/1196
(72 %)
24 diff
(98.0 %id)
TI_891527381   .b 1226 to 2299 1107 to 21       1085/1223
(88 %)
25 diff
(98.0 %id)
TI_891526696   .b 1229 to 2180 21 to 978     Submitted on the opposite strand 958/1323
(72 %)
21 diff
(98.5 %id)
TI_891527388   .b 1229 to 2298 1101 to 21       1081/1241
(87 %)
20 diff
(98.4 %id)
TI_891530039   .b 1365 to 2449 1129 to 51       1079/1280
(84 %)
11 diff
(99.2 %id)
TI_891530040   .b 1378 to 2449 1118 to 51       1068/1278
(83 %)
6 diff
(99.6 %id)
BQ334770 marrow .b 1432 to 1672 276 to 33       244/276
(88 %)
4 diff
(98.6 %id)
TI_891526691   .b 1617 to 2449 11 to 844     Submitted on the opposite strand 834/1258
(66 %)
7 diff
(99.5 %id)
TI_891526697   .b 1619 to 2449 15 to 845     Submitted on the opposite strand 831/1268
(65 %)
1 diff
(100.0 %id)
AI905993 breast .b 1691 to 2129 439 to 1       439/439
(100 %)
5 diff
(98.9 %id)
TI_891526698   .b 1842 to 2449 13 to 619     Submitted on the opposite strand 607/1299
(46 %)
7 diff
(99.5 %id)
TI_891526692   .b 1848 to 2449 18 to 620     Submitted on the opposite strand 603/1283
(46 %)
7 diff
(99.5 %id)
AK304406 trachea .c 1 to 2482 2 to 2483 F436L tiling clone,   2483/2483
(100 %)
4 diff
(99.9 %id)
DB239039 trachea .c 1 to 577 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DB219882 trachea .c 12 to 572 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
BI063004 uterus_tumor .c 100 to 613 514 to 1       514/514
(100 %)
1 diff
(99.9 %id)
DR002960 fetal brain .c 110 to 700 1 to 590       590/590
(100 %)
5 diff
(99.2 %id)
AW083022 colon, moderately differentiated adenocarcinoma .c 1879 to 2446 568 to 1       568/577
(98 %)
12 diff
(98.0 %id)
AW605906 head_neck .c 2128 to 2573 13 to 458   tiling clone,   448/472
(94 %)
15 diff
(96.9 %id)
BM766944 stomach .c 2144 to 2546 1 to 402   tiling clone,   402/402
(100 %)
1 diff
(99.8 %id)
BF883202 lung_tumor .c 2373 to 2556 185 to 1   tiling clone, Submitted on the opposite strand 185/185
(100 %)
19 diff
(89.8 %id)
BP364577 lung .d 1 to 579 3 to 582   tiling clone,   582/582
(100 %)
3 diff
(99.5 %id)
DA911459   .d 1 to 547 2 to 548   tiling clone, capped   547/547
(100 %)
0 diff
(100 %id)
DB331426   .d 2209 to 2744 536 to 1   tiling clone,   536/536
(100 %)
1 diff
(99.9 %id)
AK310861 trachea .e 1 to 1424 2 to 1425 R158G tiling clone,   1425/1425
(100 %)
2 diff
(99.9 %id)
BX476539   .e 1226 to 1777 1 to 560   tiling clone,   560/560
(100 %)
16 diff
(97.2 %id)
DA646556 mammary gland .f 1 to 743 2 to 744 G147X S150F C158W E163K S168F tiling clone, capped   743/830
(89 %)
7 diff
(99.2 %id)
AK074678 mammary gland .g-u 1 to 1632 728 to 2359 exact tiling clone, available from FLJ,   1632/2359
(69 %)
6 diff
(99.8 %id)
TI_891526700   Gene SLC28A3, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C