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Gene SLC16A1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
351 supporting clones for gene SLC16A1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA115459 cerebellum .a 1 to 506 2 to 507   tiling clone, capped   506/507
(99 %)
3 diff
(99.5 %id)
DA629739 Kidney .a 51 to 597 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
AK094064 uterus .a 182 to 2382 1 to 2201   tiling clone, available from FLJ,   2201/2201
(100 %)
1 diff
(100.0 %id)
NM_001166496.1   .a 182 to 4557 1 to 4376 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 4376/4376
(100 %)
0 diff
(100 %id)
DB257734 uterus .a 183 to 757 2 to 576   capped   575/577
(99 %)
1 diff
(99.9 %id)
BI463950 testis .a 198 to 853 1 to 656       656/660
(99 %)
11 diff
(98.4 %id)
DA334388 hippocampus .a 203 to 770 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB456770 testis .a 203 to 694 1 to 492       492/492
(100 %)
0 diff
(100 %id)
DB066460 testis .a 208 to 509 2 to 303   capped   302/308
(98 %)
1 diff
(99.7 %id)
BQ435933 melanotic melanoma, skin .a 210 to 885 1 to 681       681/931
(73 %)
13 diff
(98.7 %id)
DB073989 testis .a 215 to 644 2 to 431   capped   430/430
(100 %)
1 diff
(99.8 %id)
BI561767 testis .a 245 to 968 1 to 736       736/755
(97 %)
31 diff
(95.9 %id)
TI_44350365   .a 245 to 968 120 to 855       736/874
(84 %)
31 diff
(96.5 %id)
DB351492 uterus .a 1839 to 2382 544 to 1       544/544
(100 %)
1 diff
(99.9 %id)
TI_44000427   .b 1 to 708 87 to 799       713/799
(89 %)
10 diff
(98.8 %id)
DC342225 thalamus .b 4 to 562 1 to 559   tiling clone,   559/559
(100 %)
1 diff
(99.9 %id)
DB443025 testis .b 6 to 426 1 to 422       422/422
(100 %)
2 diff
(99.6 %id)
NM_003051.3   .b 6 to 3912 1 to 3907 exact RefSeq, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 3907/3907
(100 %)
0 diff
(100 %id)
DB459688 testis .b 23 to 469 1 to 447       447/447
(100 %)
1 diff
(99.8 %id)
DC372873   .b 23 to 560 1 to 538       538/538
(100 %)
0 diff
(100 %id)
DA501391 brain .b 24 to 584 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DC401643 testis .b 31 to 503 1 to 473       473/473
(100 %)
0 diff
(100 %id)
AJ438943 colon .b 41 to 466 1 to 426       426/426
(100 %)
0 diff
(100 %id)
DB097007 testis .b 49 to 618 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
TI_57174437   .b 62 to 858 36 to 845       789/845
(93 %)
24 diff
(97.2 %id)
DA758034   .b 104 to 645 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA193254 amygdala .b 113 to 713 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
DA760204   .b 113 to 656 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA861733 placenta .b 113 to 678 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BM146092 leukopheresis .b 113 to 587 1 to 475       475/485
(97 %)
5 diff
(99.0 %id)
BM147900 leukopheresis .b 113 to 499 1 to 387       387/398
(97 %)
6 diff
(98.5 %id)
DA193968 amygdala .b 115 to 695 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA233721 brain .b 115 to 681 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA713139   .b 115 to 672 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA739413   .b 115 to 656 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA739921   .b 115 to 656 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA758026   .b 115 to 656 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA944352 Spleen .b 115 to 663 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB085031 testis .b 115 to 671 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB091064 testis .b 115 to 684 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA211607 brain .b 131 to 674 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA721459   .b 136 to 646 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
DA799758 brain .b 136 to 677 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB219578 trachea .b 138 to 690 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BP235362 coronary artery .b 142 to 772 1 to 628       628/628
(100 %)
4 diff
(99.4 %id)
DA306486 hippocampus .b 143 to 725 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA743077   .b 143 to 651 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
DR158988 human embryonic stem cells differentiated toan early endodermal cell type .b 144 to 848 1 to 705       705/705
(100 %)
0 diff
(100 %id)
DA235231 brain .b 161 to 729 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA447708 tongue, tumor tissue .b 161 to 730 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
BP238035 Liver .b 161 to 746 1 to 586       586/586
(100 %)
8 diff
(98.7 %id)
DA717322   .b 161 to 723 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA811179 brain .b 161 to 656 2 to 497   capped   496/496
(100 %)
0 diff
(100 %id)
DB149633 thymus .b 161 to 728 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BP258385 heart .b 162 to 743 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA032274   .b 163 to 736 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BC026317 Brain, hippocampus .b 163 to 3402 1 to 3240 exact available from MGC, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 3240/3240
(100 %)
5 diff
(99.9 %id)
DA190992 amygdala .b 163 to 742 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA247264 brain .b 163 to 766 2 to 605   capped   604/604
(100 %)
1 diff
(99.9 %id)
DA326443 hippocampus .b 163 to 656 2 to 495   capped   494/494
(100 %)
0 diff
(100 %id)
DA367466 subthalamic nucleus .b 163 to 725 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA383441 thalamus .b 163 to 731 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA408574 thalamus .b 163 to 700 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA415074 thalamus .b 163 to 736 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA459442 tongue, tumor tissue .b 163 to 686 2 to 525   capped   524/524
(100 %)
0 diff
(100 %id)
DA461334 tongue, tumor tissue .b 163 to 739 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
DB471441 hippocampus .b 163 to 652 1 to 490       490/490
(100 %)
1 diff
(99.8 %id)
DA544888   .b 163 to 728 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA658441   .b 163 to 742 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DA716500   .b 163 to 735 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA747502   .b 163 to 711 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB023697 testis .b 163 to 709 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
BP198832 brain .b 164 to 755 1 to 592       592/592
(100 %)
0 diff
(100 %id)
BP198981 brain .b 164 to 752 1 to 589       589/589
(100 %)
0 diff
(100 %id)
AK312500 thalamus .b 164 to 1871 1 to 1709 T478A     1709/1709
(100 %)
2 diff
(99.9 %id)
DA021513   .b 164 to 736 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA029530   .b 164 to 732 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA121940 cerebellum .b 164 to 694 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DA310483 hippocampus .b 164 to 734 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA387471 thalamus .b 164 to 750 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA399988 thalamus .b 164 to 739 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA409765 thalamus .b 164 to 792 2 to 632   capped   631/631
(100 %)
2 diff
(99.7 %id)
DA414309 thalamus .b 164 to 738 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA415191 thalamus .b 164 to 679 2 to 517   capped   516/516
(100 %)
0 diff
(100 %id)
BP208664 cerebellum .b 164 to 743 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
DA433927 tongue, tumor tissue .b 164 to 676 2 to 514   capped   513/513
(100 %)
0 diff
(100 %id)
DA449505 tongue, tumor tissue .b 164 to 656 2 to 494   capped   493/493
(100 %)
0 diff
(100 %id)
DA520081 brain .b 164 to 735 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DB452248 testis .b 164 to 663 1 to 499       499/499
(100 %)
2 diff
(99.6 %id)
DB494623 hypothalamus .b 164 to 676 1 to 513       513/513
(100 %)
0 diff
(100 %id)
BP237645 Liver .b 164 to 786 1 to 624       624/625
(99 %)
13 diff
(98.0 %id)
BP279752   .b 164 to 745 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP280902   .b 164 to 745 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA655350   .b 164 to 730 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA655770   .b 164 to 725 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
AU310938 neuroblastoma .b 164 to 744 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA710954   .b 164 to 702 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA711658   .b 164 to 728 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA712314   .b 164 to 722 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA712934   .b 164 to 707 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA722272   .b 164 to 740 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
AU123845   .b 164 to 856 2 to 694   capped   693/693
(100 %)
2 diff
(99.8 %id)
AU131557   .b 164 to 934 2 to 771   capped   770/770
(100 %)
2 diff
(99.8 %id)
DA747667   .b 164 to 727 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA757391   .b 164 to 708 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA757957   .b 164 to 706 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA811577 brain .b 164 to 727 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA815814   .b 164 to 729 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA845640 placenta .b 164 to 729 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA852268 placenta .b 164 to 713 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA858613 placenta .b 164 to 748 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA860239 placenta .b 164 to 726 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA861660 placenta .b 164 to 729 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA863243 placenta .b 164 to 782 2 to 620   capped   619/619
(100 %)
1 diff
(99.9 %id)
DA887758   .b 164 to 738 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA930276 small intestine .b 164 to 681 2 to 519   capped   518/518
(100 %)
0 diff
(100 %id)
DB068911 testis .b 164 to 704 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DB073943 testis .b 164 to 703 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DB074805 testis .b 164 to 698 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DB079368 testis .b 164 to 727 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB079688 testis .b 164 to 703 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DB079817 testis .b 164 to 661 2 to 499   capped   498/498
(100 %)
0 diff
(100 %id)
DB084533 testis .b 164 to 715 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB086261 testis .b 164 to 726 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB088831 testis .b 164 to 697 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DB092286 testis .b 164 to 712 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB092720 testis .b 164 to 724 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB092812 testis .b 164 to 713 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB098537 testis .b 164 to 734 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB099755 testis .b 164 to 733 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB137697 thymus .b 164 to 709 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB152277 thymus .b 164 to 746 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB152512 thymus .b 164 to 763 2 to 601   capped   600/600
(100 %)
0 diff
(100 %id)
DB158253 thymus .b 164 to 741 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB170807 kidney, tumor tissue .b 164 to 744 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB182321 liver, tumor tissue .b 164 to 716 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB238222 trachea .b 164 to 725 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB290864 uterus .b 164 to 759 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
BP380691   .b 164 to 862 1 to 700       700/703
(99 %)
30 diff
(95.8 %id)
BP380808   .b 164 to 1040 1 to 891       891/913
(97 %)
38 diff
(95.9 %id)
DA006883   .b 165 to 737 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA021969   .b 165 to 728 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA023448   .b 165 to 730 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA247116 brain .b 165 to 753 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA373869 thalamus .b 165 to 729 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA403047 thalamus .b 165 to 717 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA409280 thalamus .b 165 to 727 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA439418 tongue, tumor tissue .b 165 to 738 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA487554 brain .b 165 to 676 2 to 513   capped   512/512
(100 %)
0 diff
(100 %id)
DA518690 brain .b 165 to 723 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA534263 brain .b 165 to 742 2 to 580   capped   579/579
(100 %)
3 diff
(99.5 %id)
DA580218   .b 165 to 724 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BP284423 bone marrow .b 165 to 751 1 to 587       587/587
(100 %)
0 diff
(100 %id)
DA647538   .b 165 to 989 2 to 832   capped   831/838
(99 %)
11 diff
(98.7 %id)
DA657325   .b 165 to 721 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA667104   .b 165 to 716 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA720568   .b 165 to 729 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA722602   .b 165 to 752 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA725759   .b 165 to 725 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
AU130301   .b 165 to 1028 2 to 868   capped   867/867
(100 %)
10 diff
(98.9 %id)
DA757257   .b 165 to 706 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA863471 placenta .b 165 to 817 2 to 654   capped   653/653
(100 %)
0 diff
(100 %id)
DA990680 synovial membrane tissue from rheumatioidarthritis .b 165 to 694 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
BP351113   .b 165 to 747 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DB089487 testis .b 165 to 708 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DB095806 testis .b 165 to 726 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB097992 testis .b 165 to 757 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DB131745 thymus .b 165 to 703 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB131853 thymus .b 165 to 703 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB201652 trachea .b 165 to 728 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB232633 trachea .b 165 to 713 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB247692 uterus .b 165 to 728 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BP380535   .b 165 to 919 1 to 759       759/926
(81 %)
16 diff
(98.3 %id)
TI_44166179   .b 166 to 965 167 to 966       800/966
(82 %)
21 diff
(97.9 %id)
TI_44000990   .b 166 to 706 91 to 632       542/632
(85 %)
11 diff
(98.3 %id)
DB076861 testis .b 166 to 711 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB087491 testis .b 166 to 729 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA117640 cerebellum .b 167 to 734 8 to 576   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA475935   .b 167 to 742 9 to 584   capped   576/576
(100 %)
1 diff
(99.9 %id)
BP351917   .b 167 to 745 8 to 587       580/580
(100 %)
1 diff
(99.9 %id)
DB077614 testis .b 167 to 722 8 to 563   capped   556/556
(100 %)
0 diff
(100 %id)
DA798126 brain .b 168 to 747 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DB080770 testis .b 168 to 735 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BY796489 eye .b 170 to 768 1 to 599       599/599
(100 %)
0 diff
(100 %id)
AL162079 melanoma (MeWo cell line) .b 176 to 3530 1 to 3355 D490E tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 3355/3355
(100 %)
2 diff
(100.0 %id)
BX402967   .b 176 to 1221 1 to 1035       1035/1045
(99 %)
11 diff
(99.0 %id)
BX384531   .b 176 to 1276 1 to 1094       1094/1110
(98 %)
15 diff
(98.7 %id)
BU182084 eye, retinoblastoma .b 176 to 1014 1 to 849       849/931
(91 %)
23 diff
(97.6 %id)
CX787827 human embryonic stem cells .b 176 to 1032 1 to 857       857/857
(100 %)
0 diff
(100 %id)
CX758359 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 176 to 873 1 to 698     Submitted on the opposite strand 698/698
(100 %)
0 diff
(100 %id)
CX761551 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 176 to 895 1 to 717     Submitted on the opposite strand 717/831
(86 %)
8 diff
(99.1 %id)
DR157359 human embryonic stem cells differentiated toan early endodermal cell type .b 176 to 872 1 to 697       697/697
(100 %)
0 diff
(100 %id)
AF239919 colon .b 177 to 356 1 to 180       180/180
(100 %)
1 diff
(99.5 %id)
DN991142 brain, whole brain .b 177 to 864 8 to 695       688/695
(98 %)
0 diff
(100 %id)
BM468550 leiomyosarcoma, uterus .b 178 to 1081 1 to 908       908/1093
(83 %)
34 diff
(96.9 %id)
CB270411 adipose .b 180 to 758 1 to 579       579/579
(100 %)
0 diff
(100 %id)
CN398284 embryonic stem cells, DMSO-treated H9 cellline .b 183 to 747 1 to 565       565/565
(100 %)
0 diff
(100 %id)
DR159612 human embryonic stem cells differentiated toan early endodermal cell type .b 186 to 977 1 to 792       792/792
(100 %)
0 diff
(100 %id)
CX752754 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 187 to 969 1 to 776     Submitted on the opposite strand 776/840
(92 %)
15 diff
(98.3 %id)
DA128096 cerebellum .b 192 to 762 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
CN398300 embryonic stem cells, cell lines H1, H7, andH9 .b 196 to 883 1 to 688       688/688
(100 %)
0 diff
(100 %id)
CN398279 embryonic stem cells, cell lines H1, H7, andH9 .b 216 to 840 1 to 625       625/625
(100 %)
0 diff
(100 %id)
CN398291 embryonic stem cells, cell lines H1, H7, andH9 .b 217 to 888 1 to 672       672/672
(100 %)
0 diff
(100 %id)
DA489844 brain .b 217 to 793 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
CN398269 embryonic stem cells, cell lines H1, H7, andH9 .b 220 to 820 1 to 601       601/601
(100 %)
0 diff
(100 %id)
CN398301 embryonic stem cells, cell lines H1, H7, andH9 .b 220 to 899 1 to 680       680/680
(100 %)
0 diff
(100 %id)
CX755195 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 225 to 960 1 to 736     Submitted on the opposite strand 736/736
(100 %)
0 diff
(100 %id)
CN398274 embryonic stem cells, cell lines H1, H7, andH9 .b 227 to 877 1 to 651       651/651
(100 %)
0 diff
(100 %id)
CN398304 embryonic stem cells, cell lines H1, H7, andH9 .b 228 to 774 1 to 547       547/547
(100 %)
0 diff
(100 %id)
BP353115   .b 230 to 812 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BI827590 brain, medulla .b 238 to 1094 1 to 864       864/865
(99 %)
27 diff
(96.9 %id)
TI_57171485   .b 238 to 1094 62 to 925       864/926
(93 %)
32 diff
(96.6 %id)
CN398303 embryonic stem cells, cell lines H1, H7, andH9 .b 242 to 936 1 to 695       695/695
(100 %)
0 diff
(100 %id)
TI_57183744   .b 257 to 870 130 to 742       613/766
(80 %)
20 diff
(97.4 %id)
CX760519 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 269 to 1038 1 to 763     Submitted on the opposite strand 763/792
(96 %)
14 diff
(98.3 %id)
DA414388 thalamus .b 289 to 853 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
CN398298 embryonic stem cells, DMSO-treated H9 cellline .b 300 to 858 1 to 559       559/559
(100 %)
0 diff
(100 %id)
DA393966 thalamus .b 312 to 905 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
L31801   .b 357 to 2934 1 to 2578 A480T D490E     2578/2578
(100 %)
2 diff
(100.0 %id)
DB265811 uterus .b 364 to 936 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
CN398285 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 383 to 1138 1 to 756       756/756
(100 %)
0 diff
(100 %id)
BP240094 Liver .b 457 to 1021 1 to 565       565/565
(100 %)
6 diff
(99.0 %id)
BP240561 Liver .b 457 to 1019 1 to 563       563/563
(100 %)
5 diff
(99.2 %id)
DA555367   .b 488 to 1040 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
AU122992   .b 568 to 1292 2 to 725   capped   724/726
(99 %)
12 diff
(98.4 %id)
DA370755 thalamus .b 589 to 1144 3 to 572   capped   583/571
(102 %)
57 diff
(90.1 %id)
DA453507 tongue, tumor tissue .b 619 to 1179 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA530208 brain .b 624 to 1229 2 to 607   capped   606/606
(100 %)
1 diff
(99.9 %id)
DA514278 brain .b 670 to 1225 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA382100 thalamus .b 782 to 1335 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA131293 alzheimer cortex .b 789 to 1361 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
TI_57233859   .b 877 to 1667 1 to 793       793/804
(98 %)
22 diff
(97.3 %id)
DA030115   .b 910 to 1472 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB253524 uterus .b 998 to 1564 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BM465616 eye, retinoblastoma .b 1029 to 1600 90 to 665       576/1361
(42 %)
61 diff
(95.6 %id)
DA544505   .b 1058 to 1622 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BI061638 uterus_tumor .b 1087 to 1491 405 to 1       405/405
(100 %)
0 diff
(100 %id)
BI062707 uterus_tumor .b 1102 to 1491 390 to 1       390/390
(100 %)
0 diff
(100 %id)
BI063315 uterus_tumor .b 1104 to 1491 388 to 1       388/388
(100 %)
0 diff
(100 %id)
CB132987 Liver .b 1111 to 1716 1 to 606       606/625
(96 %)
1 diff
(99.9 %id)
AK000641   .b 1121 to 3402 1 to 2282   available from FLJ, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 2282/2282
(100 %)
3 diff
(99.9 %id)
BY997565   .b 1124 to 1717 1 to 594       594/594
(100 %)
1 diff
(99.9 %id)
DA745528   .b 1125 to 1685 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA156434 amygdala .b 1155 to 1667 2 to 514   capped   513/513
(100 %)
0 diff
(100 %id)
AI355299 lung .b 1233 to 1738 506 to 1       506/512
(98 %)
0 diff
(100 %id)
BF885094 testis_normal .b 1371 to 1491 120 to 1     Submitted on the opposite strand 120/120
(100 %)
3 diff
(97.5 %id)
BG777761 adenocarcinoma, Prostate .b 1428 to 2014 1 to 587       587/588
(99 %)
1 diff
(99.9 %id)
AW197218 pooled germ cell tumors .b 1479 to 1983 505 to 1       505/505
(100 %)
0 diff
(100 %id)
BF885093 testis_normal .b 1507 to 1989 482 to 2     Submitted on the opposite strand 481/482
(99 %)
1 diff
(99.8 %id)
BI061637 uterus_tumor .b 1507 to 1686 180 to 1       180/180
(100 %)
1 diff
(99.5 %id)
BI062706 uterus_tumor .b 1507 to 1686 180 to 1       180/180
(100 %)
1 diff
(99.5 %id)
BI063314 uterus_tumor .b 1507 to 1686 180 to 1       180/180
(100 %)
0 diff
(100 %id)
BQ375303 testis_normal .b 1507 to 2005 505 to 8       498/505
(98 %)
0 diff
(100 %id)
DA596354   .b 1592 to 2146 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
BG681668 skin, squamous cell carcinoma .b 1592 to 2357 1 to 767       767/771
(99 %)
23 diff
(97.1 %id)
AJ438942 colon .b 1667 to 3402 1 to 1736   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1736/1736
(100 %)
2 diff
(99.9 %id)
CR624057 Placenta Cot 25-normalized .b 1690 to 3373 1 to 1684   tiling clone,   1684/1684
(100 %)
0 diff
(100 %id)
BX398376 Placenta Cot 25-normalized .b 1690 to 2526 1 to 835   fully sequenced,   835/835
(100 %)
1 diff
(99.9 %id)
BQ344200 nervous_tumor .b 1740 to 1952 219 to 6       214/222
(96 %)
0 diff
(100 %id)
X85567   .b 1822 to 2138 319 to 8       312/319
(97 %)
0 diff
(100 %id)
Z21106   .b 1822 to 2138 319 to 8       312/319
(97 %)
0 diff
(100 %id)
CA426348 cell lines, Chondrosarcoma .b 1830 to 2601 788 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 770/770
(100 %)
3 diff
(99.7 %id)
CB146726 Liver .b 1888 to 2546 1 to 659       659/659
(100 %)
0 diff
(100 %id)
BP252713 Kidney .b 1930 to 2514 1 to 585       585/585
(100 %)
0 diff
(100 %id)
BQ631056 insulinoma, Pancreas .b 1938 to 2495 8 to 566       559/566
(98 %)
6 diff
(99.0 %id)
CK902126 insulinoma, Pancreas .b 1938 to 2509 8 to 579       572/579
(98 %)
6 diff
(99.0 %id)
BM806260 leiomyosarcoma, uterus .b 2058 to 3118 1 to 1069       1069/1071
(99 %)
29 diff
(97.3 %id)
CN336896 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 2135 to 2735 1 to 601       601/601
(100 %)
0 diff
(100 %id)
EB386202 eye, optic nerve .b 2164 to 2952 1 to 789       789/789
(100 %)
0 diff
(100 %id)
BE612988 adenocarcinoma, ovary .b 2194 to 2927 1 to 727       727/737
(98 %)
14 diff
(98.2 %id)
BM542763 leiomyosarcoma, uterus .b 2220 to 2956 1 to 741       741/994
(74 %)
12 diff
(98.8 %id)
BX402966   .b 2243 to 3368 1114 to 1       1114/1115
(99 %)
34 diff
(97.0 %id)
CN336898 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 2253 to 2912 1 to 660       660/660
(100 %)
0 diff
(100 %id)
CR602423 T cells (Jurkat cell line) Cot10-normalized .b 2255 to 3373 1 to 1119       1119/1119
(100 %)
0 diff
(100 %id)
AL559409 T cells from T cell leukemia .b 2255 to 2819 1 to 565   fully sequenced,   565/565
(100 %)
0 diff
(100 %id)
BM806786 melanotic melanoma, skin .b 2270 to 3274 1 to 1015       1015/1041
(97 %)
26 diff
(97.6 %id)
F00687 leg muscle, skeletal muscle .b 2310 to 2613 312 to 2       311/338
(92 %)
0 diff
(100 %id)
AU123636   .b 2337 to 3086 2 to 749   capped   748/749
(99 %)
3 diff
(99.6 %id)
CN336895 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 2357 to 3041 1 to 685       685/685
(100 %)
1 diff
(99.9 %id)
BE937890 testis_normal .b 2421 to 2662 233 to 6       228/233
(97 %)
0 diff
(100 %id)
BE937897 testis_normal .b 2421 to 2703 289 to 1       289/289
(100 %)
0 diff
(100 %id)
BF886176 testis_normal .b 2421 to 2695 275 to 1     Submitted on the opposite strand 275/275
(100 %)
0 diff
(100 %id)
BX398375 Placenta Cot 25-normalized .b 2496 to 3373 878 to 1   fully sequenced,   878/878
(100 %)
12 diff
(98.7 %id)
M62141   .b 2530 to 2889 361 to 1       361/361
(100 %)
1 diff
(99.8 %id)
TI_57229959   .b 2546 to 3333 130 to 912       783/876
(89 %)
42 diff
(95.3 %id)
CA390216 eye, RPE/choroid .b 2608 to 3151 1 to 544       544/544
(100 %)
0 diff
(100 %id)
BX384530   .b 2676 to 3373 698 to 1       698/1012
(68 %)
6 diff
(99.5 %id)
TI_154118367   .b 2689 to 3407 856 to 138   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 719/938
(76 %)
10 diff
(99.0 %id)
BQ573814 Chondrosarcoma Grade II, Left Pelvis .b 2729 to 3402 692 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 674/674
(100 %)
0 diff
(100 %id)
TI_154038533   .b 2771 to 3407 721 to 85   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 637/930
(68 %)
5 diff
(99.5 %id)
AL581038 T cells from T cell leukemia .b 2789 to 3373 584 to 1   fully sequenced,   584/584
(100 %)
6 diff
(99.0 %id)
TI_159723861   .b 2822 to 3402 676 to 96   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 581/1015
(57 %)
1 diff
(100.0 %id)
BQ006944 Chondrosarcoma, Left Pelvis .b 2834 to 3530 714 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 696/696
(100 %)
2 diff
(99.8 %id)
DB367518   .b 2851 to 3407 557 to 1       557/557
(100 %)
0 diff
(100 %id)
CK902125 insulinoma, Pancreas .b 2872 to 3407 551 to 16   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 536/536
(100 %)
1 diff
(99.9 %id)
DB540174 hippocampus .b 2915 to 3407 1 to 493     Submitted on the opposite strand 493/493
(100 %)
0 diff
(100 %id)
DB522200 testis .b 2918 to 3402 1 to 485     Submitted on the opposite strand 485/485
(100 %)
1 diff
(99.8 %id)
BQ613806 insulinoma, Pancreas .b 2920 to 3407 503 to 16   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 488/488
(100 %)
0 diff
(100 %id)
DB506798 testis .b 2927 to 3402 1 to 475     Submitted on the opposite strand 475/475
(100 %)
12 diff
(97.5 %id)
DB519125 testis .b 2930 to 3402 1 to 473     Submitted on the opposite strand 473/473
(100 %)
2 diff
(99.6 %id)
BE813047 amnion_normal .b 2935 to 3185 276 to 14       263/276
(95 %)
0 diff
(100 %id)
AA285369   .b 2936 to 3396 457 to 1       457/500
(91 %)
6 diff
(98.8 %id)
BM145028 leukopheresis .b 2936 to 3399 490 to 26   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 465/475
(97 %)
10 diff
(97.9 %id)
TI_149271113   .b 2943 to 3407 550 to 86   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 465/983
(47 %)
8 diff
(99.2 %id)
DB565673 hypothalamus .b 2948 to 3407 1 to 460     Submitted on the opposite strand 460/460
(100 %)
0 diff
(100 %id)
FN135948 breast carcinoma .b 2957 to 3041 1 to 84       84/85
(98 %)
2 diff
(97.7 %id)
BM145135 leukopheresis .b 2958 to 3399 467 to 26   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 442/443
(99 %)
8 diff
(98.2 %id)
DB517802 testis .b 2968 to 3408 1 to 441     Submitted on the opposite strand 441/444
(99 %)
1 diff
(99.8 %id)
DB525129 testis .b 2973 to 3402 1 to 430     Submitted on the opposite strand 430/430
(100 %)
0 diff
(100 %id)
BI048783 uterus .b 3019 to 3190 196 to 22       175/197
(88 %)
0 diff
(100 %id)
DB507961 testis .b 3026 to 3402 1 to 377     Submitted on the opposite strand 377/377
(100 %)
3 diff
(99.3 %id)
AA130505   .b 3124 to 3408 300 to 8     Submitted on the opposite strand 293/304
(96 %)
0 diff
(100 %id)
FN067150 breast carcinoma .b 3125 to 3241 116 to 1     Submitted on the opposite strand 116/117
(99 %)
1 diff
(99.2 %id)
AA174180   .b 3164 to 3394 227 to 1       227/227
(100 %)
4 diff
(98.3 %id)
R16207 whole brain .b 3201 to 3596 1 to 399       399/407
(98 %)
5 diff
(98.8 %id)
AA492375 Prostate .b 3273 to 3406 139 to 6       134/139
(96 %)
0 diff
(100 %id)
BG202056   .b 3283 to 3579 313 to 14   AAA Submitted on the opposite strand 300/325
(92 %)
0 diff
(100 %id)
DB344922 thymus .b 3284 to 3829 1 to 546     Submitted on the opposite strand 546/546
(100 %)
0 diff
(100 %id)
BP294493 Liver .b 3293 to 3874 1 to 582   tiling clone,   582/582
(100 %)
0 diff
(100 %id)
AA174188   .b 3314 to 3406 94 to 2       93/95
(97 %)
0 diff
(100 %id)
EC476216 Prostate .b 3326 to 3408 1 to 80       80/81
(98 %)
4 diff
(95.1 %id)
AA029159 uterus .b 3334 to 3751 1 to 417   fully sequenced,   417/417
(100 %)
0 diff
(100 %id)
DB368594   .b 3378 to 3916 538 to 1   tiling clone,   538/542
(99 %)
6 diff
(98.9 %id)
TI_157597706   .b 3388 to 3912 615 to 91   tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 525/526
(99 %)
5 diff
(99.1 %id)
FN120033 breast carcinoma .b 3495 to 3604 1 to 113       113/116
(97 %)
4 diff
(96.6 %id)
ES315895 melanoma cell line .b 3533 to 3815 341 to 55     Submitted on the opposite strand 287/346
(82 %)
0 diff
(100 %id)
AA029056 uterus .b 3721 to 3910 199 to 1   fully sequenced,   199/199
(100 %)
1 diff
(99.5 %id)
FN090358 breast carcinoma .b 3740 to 3847 107 to 1     Submitted on the opposite strand 107/107
(100 %)
3 diff
(97.2 %id)
R16206 whole brain .b 3951 to 4216 267 to 1   tiling clone,   267/268
(99 %)
1 diff
(99.7 %id)
BC045664 testis .c 1 to 3117 1 to 3116 exact tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 3116/3116
(100 %)
2 diff
(100.0 %id)
CB142622 Liver .c 1898 to 2285 1 to 389       389/389
(100 %)
5 diff
(98.8 %id)
DA548746   .d 1 to 577 2 to 578   tiling clone, capped   577/577
(100 %)
1 diff
(99.9 %id)
BP350856   .d 21 to 601 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DA474013   .d 22 to 594 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
BM458323 lymph, lymphoma, cell line .d 34 to 1106 1 to 1088 K201X P202A A205G E215* tiling clone,   1088/1121
(97 %)
35 diff
(96.9 %id)
DA027357   .d 136 to 704 10 to 578   capped   569/569
(100 %)
0 diff
(100 %id)
DC403548 testis .e 1 to 557 1 to 558   tiling clone,   558/558
(100 %)
1 diff
(99.9 %id)
BQ435228 melanotic melanoma, skin .e 161 to 737 27 to 603 L128F N129D F157V C159W L164P ... tiling clone,   872/900
(96 %)
35 diff
(96.2 %id)
DA022865   .f 1 to 545 2 to 547   tiling clone, capped   546/546
(100 %)
2 diff
(99.7 %id)
CN398286 embryonic stem cells, DMSO-treated H9 cellline .f 10 to 756 1 to 747   tiling clone,   747/747
(100 %)
5 diff
(99.4 %id)
CX762513 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .f 14 to 774 1 to 757   tiling clone, Submitted on the opposite strand 757/757
(100 %)
11 diff
(98.6 %id)
DA604379   .g 1 to 491 2 to 495 V118S I119H G120L G121E L122V ... tiling clone, capped   494/499
(98 %)
7 diff
(98.6 %id)
BP220362 colon .h 1 to 576 1 to 576 exact tiling clone,   580/580
(100 %)
4 diff
(99.4 %id)
AA436491 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 1 to 452 1 to 448 R28V G29E T30L P31Q A32P ... tiling clone, fully sequenced,   448/448
(100 %)
4 diff
(99.2 %id)
AA639346 colon, colon tumor RER+ .i 32 to 477 441 to 1   tiling clone,   441/441
(100 %)
5 diff
(98.9 %id)
AA639347 colon, colon tumor RER+ .i 99 to 477 378 to 1       378/378
(100 %)
1 diff
(99.8 %id)
BF510302   .i 106 to 478 390 to 18   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 373/373
(100 %)
0 diff
(100 %id)
AA436446 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 117 to 482 366 to 1   tiling clone, fully sequenced,   366/366
(100 %)
0 diff
(100 %id)
AA659133 alveolar rhabdomyosarcoma .i 147 to 478 332 to 1       332/349
(95 %)
2 diff
(99.5 %id)
BX502067 Liver .j 1 to 537 1 to 537   tiling clone,   537/537
(100 %)
0 diff
(100 %id)
AW937779 denis_drash .j 380 to 813 1 to 431 exact tiling clone,   431/431
(100 %)
9 diff
(98.0 %id)
CA306256 Alveolar Macrophage, lung .k-u 1 to 726 745 to 19 T75R tiling clone, AAA   727/727
(100 %)
5 diff
(99.4 %id)
AK303603 thymus Gene SLC16A1, variant not shown         Suspected internal deletion, this clone was ignored    
AK296688 tongue, tumor tissue Gene SLC16A1, variant not shown         Suspected internal deletion, this clone was ignored    
DC345469 tongue, tumor tissue Gene SLC16A1, variant not shown         Suspected internal deletion, this clone was ignored    
CF134824 CNCAP(3)T-225 cell line, Prostate Gene SLC16A1, variant not shown         Submitted on the opposite strand    
DB093235 testis Gene SLC16A1, variant not shown       capped This clone was ignored    
DB341560 testis Gene SLC16A1, variant not shown         This clone was ignored    
DC410513 thymus Gene SLC16A1, variant not shown         Suspected internal deletion, this clone was ignored    
TI_154162951   Gene SLC16A1, variant not shown       AAA Submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI