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Gene SLC13A1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
36 supporting clones for gene SLC13A1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA621392 Kidney .a 1 to 532 2 to 533   tiling clone, capped   532/532
(100 %)
2 diff
(99.7 %id)
AF260824   .a 17 to 3812 1 to 3799 exact tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 3799/3799
(100 %)
7 diff
(99.9 %id)
NM_022444.3   .a 17 to 3812 1 to 3796 exact RefSeq, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 3796/3796
(100 %)
1 diff
(100.0 %id)
AK026413 ileal mucosa .a 19 to 2810 1 to 2793 V481A tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 2793/2793
(100 %)
8 diff
(99.8 %id)
AK314537 Kidney .a 19 to 1829 1 to 1811 exact     1811/1811
(100 %)
0 diff
(100 %id)
AU076807   .a 19 to 91 1 to 72       72/72
(100 %)
2 diff
(97.3 %id)
BP274129 Kidney .a 19 to 594 1 to 577       577/584
(98 %)
4 diff
(99.4 %id)
BP275063 Kidney .a 19 to 594 1 to 576       576/582
(98 %)
8 diff
(98.7 %id)
BP276158 Kidney .a 19 to 490 1 to 472       472/581
(81 %)
17 diff
(97.1 %id)
BP277322 Kidney .a 19 to 591 1 to 573       573/582
(98 %)
16 diff
(97.3 %id)
BP382927 ilea mucosa .a 20 to 706 1 to 688       688/818
(84 %)
9 diff
(98.9 %id)
DA625633 Kidney .a 20 to 555 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA631716 Kidney .a 20 to 594 2 to 576   capped   575/583
(98 %)
0 diff
(100 %id)
DA635738 Kidney .a 20 to 578 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
BP276743 Kidney .a 719 to 1300 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DA622212 Kidney .a 977 to 1523 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
BG430415 Kidney .a 1444 to 2055 1 to 615       615/617
(99 %)
8 diff
(98.8 %id)
BG400459 Kidney .a 1616 to 2383 1 to 765       765/869
(88 %)
24 diff
(97.3 %id)
AI792169 Kidney .a 1795 to 2328 1 to 533       533/533
(100 %)
5 diff
(99.1 %id)
BX104566 Kidney .a 1801 to 2499 1 to 699       699/699
(100 %)
1 diff
(99.9 %id)
BG433404 Kidney .a 1897 to 2663 1 to 769       769/769
(100 %)
15 diff
(98.1 %id)
AI733589 Kidney .a 2332 to 2899 568 to 1       568/568
(100 %)
0 diff
(100 %id)
AI732845 Kidney .a 2346 to 2899 554 to 1       554/554
(100 %)
1 diff
(99.9 %id)
AI015652 Kidney .a 2381 to 2899 519 to 1       519/519
(100 %)
0 diff
(100 %id)
AA858019 Kidney .a 2512 to 2899 388 to 1       388/388
(100 %)
0 diff
(100 %id)
AI469201 Kidney .a 2958 to 3227 270 to 1   tiling clone,   270/270
(100 %)
0 diff
(100 %id)
AI209074 Kidney .a 3255 to 3496 1 to 242     Submitted on the opposite strand 242/242
(100 %)
1 diff
(99.6 %id)
AI820807 Kidney .a 3260 to 3496 1 to 237   tiling clone, Submitted on the opposite strand 237/237
(100 %)
0 diff
(100 %id)
AI792474 Kidney .a 3275 to 3520 255 to 10     Submitted on the opposite strand 246/255
(96 %)
0 diff
(100 %id)
AA886292 Kidney .a 3297 to 3500 1 to 204     Submitted on the opposite strand 204/204
(100 %)
0 diff
(100 %id)
BC111775 PCR rescued clones .b 1 to 2454 4 to 2457 exact tiling clone,   2457/2457
(100 %)
2 diff
(100.0 %id)
BP270064 small intestine .b 13 to 593 1 to 583       583/583
(100 %)
4 diff
(99.4 %id)
BG054487 Kidney .c 1 to 547 570 to 24 K18I tiling clone, AAA   547/547
(100 %)
3 diff
(99.5 %id)
AW236701 Kidney .d 1 to 538 546 to 8 T11P N12T Q78I G79Q K80N ... tiling clone,   539/546
(98 %)
2 diff
(99.7 %id)
AI491922 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .e-u 1 to 463 462 to 1 exact tiling clone,   462/462
(100 %)
2 diff
(99.6 %id)
BG428081 Kidney Gene SLC13A1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C