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Gene SLC12A3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
124 supporting clones for gene SLC12A3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_000339.2   .a 1 to 5564 2 to 5565 A264G RefSeq, AAA   5565/5565
(100 %)
1 diff
(100.0 %id)
U44128   .a 23 to 3153 1 to 3131 A264G D766E tiling clone,   3131/3131
(100 %)
3 diff
(100.0 %id)
BC111850 Synthetic constructs .a 26 to 3128 32 to 3134 exact tiling clone,   3103/3151
(98 %)
12 diff
(99.7 %id)
AK315298 placenta .b 1 to 3118 2 to 3119 A263G S538P E777* tiling clone,   3119/3119
(100 %)
4 diff
(99.9 %id)
NM_001126107.1   .b 1 to 5561 2 to 5562 A263G RefSeq, AAA   5562/5562
(100 %)
1 diff
(100.0 %id)
DA861898 placenta .b 1 to 585 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
BX951241   .b 3 to 483 1 to 480       480/480
(100 %)
2 diff
(99.6 %id)
BX458868 placenta .b 9 to 978 1 to 964       964/973
(99 %)
14 diff
(98.6 %id)
TI_1093061720   .b 1881 to 2471 597 to 6       591/597
(98 %)
0 diff
(100 %id)
TI_1093061678   .b 1883 to 2472 593 to 4       590/593
(99 %)
0 diff
(100 %id)
TI_1093061677   .b 2035 to 2625 592 to 2       591/592
(99 %)
0 diff
(100 %id)
TI_1093061719   .b 2035 to 2629 597 to 5       593/598
(99 %)
0 diff
(100 %id)
TI_1093061676   .b 2167 to 2772 609 to 4   tiling clone,   606/609
(99 %)
0 diff
(100 %id)
TI_1093061718   .b 2167 to 2771 610 to 6       603/610
(98 %)
0 diff
(100 %id)
TI_1093061675   .b 2318 to 2933 617 to 2       616/617
(99 %)
3 diff
(99.6 %id)
TI_1093061717   .b 2321 to 2908 608 to 20       589/608
(96 %)
3 diff
(99.6 %id)
NM_001126108.1   .c 1 to 5537 2 to 5538 A264G RefSeq, AAA   5538/5538
(100 %)
1 diff
(100.0 %id)
BP274871 Kidney .c 1 to 553 1 to 553       553/553
(100 %)
7 diff
(98.8 %id)
DA632754 Kidney .c 1 to 549 2 to 550   tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
X91220 Kidney .c 4 to 4211 1 to 4208 A264G A459V G460V tiling clone,   4208/4211
(99 %)
13 diff
(99.7 %id)
AL543208 placenta, Placenta Cot 25-normalized .c 12 to 876 1 to 858       858/862
(99 %)
13 diff
(98.5 %id)
TI_1093061691   .c 26 to 438 420 to 8       413/421
(98 %)
1 diff
(99.8 %id)
TI_1093061695   .c 26 to 595 30 to 599     Submitted on the opposite strand 570/599
(95 %)
6 diff
(99.0 %id)
TI_1093061696   .c 26 to 527 117 to 619     Submitted on the opposite strand 503/619
(81 %)
7 diff
(98.9 %id)
TI_1093061733   .c 26 to 435 416 to 7       410/421
(97 %)
1 diff
(99.8 %id)
TI_1093061737   .c 26 to 596 29 to 599     Submitted on the opposite strand 571/599
(95 %)
6 diff
(99.0 %id)
TI_1093061738   .c 26 to 529 117 to 621     Submitted on the opposite strand 505/621
(81 %)
7 diff
(98.9 %id)
TI_1093061732   .c 29 to 601 579 to 6       574/586
(97 %)
4 diff
(99.4 %id)
TI_1093061690   .c 37 to 601 571 to 7       565/575
(98 %)
0 diff
(100 %id)
TI_1093061689   .c 157 to 755 605 to 8       598/606
(98 %)
0 diff
(100 %id)
TI_1093061731   .c 159 to 755 599 to 3       597/599
(99 %)
0 diff
(100 %id)
TI_1093061688   .c 304 to 893 601 to 12       590/601
(98 %)
0 diff
(100 %id)
TI_1093061730   .c 307 to 881 600 to 26       575/600
(95 %)
0 diff
(100 %id)
TI_1093061729   .c 446 to 1043 603 to 6       598/603
(99 %)
0 diff
(100 %id)
TI_1093061687   .c 448 to 1047 603 to 3   tiling clone,   601/608
(98 %)
0 diff
(100 %id)
TI_1093061686   .c 628 to 1232 607 to 2       606/607
(99 %)
0 diff
(100 %id)
TI_1093061728   .c 629 to 1224 604 to 6       599/604
(99 %)
3 diff
(99.6 %id)
CD608193   .c 688 to 1397 1 to 710       710/710
(100 %)
7 diff
(99.1 %id)
BX390244 Placenta Cot 25-normalized .c 760 to 1580 1 to 820       820/839
(97 %)
32 diff
(96.2 %id)
TI_1093061685   .c 779 to 1369 607 to 18       591/607
(97 %)
0 diff
(100 %id)
TI_1093061727   .c 779 to 1374 600 to 5       596/600
(99 %)
0 diff
(100 %id)
CD608192   .c 917 to 1797 902 to 8       892/902
(98 %)
17 diff
(98.2 %id)
TI_1093061726   .c 937 to 1544 609 to 1       609/609
(100 %)
5 diff
(99.2 %id)
TI_1093061684   .c 939 to 1543 612 to 6   tiling clone,   607/612
(99 %)
2 diff
(99.7 %id)
TI_1093061683   .c 1099 to 1690 599 to 5       593/599
(98 %)
5 diff
(99.2 %id)
TI_1093061725   .c 1116 to 1695 593 to 13       581/612
(94 %)
5 diff
(99.2 %id)
BP254838 Kidney .c 1201 to 1786 1 to 586       586/587
(99 %)
2 diff
(99.7 %id)
TI_1093061724   .c 1260 to 1853 610 to 17       593/610
(97 %)
0 diff
(100 %id)
TI_1093061682   .c 1262 to 1864 609 to 6       604/609
(99 %)
1 diff
(99.9 %id)
CD608188   .c 1305 to 1561 270 to 14       257/270
(95 %)
1 diff
(99.7 %id)
CD608189   .c 1309 to 1561 1 to 254       254/268
(94 %)
2 diff
(99.3 %id)
TI_1093061723   .c 1457 to 2013 559 to 1       559/559
(100 %)
3 diff
(99.5 %id)
TI_1093061681   .c 1459 to 2011 559 to 5       552/559
(98 %)
5 diff
(99.2 %id)
BI258072 cervical carcinoma cell line, cervix .c 1499 to 2263 1 to 766       766/766
(100 %)
8 diff
(99.0 %id)
TI_1093061722   .c 1569 to 2163 598 to 5       594/598
(99 %)
0 diff
(100 %id)
TI_1093061680   .c 1572 to 2164 596 to 4       593/596
(99 %)
0 diff
(100 %id)
BE543416 cervical carcinoma cell line, cervix .c 1620 to 2280 62 to 715       654/845
(77 %)
22 diff
(97.4 %id)
CD608186   .c 1645 to 2283 1 to 642       642/643
(99 %)
7 diff
(99.0 %id)
CD608191   .c 1697 to 2396 764 to 19       529/765
(69 %)
36 diff
(95.3 %id)
CD608187   .c 1710 to 2378 672 to 10   tiling clone,   663/672
(98 %)
7 diff
(99.0 %id)
BP254001 Kidney .c 1723 to 2304 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
TI_1093061679   .c 1726 to 2311 588 to 3       586/588
(99 %)
0 diff
(100 %id)
CD608190   .c 1764 to 1898 1 to 135       135/135
(100 %)
0 diff
(100 %id)
TI_1093061721   .c 1965 to 2320 356 to 1       356/356
(100 %)
3 diff
(99.2 %id)
BI259266 cervical carcinoma cell line, cervix .c 2431 to 3142 1 to 713       713/713
(100 %)
1 diff
(99.9 %id)
AA862417 Kidney .c 2449 to 2843 1 to 394     Submitted on the opposite strand 394/394
(100 %)
13 diff
(96.8 %id)
TI_1093061674   .c 2458 to 3059 614 to 2       613/614
(99 %)
2 diff
(99.7 %id)
TI_1093061716   .c 2458 to 3067 610 to 1       610/612
(99 %)
4 diff
(99.4 %id)
BI764101 pooled colon, kidney, stomach .c 2507 to 3205 87 to 789       703/789
(89 %)
18 diff
(97.8 %id)
TI_57146596   .c 2507 to 3205 176 to 878       703/878
(80 %)
18 diff
(98.0 %id)
BE544311 cervical carcinoma cell line, cervix .c 2574 to 3320 1 to 741       741/741
(100 %)
17 diff
(97.8 %id)
TI_1093061693   .c 2597 to 3101 613 to 109     Submitted on the opposite strand 505/613
(82 %)
0 diff
(100 %id)
BI253584 cervical carcinoma cell line, cervix .c 2597 to 3516 1 to 935   tiling clone,   935/1060
(88 %)
32 diff
(97.0 %id)
TI_1093061735   .c 2600 to 3101 607 to 106     Submitted on the opposite strand 502/607
(82 %)
0 diff
(100 %id)
BE544258 cervical carcinoma cell line, cervix .c 2613 to 3320 1 to 708       708/708
(100 %)
2 diff
(99.8 %id)
AW271606 Kidney .c 2797 to 3247 454 to 4       451/454
(99 %)
0 diff
(100 %id)
BG428254 Kidney .c 2821 to 3597 1 to 785       785/1053
(74 %)
47 diff
(95.6 %id)
BX371478 Placenta Cot 25-normalized .c 2855 to 3321 475 to 10   tiling clone,   466/615
(75 %)
7 diff
(98.9 %id)
DA622459 Kidney .d 1 to 539 2 to 540 exact tiling clone, capped   539/539
(100 %)
0 diff
(100 %id)
DW445455 Liver .e-u 1 to 204 17 to 220   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 204/221
(92 %)
7 diff
(96.9 %id)
AI984825 Kidney .e-u 98 to 586 490 to 1   tiling clone,   490/490
(100 %)
4 diff
(99.2 %id)
AW292635   .e-u 373 to 657 287 to 3   tiling clone,   285/297
(95 %)
0 diff
(100 %id)
AW242402 Kidney .e-u 382 to 626 245 to 1       245/245
(100 %)
3 diff
(98.8 %id)
AW237411 Kidney .e-u 406 to 622 217 to 1       217/217
(100 %)
0 diff
(100 %id)
AI991394 Kidney .e-u 453 to 614 162 to 1       162/162
(100 %)
0 diff
(100 %id)
BF593072 Kidney .e-u 653 to 1132 1 to 480   tiling clone, Submitted on the opposite strand 480/487
(98 %)
3 diff
(99.4 %id)
BG428750 Kidney .f 1 to 539 1 to 545 T51N K91E N92E R93Q V94S ...     545/545
(100 %)
17 diff
(96.9 %id)
BG428497 Kidney .f 1 to 734 1 to 726 exact tiling clone,   726/734
(98 %)
10 diff
(98.7 %id)
DW420824 Liver .f 624 to 906 17 to 299   tiling clone,   283/299
(94 %)
6 diff
(98.0 %id)
BG433622 Kidney .g 1 to 529 1 to 538 exact tiling clone,   538/819
(65 %)
18 diff
(97.9 %id)
BI253348 cervical carcinoma cell line, cervix .h-u 1 to 771 1 to 782 exact tiling clone,   782/784
(99 %)
29 diff
(96.4 %id)
AL569917.
matches multiple genes
placenta, Placenta Cot 25-normalized .h-u 314 to 1354 1033 to 4   tiling clone, also hits gene CD53 1030/1043
(98 %)
0 diff
(100 %id)
BE543513 cervical carcinoma cell line, cervix .h-u 560 to 1283 1 to 732   tiling clone,   732/1041
(70 %)
69 diff
(93.4 %id)
BX412307.
matches multiple genes
placenta .h-u 930 to 1371 441 to 1   tiling clone, also hits gene RIPK1 441/641
(68 %)
19 diff
(97.1 %id)
BX094663 Kidney .h-u 952 to 1380 1 to 429   AAA   429/429
(100 %)
0 diff
(100 %id)
AI262776 Kidney .h-u 984 to 1381 400 to 3       398/400
(99 %)
0 diff
(100 %id)
AI627943 Kidney .h-u 1095 to 1546 452 to 1   tiling clone,   452/452
(100 %)
0 diff
(100 %id)
AI640779 Kidney .h-u 1103 to 1376 275 to 2       274/275
(99 %)
0 diff
(100 %id)
BI089973 cervix .h-u 1712 to 2631 1 to 930   tiling clone,   930/935
(99 %)
32 diff
(96.6 %id)
CB047517 Kidney .h-u 1827 to 2115 10 to 298   fully sequenced,   289/298
(96 %)
0 diff
(100 %id)
BX117319 Kidney .h-u 1864 to 2371 1 to 508       508/508
(100 %)
1 diff
(99.9 %id)
BF510426   .h-u 2062 to 2703 659 to 18   AAA   642/642
(100 %)
1 diff
(99.9 %id)
CB047516 Kidney .h-u 2085 to 2701 655 to 39   fully sequenced,   617/655
(94 %)
18 diff
(97.3 %id)
AW242967 Kidney .h-u 2141 to 2703 564 to 1       564/564
(100 %)
2 diff
(99.7 %id)
AI627841 Kidney .h-u 2170 to 2704 534 to 1       534/534
(100 %)
1 diff
(99.9 %id)
BE501821 Kidney .h-u 2176 to 2705 530 to 1   tiling clone,   530/530
(100 %)
0 diff
(100 %id)
AI927312 Kidney .h-u 2178 to 2703 542 to 17   AAA   526/526
(100 %)
2 diff
(99.7 %id)
AW780003 Kidney .h-u 2211 to 2704 494 to 1       494/494
(100 %)
9 diff
(98.2 %id)
BE048906 Kidney .h-u 2211 to 2703 515 to 23   AAA   493/493
(100 %)
5 diff
(99.0 %id)
AW299981 Kidney .h-u 2212 to 2700 490 to 2       489/490
(99 %)
0 diff
(100 %id)
AI915905 Kidney .h-u 2217 to 2693 472 to 1       472/472
(100 %)
7 diff
(98.6 %id)
AI474031 Kidney .h-u 2223 to 2676 456 to 1       456/456
(100 %)
1 diff
(99.8 %id)
AI478655 Kidney .h-u 2223 to 2694 491 to 20   AAA   472/472
(100 %)
2 diff
(99.6 %id)
AI492448 Kidney .h-u 2226 to 2694 469 to 1       469/469
(100 %)
0 diff
(100 %id)
AW270971 Kidney .h-u 2246 to 2694 449 to 1       449/449
(100 %)
2 diff
(99.6 %id)
AW235525 Kidney .h-u 2249 to 2698 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
AI942229 Kidney .h-u 2268 to 2694 426 to 1       426/426
(100 %)
4 diff
(99.1 %id)
AI628112 Kidney .h-u 2270 to 2694 437 to 13   AAA   425/425
(100 %)
1 diff
(99.8 %id)
AI796178 Kidney .h-u 2370 to 2703 356 to 23   AAA   334/334
(100 %)
11 diff
(96.8 %id)
AI768571 Kidney .h-u 2420 to 2697 281 to 3       279/281
(99 %)
0 diff
(100 %id)
AW195848 Kidney .h-u 2423 to 2700 280 to 3       278/280
(99 %)
0 diff
(100 %id)
AI479482 Kidney .h-u 2446 to 2776 331 to 1   tiling clone,   331/331
(100 %)
0 diff
(100 %id)
AK223133 Kidney Gene SLC12A3, variant not shown       AAA This clone was ignored    
BF509516   Gene SLC12A3, variant not shown       AAA This clone was ignored    
BF510969   Gene SLC12A3, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI