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Gene SLC10A1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
74 supporting clones for gene SLC10A1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK314028 Liver .a 1 to 1179 7 to 1185 Y139H     1185/1185
(100 %)
4 diff
(99.7 %id)
DA642547 Liver .a 1 to 536 7 to 543   capped   542/542
(100 %)
3 diff
(99.5 %id)
NM_003049.3   .a 1 to 1626 6 to 1631 exact RefSeq,   1631/1631
(100 %)
0 diff
(100 %id)
T68645 Liver .a 1 to 267 5 to 272       272/272
(100 %)
3 diff
(98.9 %id)
BJ995017 hepatoblastoma .a 1 to 598 3 to 600   tiling clone,   600/600
(100 %)
2 diff
(99.7 %id)
DA035838 breast .a 1 to 589 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
W01479 liver and spleen .a 23 to 517 1 to 494       494/494
(100 %)
13 diff
(97.4 %id)
DR003995 Liver .a 28 to 719 8 to 699       692/699
(98 %)
7 diff
(99.0 %id)
CB123014 Liver .a 41 to 644 1 to 604       604/604
(100 %)
0 diff
(100 %id)
BC069799 PCR rescued clones .a 48 to 1587 1 to 1540 exact available from MGC,   1540/1540
(100 %)
0 diff
(100 %id)
L21893 Liver .a 48 to 1626 1 to 1579 exact tiling clone,   1579/1580
(99 %)
1 diff
(100.0 %id)
BC069822 PCR rescued clones .a 49 to 1587 1 to 1539 exact available from MGC,   1539/1539
(100 %)
0 diff
(100 %id)
AY544127   .a 69 to 1228 1 to 1160 exact     1160/1160
(100 %)
0 diff
(100 %id)
BC126298 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 76 to 1216 1 to 1141 exact     1141/1141
(100 %)
0 diff
(100 %id)
BC136355 Testicle, PCR rescued clones .a 76 to 1216 1 to 1141 exact     1141/1141
(100 %)
0 diff
(100 %id)
TI_1520874333   .a 76 to 1017 56 to 1005       950/1006
(94 %)
22 diff
(97.9 %id)
TI_1520875389   .a 76 to 822 52 to 796       745/807
(92 %)
16 diff
(98.1 %id)
CB154117 Liver .a 91 to 723 1 to 633       633/633
(100 %)
0 diff
(100 %id)
CB162482 Liver .a 91 to 667 1 to 575       575/575
(100 %)
2 diff
(99.7 %id)
BC074724 Brain, PCR rescued clones .a 102 to 1224 1 to 1123 exact available from MGC,   1123/1123
(100 %)
1 diff
(100.0 %id)
TI_1948228397   .a 128 to 1181 1170 to 120 E2G H4P N5K A6G S7L ...     1051/1301
(80 %)
58 diff
(95.6 %id)
EL736345 mixed .a 130 to 737 1 to 608       608/608
(100 %)
0 diff
(100 %id)
TI_1948228395   .a 130 to 873 142 to 892       751/1498
(50 %)
25 diff
(98.4 %id)
TI_1948228396   .a 130 to 1006 132 to 1018       887/1332
(66 %)
28 diff
(97.9 %id)
TI_1948228689   .a 130 to 1071 137 to 1076       940/1417
(66 %)
33 diff
(97.7 %id)
TI_1948228690   .a 130 to 1182 130 to 1186 S255T E257K S267F T268P P276L ...     1057/1266
(83 %)
56 diff
(95.6 %id)
TI_1948228989   .a 130 to 874 139 to 890       752/1470
(51 %)
17 diff
(98.9 %id)
TI_1948228990   .a 130 to 1047 129 to 1053       925/1296
(71 %)
37 diff
(97.2 %id)
TI_1948229294   .a 130 to 997 137 to 1010       874/1451
(60 %)
22 diff
(98.5 %id)
TI_1948229295   .a 130 to 1080 128 to 1084       957/1264
(75 %)
42 diff
(96.7 %id)
TI_1520874707   .a 195 to 1217 1114 to 73       1042/1217
(85 %)
28 diff
(97.7 %id)
TI_1520875391   .a 214 to 1217 1081 to 76       1006/1082
(92 %)
14 diff
(98.8 %id)
TI_1948229297   .a 222 to 1181 1084 to 121       964/1329
(72 %)
39 diff
(97.1 %id)
TI_1948228991   .a 250 to 1181 1073 to 121       953/1382
(68 %)
44 diff
(96.9 %id)
CB164333 Liver .a 277 to 874 1 to 598       598/598
(100 %)
1 diff
(99.9 %id)
TI_1520872759   .a 300 to 692 401 to 9     Submitted on the opposite strand 393/401
(98 %)
7 diff
(98.3 %id)
TI_1948229296   .a 557 to 1074 763 to 231       533/1269
(42 %)
22 diff
(98.3 %id)
TI_1520876755   .a 635 to 931 313 to 16       298/313
(95 %)
1 diff
(99.7 %id)
TI_1948228691   .a 695 to 1181 549 to 60       490/1178
(41 %)
9 diff
(99.3 %id)
TI_1520875843   .a 714 to 1217 645 to 142       504/645
(78 %)
0 diff
(100 %id)
CB157583 Liver .a 717 to 1197 1 to 481       481/481
(100 %)
0 diff
(100 %id)
TI_1520872615   .a 810 to 1217 483 to 76       408/483
(84 %)
0 diff
(100 %id)
TI_1520876769   .a 913 to 1217 444 to 140       305/444
(68 %)
1 diff
(99.8 %id)
N70966 liver and spleen .a 1188 to 1626 443 to 1       443/443
(100 %)
5 diff
(98.9 %id)
BJ995018 hepatoblastoma .a 1193 to 1593 401 to 1       401/401
(100 %)
0 diff
(100 %id)
AA701183 liver and spleen .a 1263 to 1626 364 to 1       364/364
(100 %)
1 diff
(99.8 %id)
T68568 Liver .a 1281 to 1618 339 to 1       339/339
(100 %)
1 diff
(99.8 %id)
T67771 Liver .b 1 to 455 1 to 462   tiling clone,   462/462
(100 %)
25 diff
(94.6 %id)
T67695 Liver .b 729 to 1268 559 to 9   tiling clone,   551/559
(98 %)
19 diff
(96.7 %id)
AW862492 colon .b 1053 to 1612 24 to 582   tiling clone,   559/603
(92 %)
3 diff
(99.6 %id)
BF356838 head_neck .c-u 1 to 497 37 to 533 K30E tiling clone,   497/533
(93 %)
6 diff
(98.9 %id)
AL712508 human skeletal muscle .c-u 487 to 944 1 to 458   tiling clone,   458/458
(100 %)
0 diff
(100 %id)
AV764080 bone marrow .c-u 508 to 849 1 to 338       338/365
(92 %)
16 diff
(95.7 %id)
EC459186 Prostate .d-u 1 to 67 1 to 66       66/66
(100 %)
3 diff
(95.5 %id)
EL947486 eyeball .d-u 1 to 354 51 to 409   tiling clone,   359/409
(87 %)
10 diff
(97.6 %id)
EC487782 Prostate .d-u 2 to 112 1 to 111       111/111
(100 %)
2 diff
(98.2 %id)
EC559122 Prostate .d-u 2 to 112 1 to 114       114/114
(100 %)
3 diff
(97.4 %id)
BE245760 leukopheresis .d-u 2 to 570 1 to 569 K12*     569/569
(100 %)
3 diff
(99.5 %id)
AJ708962 heart .d-u 3 to 531 14 to 543       530/543
(97 %)
6 diff
(98.9 %id)
FN062918 breast carcinoma .d-u 8 to 117 1 to 112       112/112
(100 %)
2 diff
(98.3 %id)
EC574497 Prostate .d-u 10 to 113 18 to 124       107/124
(86 %)
6 diff
(95.2 %id)
CB269720 adipose .d-u 16 to 646 1 to 631 exact tiling clone,   631/631
(100 %)
3 diff
(99.6 %id)
FN066863 breast carcinoma .d-u 53 to 177 1 to 125       125/125
(100 %)
0 diff
(100 %id)
FN070652 breast carcinoma .d-u 55 to 177 6 to 128       123/128
(96 %)
5 diff
(96.1 %id)
AA367886 placenta .d-u 95 to 362 1 to 267       267/267
(100 %)
3 diff
(98.9 %id)
BE939572 uterus .d-u 96 to 384 23 to 309       287/322
(89 %)
7 diff
(97.9 %id)
AW972382   .d-u 187 to 566 1 to 380 V2A W7G F8L F10V F11S ...     380/389
(97 %)
22 diff
(94.4 %id)
FN063509 breast carcinoma .d-u 215 to 324 1 to 113       113/113
(100 %)
3 diff
(97.4 %id)
BQ319496 colon .d-u 322 to 653 1 to 329 F10Y Q18P V19S I20Y Y21L ...     329/329
(100 %)
12 diff
(96.4 %id)
EC464058 Prostate .d-u 329 to 425 1 to 99       99/123
(80 %)
3 diff
(97.6 %id)
H58267 liver and spleen .d-u 341 to 703 1 to 364 R14M Q18X V19X     364/368
(98 %)
4 diff
(99.0 %id)
AW900429 nervous_normal .d-u 422 to 811 9 to 401 L6M F10L V27C N28Q tiling clone,   393/401
(98 %)
6 diff
(98.6 %id)
FN176582 breast carcinoma .d-u 522 to 624 1 to 102       102/102
(100 %)
1 diff
(99.1 %id)
BF751171 breast_normal .d-u 575 to 713 13 to 150       138/157
(87 %)
3 diff
(98.1 %id)
FN075512 breast carcinoma .d-u 579 to 674 1 to 94       94/95
(98 %)
4 diff
(95.8 %id)
FN138026 breast carcinoma Gene SLC10A1, variant not shown         This clone was ignored    
FN048723 breast carcinoma Gene SLC10A1, variant not shown         This clone was ignored    
AW576687 breast Gene SLC10A1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C