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Gene SIX6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
41 supporting clones for gene SIX6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM721584 eye, fetal eye .a 1 to 418 1 to 418   tiling clone,   418/418
(100 %)
1 diff
(99.8 %id)
BM721609 eye, fetal eye .a 1 to 451 1 to 451       451/451
(100 %)
3 diff
(99.4 %id)
CR598634 T cells (Jurkat cell line) Cot10-normalized .a 201 to 1748 1 to 1548 exact tiling clone,   1548/1548
(100 %)
0 diff
(100 %id)
BX340899   .a 201 to 1133 1 to 930       930/930
(100 %)
5 diff
(99.5 %id)
BX367694   .a 201 to 1149 1 to 945       945/945
(100 %)
22 diff
(97.7 %id)
BX400691   .a 201 to 1147 1 to 940       940/940
(100 %)
15 diff
(98.5 %id)
CR594317 T cells (Jurkat cell line) Cot10-normalized .a 202 to 1583 1 to 1382 exact     1382/1382
(100 %)
0 diff
(100 %id)
BX366211   .a 202 to 1079 1 to 865       865/893
(96 %)
30 diff
(96.7 %id)
CR593154 T cells (Jurkat cell line) Cot10-normalized .a 210 to 1704 1 to 1495 exact     1495/1495
(100 %)
0 diff
(100 %id)
BX346741   .a 210 to 1220 1 to 1006 P5X P11X P106X I125X W126S ...     1006/1015
(99 %)
49 diff
(95.2 %id)
BX399991   .a 210 to 1175 1 to 961       961/1031
(93 %)
20 diff
(98.1 %id)
CR609464 T cells (Jurkat cell line) Cot10-normalized .a 234 to 1747 1 to 1514 exact     1514/1514
(100 %)
0 diff
(100 %id)
BX341307   .a 234 to 1070 1 to 837       837/837
(100 %)
29 diff
(96.6 %id)
CA390553 eye, RPE/choroid .a 236 to 809 1 to 574       574/574
(100 %)
1 diff
(99.9 %id)
BQ637470 eye, retina .a 244 to 874 1 to 631       631/631
(100 %)
0 diff
(100 %id)
BC065831 Pituitary .a 270 to 1742 1 to 1473 exact available from MGC, AAA   1473/1473
(100 %)
0 diff
(100 %id)
NM_007374.2   .a 270 to 1742 1 to 1473 exact RefSeq, AAA   1473/1473
(100 %)
0 diff
(100 %id)
CD107910 brain, Pituitary .a 271 to 1108 1 to 847   available from MGC,   847/868
(97 %)
15 diff
(98.3 %id)
CA393341 eye, RPE/choroid .a 292 to 809 1 to 517       517/517
(100 %)
1 diff
(99.9 %id)
BC087852 Pituitary .a 292 to 1580 1 to 1289 exact AAA   1289/1289
(100 %)
0 diff
(100 %id)
CD107824 brain, Pituitary .a 293 to 1118 1 to 830       830/843
(98 %)
8 diff
(99.1 %id)
BC069413 PCR rescued clones .a 366 to 1278 1 to 913 H141N available from MGC,   913/913
(100 %)
2 diff
(99.8 %id)
AJ011785   .a 375 to 1744 1 to 1370 H141N     1370/1370
(100 %)
3 diff
(99.8 %id)
BX400690   .a 713 to 1553 832 to 1       832/907
(91 %)
40 diff
(95.6 %id)
CR605575 T cells (Jurkat cell line) .a 715 to 1528 1 to 814       814/814
(100 %)
0 diff
(100 %id)
BX422092 T cells (Jurkat cell line) .a 715 to 1214 1 to 501   fully sequenced,   501/501
(100 %)
3 diff
(99.5 %id)
AA311469   .a 727 to 1136 1 to 411       409/411
(99 %)
5 diff
(98.8 %id)
BX346740   .a 826 to 1686 873 to 18       856/873
(98 %)
20 diff
(97.8 %id)
BX341306   .a 842 to 1692 853 to 1       853/853
(100 %)
14 diff
(98.4 %id)
BM929996 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 879 to 977 1 to 99   fully sequenced,   99/99
(100 %)
0 diff
(100 %id)
BX347421   .a 920 to 1747 1 to 829       829/829
(100 %)
13 diff
(98.5 %id)
BX347023   .a 937 to 1747 1 to 812       812/812
(100 %)
6 diff
(99.3 %id)
BX326375   .a 947 to 1748 1 to 797       797/797
(100 %)
14 diff
(98.3 %id)
BU743202 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 947 to 1587 660 to 19   fully sequenced, AAA   642/642
(100 %)
4 diff
(99.4 %id)
BX369486   .a 1020 to 1583 1 to 562       562/562
(100 %)
3 diff
(99.5 %id)
AA310724   .a 1045 to 1335 1 to 292       292/292
(100 %)
5 diff
(98.3 %id)
BM725143 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1051 to 1688 1 to 638       638/638
(100 %)
1 diff
(99.9 %id)
AI332673 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1122 to 1583 462 to 1       462/462
(100 %)
0 diff
(100 %id)
BM709688 eye, Retina Foveal and Macular .a 1167 to 1736 1 to 568       568/568
(100 %)
3 diff
(99.5 %id)
BX422091 T cells (Jurkat cell line) .a 1184 to 1528 344 to 1   fully sequenced,   344/344
(100 %)
7 diff
(98.0 %id)
AI951840 brain, four pooled pituitary adenomas .a 1243 to 1740 497 to 1       497/507
(98 %)
1 diff
(99.9 %id)
BM677196 eye, fetal eye .a 1260 to 1738 497 to 19   AAA   479/479
(100 %)
1 diff
(99.8 %id)
BQ186581 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1269 to 1742 1 to 474   AAA   474/474
(100 %)
1 diff
(99.8 %id)
BM677219 eye, fetal eye .a 1327 to 1738 430 to 19   AAA   412/412
(100 %)
0 diff
(100 %id)
BM682223 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene SIX6, variant not shown         This clone was ignored    
BM723366 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene SIX6, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes DCI