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Gene SIX2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
59 supporting clones for gene SIX2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CF619326 Pooled Chondrosarcoma Tumor cells .a 1 to 594 106 to 704   tiling clone,   599/1127
(53 %)
7 diff
(99.4 %id)
BQ071675 brain, neuroblastoma, cell line .a 10 to 774 1 to 776       776/1038
(74 %)
23 diff
(97.8 %id)
BX400894   .a 11 to 1140 1 to 1109       1109/1110
(99 %)
21 diff
(98.2 %id)
BQ944758 carcinoma, cell line, Prostate .a 12 to 888 1 to 877       877/1041
(84 %)
40 diff
(96.2 %id)
BU543706 carcinoma, cell line, Prostate .a 12 to 855 1 to 854       854/867
(98 %)
24 diff
(97.3 %id)
BG898447 cartilage .a 17 to 415 86 to 485       400/417
(95 %)
6 diff
(98.6 %id)
CR595397 HeLa cells Cot 25-normalized .a 27 to 2157 1 to 2130   tiling clone,   2130/2130
(100 %)
1 diff
(100.0 %id)
BX341976   .a 27 to 1092 1 to 1050       1050/1055
(99 %)
29 diff
(97.3 %id)
BX325762   .a 32 to 366 1 to 333       333/333
(100 %)
6 diff
(98.2 %id)
BE298099 muscle, rhabdomyosarcoma .a 64 to 561 1 to 504       504/504
(100 %)
8 diff
(98.5 %id)
BG829041 muscle, rhabdomyosarcoma .a 103 to 877 1 to 775       775/782
(99 %)
8 diff
(99.0 %id)
BX370484   .a 197 to 738 1 to 547       547/928
(58 %)
22 diff
(97.7 %id)
TI_1948218306   .a 320 to 1204 125 to 1027   tiling clone, fully sequenced,   903/1027
(87 %)
37 diff
(96.4 %id)
TI_1948218477   .a 320 to 1082 132 to 910       779/1408
(55 %)
37 diff
(97.4 %id)
BE547717 cervical carcinoma cell line, cervix .a 545 to 1263 1 to 730       730/969
(75 %)
30 diff
(97.0 %id)
TI_1948218307   .a 878 to 1201 450 to 127   fully sequenced,   324/450
(72 %)
0 diff
(100 %id)
AF332197 salivary gland .b 1 to 2134 1 to 2134 exact tiling clone, AAA   2134/2134
(100 %)
2 diff
(100.0 %id)
NM_016932.4   .b 1 to 2153 1 to 2153 exact RefSeq, AAA   2153/2153
(100 %)
0 diff
(100 %id)
BX328867   .b 5 to 966 1 to 957       957/957
(100 %)
8 diff
(99.2 %id)
BX341987   .b 5 to 870 1 to 860       860/860
(100 %)
9 diff
(99.0 %id)
BC024033 Muscle, rhabdomyosarcoma .b 21 to 2130 1 to 2110   tiling clone, available from MGC, AAA   2110/2110
(100 %)
2 diff
(100.0 %id)
AF136940   .b 242 to 1665 1 to 1424       1424/1425
(99 %)
1 diff
(100.0 %id)
TI_1948217967   .b 293 to 854 129 to 690       562/1348
(41 %)
2 diff
(99.9 %id)
TI_1948218134   .b 293 to 854 125 to 685       561/1325
(42 %)
5 diff
(99.7 %id)
BT020100   .b 294 to 1169 1 to 876       876/876
(100 %)
1 diff
(99.9 %id)
EL735163 mixed .b 294 to 969 1 to 672       672/672
(100 %)
5 diff
(99.3 %id)
AF332196   .b 304 to 1431 1 to 1128   AAA   1128/1128
(100 %)
1 diff
(100.0 %id)
BX280822 cervical carcinoma cell line, cervix .b 493 to 966 1 to 474       474/474
(100 %)
0 diff
(100 %id)
BX388677   .b 594 to 1488 1 to 904       904/906
(99 %)
49 diff
(94.6 %id)
TI_1948217968   .b 845 to 1168 448 to 125       324/1361
(23 %)
0 diff
(100 %id)
TI_1948218135   .b 845 to 1168 450 to 126       325/1390
(23 %)
0 diff
(100 %id)
BX347429   .b 868 to 1775 1 to 907       907/911
(99 %)
18 diff
(98.1 %id)
BX341975   .b 1002 to 2124 1105 to 1       1105/1109
(99 %)
38 diff
(96.6 %id)
BX328866   .b 1091 to 2119 1029 to 1       1029/1029
(100 %)
6 diff
(99.5 %id)
CN364603 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1148 to 1773 1 to 626       626/626
(100 %)
1 diff
(99.9 %id)
BQ343404 nervous_tumor .b 1153 to 1576 50 to 472       423/472
(89 %)
6 diff
(98.8 %id)
BQ343564 nervous_tumor .b 1155 to 1683 545 to 14       532/545
(97 %)
0 diff
(100 %id)
BQ343562 nervous_tumor .b 1163 to 1645 512 to 29       484/512
(94 %)
0 diff
(100 %id)
AW891214 nervous_tumor .b 1165 to 1681 518 to 1       518/518
(100 %)
7 diff
(98.7 %id)
BQ343563 nervous_tumor .b 1170 to 1684 513 to 10       504/514
(98 %)
0 diff
(100 %id)
AW891210 nervous_tumor .b 1342 to 1680 353 to 2       352/353
(99 %)
0 diff
(100 %id)
BE764642 nervous_tumor .b 1365 to 1675 640 to 329       312/640
(48 %)
0 diff
(100 %id)
BM017907 astrocytoma grade IV, cell line, brain .b 1454 to 2133 1 to 678   AAA   678/678
(100 %)
6 diff
(99.2 %id)
TI_59388485   .b 1455 to 2133 96 to 772   AAA   677/677
(100 %)
5 diff
(99.3 %id)
BF512257   .b 1522 to 1783 1 to 262     Submitted on the opposite strand 262/262
(100 %)
5 diff
(98.1 %id)
CA413774 Chondrosarcoma Grade II, Left Pelvis .b 1635 to 2130 516 to 19   AAA   498/499
(99 %)
3 diff
(99.4 %id)
EL950823 eyeball .b 1662 to 2177 19 to 535   AAA   517/535
(96 %)
6 diff
(98.9 %id)
AI697804 carcinoid, lung .b 1700 to 2136 437 to 1   tiling clone,   437/437
(100 %)
0 diff
(100 %id)
AI811914 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .b 1701 to 2135 436 to 1       436/436
(100 %)
2 diff
(99.6 %id)
AW194582 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .b 1718 to 2138 422 to 1       422/422
(100 %)
14 diff
(96.7 %id)
AI701861 carcinoid, lung .b 1741 to 2141 420 to 20       401/420
(95 %)
0 diff
(100 %id)
AW078611 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .b 1749 to 2134 386 to 1       386/386
(100 %)
1 diff
(99.8 %id)
AI214794 carcinoid, lung .b 1779 to 2141 366 to 4       363/366
(99 %)
0 diff
(100 %id)
AI299144 carcinoid, lung .b 1788 to 2153 391 to 26   AAA   366/366
(100 %)
5 diff
(98.7 %id)
AI630789 carcinoid, lung .b 1808 to 2131 325 to 1       325/325
(100 %)
1 diff
(99.7 %id)
AI697859 carcinoid, lung .b 1816 to 2135 322 to 3       320/322
(99 %)
0 diff
(100 %id)
BE551140 carcinoid, lung .b 1825 to 2125 301 to 3       299/301
(99 %)
0 diff
(100 %id)
BE328432 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .b 1827 to 2130 315 to 12   AAA   304/304
(100 %)
4 diff
(98.7 %id)
AI302128 carcinoid, lung .b 1850 to 2148 322 to 24   AAA   299/299
(100 %)
9 diff
(97.0 %id)
AA808542 carcinoid, lung .b 1993 to 2130 138 to 1       138/138
(100 %)
0 diff
(100 %id)
DR422668 eye, Pterygium .c-u 1 to 657 1 to 657 exact tiling clone,   657/657
(100 %)
1 diff
(99.9 %id)
BM999458 Fibrosarcoma Gene SIX2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI